Wall clock time and date at job start Tue Mar 31 2020 05:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31541 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48506 * 109.46839 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47062 * 299.99713 * 3 2 1 6 6 H 1.48500 * 109.47292 * 60.00237 * 3 2 1 7 7 C 1.38778 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99970 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.76192 * 99.99990 * 180.02562 * 9 7 2 11 11 N 1.30695 * 119.04467 * 359.97438 * 10 9 7 12 12 C 1.36175 * 121.68393 * 179.97438 * 11 10 9 13 13 C 1.40065 * 129.00036 * 180.02562 * 12 11 10 14 14 C 1.32682 * 115.82527 * 179.97438 * 13 12 11 15 15 S 1.75572 * 110.59420 * 0.02562 * 14 13 12 16 16 C 1.39269 * 118.39688 * 359.97438 * 12 11 10 17 17 C 1.41349 * 119.28504 * 0.02562 * 16 12 11 18 18 O 1.21977 * 120.58537 * 179.97438 * 17 16 12 19 19 N 1.34886 * 118.83582 * 359.97438 * 17 16 12 20 20 C 1.40133 * 120.05555 * 179.97438 * 19 17 16 21 21 C 1.38815 * 120.07952 * 89.72479 * 20 19 17 22 22 C 1.38132 * 119.95422 * 179.72644 * 21 20 19 23 23 C 1.38290 * 120.11421 * 0.56836 * 22 21 20 24 24 C 1.38254 * 120.15702 * 359.70756 * 23 22 21 25 25 C 1.38325 * 120.04626 * 359.97438 * 24 23 22 26 26 F 1.35100 * 120.05931 * 180.02562 * 25 24 23 27 27 H 0.97002 * 120.00101 * 0.02562 * 1 2 3 28 28 H 1.07999 * 122.08703 * 359.73012 * 13 12 11 29 29 H 1.07999 * 124.70445 * 180.02562 * 14 13 12 30 30 H 1.08004 * 120.02189 * 0.02562 * 21 20 19 31 31 H 1.08002 * 119.94299 * 180.27809 * 22 21 20 32 32 H 1.08002 * 119.91934 * 179.72472 * 23 22 21 33 33 H 1.07999 * 119.98047 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0093 -1.2019 -0.0005 8 1 3.0893 -1.2019 -0.0001 9 16 1.1283 -2.7278 -0.0005 10 6 2.4780 -3.8603 -0.0005 11 7 3.6985 -3.3929 -0.0010 12 6 4.7809 -4.2193 -0.0006 13 6 6.1420 -3.8890 -0.0005 14 6 6.9853 -4.9133 0.0006 15 16 6.1090 -6.4347 0.0009 16 6 4.5639 -5.5949 0.0011 17 6 3.2384 -6.0858 0.0016 18 8 3.0210 -7.2861 0.0025 19 7 2.2179 -5.2037 0.0010 20 6 0.8938 -5.6623 0.0010 21 6 0.2380 -5.8949 1.2022 22 6 -1.0691 -6.3415 1.1991 23 6 -1.7220 -6.5686 0.0014 24 6 -1.0715 -6.3439 -1.1977 25 6 0.2353 -5.8904 -1.2023 26 9 0.8711 -5.6703 -2.3739 27 1 -0.4850 0.8401 -0.0004 28 1 6.4838 -2.8645 -0.0052 29 1 8.0616 -4.8237 0.0012 30 1 0.7479 -5.7222 2.1385 31 1 -1.5806 -6.5181 2.1338 32 1 -2.7425 -6.9221 0.0027 33 1 -1.5842 -6.5218 -2.1314 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032100302.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:57 Heat of formation + Delta-G solvation = 14.896855 kcal Electronic energy + Delta-G solvation = -25134.326637 eV Core-core repulsion = 21292.953324 eV Total energy + Delta-G solvation = -3841.373313 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 348.014 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.74991 -41.26687 -38.78519 -37.47528 -36.05564 -33.40439 -32.89002 -30.66274 -29.89280 -29.12995 -26.00273 -25.17108 -23.85647 -22.86748 -22.41589 -20.85568 -19.17426 -18.25985 -17.71897 -17.25266 -16.65447 -16.62490 -16.29085 -15.37927 -15.15313 -15.13236 -14.90334 -14.75033 -14.03586 -13.78054 -13.62706 -13.22506 -13.16674 -12.86766 -12.58496 -12.30814 -12.26287 -11.90290 -11.52541 -11.36182 -11.29057 -11.24680 -10.81604 -10.42427 -9.86047 -9.56645 -9.55053 -9.49448 -9.13751 -8.90132 -8.71575 -8.59904 -8.02520 -6.95596 -6.71719 -4.46717 0.58981 1.03305 1.22656 1.67791 1.81440 2.15130 2.37831 2.74038 2.97591 3.05180 3.10886 3.19698 3.55071 3.81013 3.97586 4.25813 4.51717 4.75030 4.77044 4.92755 4.93402 5.04761 5.20641 5.30488 5.33642 5.42587 5.55416 5.97635 6.04072 6.05702 6.17020 6.23630 6.26838 6.35673 6.65310 6.85519 6.95204 7.36283 8.17344 8.21869 8.35098 8.81283 10.35312 Molecular weight = 348.01amu Principal moments of inertia in cm(-1) A = 0.008018 B = 0.006213 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3491.239663 B = 4505.750758 C = 7388.877161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.078 3.922 3 Si 0.935 3.065 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.119 0.881 9 S 0.195 5.805 10 C 0.330 3.670 11 N -0.518 5.518 12 C 0.208 3.792 13 C -0.128 4.128 14 C -0.174 4.174 15 S 0.159 5.841 16 C -0.370 4.370 17 C 0.583 3.417 18 O -0.541 6.541 19 N -0.484 5.484 20 C 0.086 3.914 21 C -0.062 4.062 22 C -0.123 4.123 23 C -0.078 4.078 24 C -0.150 4.150 25 C 0.128 3.872 26 F -0.128 7.128 27 H 0.278 0.722 28 H 0.150 0.850 29 H 0.173 0.827 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -8.841 1.274 9.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.133 4.133 3 Si 0.760 3.240 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.689 4.689 8 H 0.137 0.863 9 S 0.439 5.561 10 C -0.035 4.035 11 N -0.247 5.247 12 C 0.075 3.925 13 C -0.160 4.160 14 C -0.311 4.311 15 S 0.420 5.580 16 C -0.497 4.497 17 C 0.380 3.620 18 O -0.420 6.420 19 N -0.207 5.207 20 C -0.005 4.005 21 C -0.082 4.082 22 C -0.142 4.142 23 C -0.096 4.096 24 C -0.169 4.169 25 C 0.107 3.893 26 F -0.107 7.107 27 H 0.088 0.912 28 H 0.168 0.832 29 H 0.191 0.809 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.567 -10.246 1.223 10.334 hybrid contribution 1.476 2.015 -0.279 2.514 sum 2.044 -8.231 0.945 8.533 Atomic orbital electron populations 1.69914 1.06296 1.29039 1.44775 1.25215 0.95207 1.00074 0.92804 0.85820 0.80197 0.79825 0.78157 1.18613 1.20144 1.20133 1.23685 0.98182 0.88919 1.58154 0.86301 1.83856 0.98298 0.96246 1.77665 1.26541 0.99732 0.84673 0.92563 1.69052 0.94773 1.32168 1.28684 1.19170 0.93703 0.87863 0.91777 1.19543 0.89842 1.01070 1.05592 1.25607 1.03601 0.96227 1.05705 1.83690 0.93416 1.06181 1.74687 1.23991 0.97859 0.98171 1.29681 1.15788 0.83547 0.85616 0.77060 1.90871 1.85190 1.13710 1.52226 1.43752 1.05225 1.06342 1.65381 1.17569 0.84474 1.05162 0.93324 1.21139 0.94853 0.95689 0.96490 1.21055 0.93861 1.00379 0.98859 1.21088 0.99959 0.97238 0.91312 1.21050 0.92555 1.02892 1.00424 1.17831 0.91581 0.99536 0.80362 1.91526 1.81949 1.92023 1.45169 0.91170 0.83240 0.80939 0.84612 0.84468 0.84448 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.53 13.22 55.49 0.73 -21.79 16 2 C 0.08 1.97 5.49 -17.48 -0.10 1.87 16 3 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.54 -13.97 9.24 30.93 0.29 -13.68 16 8 H 0.12 3.12 6.51 -52.49 -0.34 2.78 16 9 S 0.20 4.62 20.40 -107.50 -2.19 2.43 16 10 C 0.33 7.52 7.75 -88.56 -0.69 6.83 16 11 N -0.52 -11.89 8.47 -11.07 -0.09 -11.99 16 12 C 0.21 4.25 6.99 -84.87 -0.59 3.66 16 13 C -0.13 -2.07 10.16 -40.79 -0.41 -2.48 16 14 C -0.17 -2.32 11.12 28.84 0.32 -2.00 16 15 S 0.16 2.50 23.29 -107.50 -2.50 -0.01 16 16 C -0.37 -7.55 6.47 -38.02 -0.25 -7.79 16 17 C 0.58 12.89 7.43 -15.03 -0.11 12.78 16 18 O -0.54 -12.60 17.14 4.94 0.08 -12.51 16 19 N -0.48 -10.37 2.50 -63.13 -0.16 -10.53 16 20 C 0.09 1.64 3.19 -83.55 -0.27 1.37 16 21 C -0.06 -0.98 9.97 -39.41 -0.39 -1.38 16 22 C -0.12 -1.50 10.04 -39.60 -0.40 -1.90 16 23 C -0.08 -0.89 10.04 -39.56 -0.40 -1.28 16 24 C -0.15 -2.05 10.02 -39.54 -0.40 -2.44 16 25 C 0.13 2.29 7.31 -39.25 -0.29 2.01 16 26 F -0.13 -2.53 17.08 2.25 0.04 -2.49 16 27 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.15 2.17 8.06 -52.49 -0.42 1.74 16 29 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.14 2.03 8.06 -52.48 -0.42 1.60 16 31 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 331.35 15.07 4.99 4.99 Total: -1.00 -31.38 331.35 -9.81 -41.19 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -2.01 Total: 0.50 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -3.68 Total: -4.44 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.48 Total: -44.31 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 7.12 SS G_CDS: -4.70 Total: 2.42 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.38 -9.81 -41.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032100302.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.091 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds