Wall clock time and date at job start Tue Mar 31 2020 05:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31541 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48506 * 109.46839 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47062 * 299.99713 * 3 2 1 6 6 H 1.48500 * 109.47292 * 60.00237 * 3 2 1 7 7 C 1.38778 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99970 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.76192 * 99.99990 * 180.02562 * 9 7 2 11 11 N 1.30695 * 119.04467 * 359.97438 * 10 9 7 12 12 C 1.36175 * 121.68393 * 179.97438 * 11 10 9 13 13 C 1.40065 * 129.00036 * 180.02562 * 12 11 10 14 14 C 1.32682 * 115.82527 * 179.97438 * 13 12 11 15 15 S 1.75572 * 110.59420 * 0.02562 * 14 13 12 16 16 C 1.39269 * 118.39688 * 359.97438 * 12 11 10 17 17 C 1.41349 * 119.28504 * 0.02562 * 16 12 11 18 18 O 1.21977 * 120.58537 * 179.97438 * 17 16 12 19 19 N 1.34886 * 118.83582 * 359.97438 * 17 16 12 20 20 C 1.40133 * 120.05555 * 179.97438 * 19 17 16 21 21 C 1.38815 * 120.07952 * 89.72479 * 20 19 17 22 22 C 1.38132 * 119.95422 * 179.72644 * 21 20 19 23 23 C 1.38290 * 120.11421 * 0.56836 * 22 21 20 24 24 C 1.38254 * 120.15702 * 359.70756 * 23 22 21 25 25 C 1.38325 * 120.04626 * 359.97438 * 24 23 22 26 26 F 1.35100 * 120.05931 * 180.02562 * 25 24 23 27 27 H 0.97002 * 120.00101 * 0.02562 * 1 2 3 28 28 H 1.07999 * 122.08703 * 359.73012 * 13 12 11 29 29 H 1.07999 * 124.70445 * 180.02562 * 14 13 12 30 30 H 1.08004 * 120.02189 * 0.02562 * 21 20 19 31 31 H 1.08002 * 119.94299 * 180.27809 * 22 21 20 32 32 H 1.08002 * 119.91934 * 179.72472 * 23 22 21 33 33 H 1.07999 * 119.98047 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0093 -1.2019 -0.0005 8 1 3.0893 -1.2019 -0.0001 9 16 1.1283 -2.7278 -0.0005 10 6 2.4780 -3.8603 -0.0005 11 7 3.6985 -3.3929 -0.0010 12 6 4.7809 -4.2193 -0.0006 13 6 6.1420 -3.8890 -0.0005 14 6 6.9853 -4.9133 0.0006 15 16 6.1090 -6.4347 0.0009 16 6 4.5639 -5.5949 0.0011 17 6 3.2384 -6.0858 0.0016 18 8 3.0210 -7.2861 0.0025 19 7 2.2179 -5.2037 0.0010 20 6 0.8938 -5.6623 0.0010 21 6 0.2380 -5.8949 1.2022 22 6 -1.0691 -6.3415 1.1991 23 6 -1.7220 -6.5686 0.0014 24 6 -1.0715 -6.3439 -1.1977 25 6 0.2353 -5.8904 -1.2023 26 9 0.8711 -5.6703 -2.3739 27 1 -0.4850 0.8401 -0.0004 28 1 6.4838 -2.8645 -0.0052 29 1 8.0616 -4.8237 0.0012 30 1 0.7479 -5.7222 2.1385 31 1 -1.5806 -6.5181 2.1338 32 1 -2.7425 -6.9221 0.0027 33 1 -1.5842 -6.5218 -2.1314 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032100302.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:56 Heat of formation + Delta-G solvation = -2.591371 kcal Electronic energy + Delta-G solvation = -25135.084983 eV Core-core repulsion = 21292.953324 eV Total energy + Delta-G solvation = -3842.131659 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 348.014 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.14254 -42.83887 -40.01143 -39.04037 -37.53640 -34.96284 -34.67318 -31.81073 -31.34743 -30.45797 -27.89175 -26.70441 -25.38203 -24.05134 -23.65585 -22.28368 -20.77047 -19.70412 -19.40309 -18.52775 -18.26438 -18.01142 -17.67453 -17.01480 -16.77327 -16.65481 -16.41581 -15.90816 -15.27672 -15.11423 -15.09117 -14.80385 -14.55161 -14.49736 -13.94639 -13.67760 -13.44693 -13.36241 -13.08495 -13.01444 -12.94034 -12.45794 -12.13111 -12.07305 -11.53947 -11.35066 -11.12829 -11.06170 -10.89171 -10.15314 -10.11814 -9.83179 -9.62698 -8.60180 -8.58742 -6.40619 -0.90033 -0.14865 0.09666 0.24196 0.26398 0.62735 0.92318 1.22446 1.37180 1.40042 1.44765 1.55659 2.09200 2.38478 2.45045 2.85804 2.88305 3.04577 3.30257 3.52355 3.65402 3.91520 3.94608 4.09815 4.21732 4.23968 4.38948 4.78794 4.87240 4.91240 4.94937 4.99115 5.16036 5.25484 5.26005 5.30107 5.46431 5.78209 6.24535 6.52772 6.68214 6.89931 8.50043 Molecular weight = 348.01amu Principal moments of inertia in cm(-1) A = 0.008018 B = 0.006213 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3491.239663 B = 4505.750758 C = 7388.877161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.036 3.964 3 Si 0.998 3.002 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.566 4.566 8 H 0.106 0.894 9 S 0.169 5.831 10 C 0.332 3.668 11 N -0.540 5.540 12 C 0.186 3.814 13 C -0.155 4.155 14 C -0.126 4.126 15 S 0.199 5.801 16 C -0.405 4.405 17 C 0.569 3.431 18 O -0.566 6.566 19 N -0.480 5.480 20 C 0.045 3.955 21 C -0.083 4.083 22 C -0.108 4.108 23 C -0.060 4.060 24 C -0.145 4.145 25 C 0.087 3.913 26 F -0.152 7.152 27 H 0.284 0.716 28 H 0.167 0.833 29 H 0.230 0.770 30 H 0.132 0.868 31 H 0.180 0.820 32 H 0.190 0.810 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 -9.582 1.837 9.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.171 4.171 3 Si 0.819 3.181 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.714 4.714 8 H 0.124 0.876 9 S 0.412 5.588 10 C -0.036 4.036 11 N -0.269 5.269 12 C 0.053 3.947 13 C -0.186 4.186 14 C -0.264 4.264 15 S 0.461 5.539 16 C -0.530 4.530 17 C 0.367 3.633 18 O -0.447 6.447 19 N -0.201 5.201 20 C -0.046 4.046 21 C -0.102 4.102 22 C -0.127 4.127 23 C -0.078 4.078 24 C -0.164 4.164 25 C 0.067 3.933 26 F -0.130 7.130 27 H 0.093 0.907 28 H 0.185 0.815 29 H 0.247 0.753 30 H 0.150 0.850 31 H 0.197 0.803 32 H 0.208 0.792 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.267 -11.025 1.790 11.241 hybrid contribution 1.395 1.972 -0.425 2.452 sum 2.661 -9.053 1.365 9.534 Atomic orbital electron populations 1.69975 1.07426 1.30035 1.45755 1.26045 0.96019 1.02913 0.92154 0.84912 0.78660 0.75891 0.78672 1.18808 1.19314 1.19001 1.23784 0.97875 0.90297 1.59424 0.87598 1.83652 0.99143 0.95826 1.80223 1.26384 0.99585 0.85198 0.92465 1.68973 0.95649 1.33875 1.28423 1.19751 0.94794 0.87797 0.92318 1.19730 0.88115 1.02936 1.07847 1.26253 1.05677 0.93798 1.00630 1.83554 0.90434 1.06807 1.73134 1.24412 0.99289 0.99402 1.29862 1.16186 0.84492 0.85578 0.77057 1.90820 1.85695 1.14338 1.53867 1.43763 1.06578 1.05678 1.64120 1.18052 0.83864 1.07677 0.95027 1.21363 0.96647 0.96883 0.95317 1.21604 0.92136 0.97686 1.01237 1.21725 1.01716 0.94619 0.89730 1.21526 0.90767 1.01204 1.02887 1.18348 0.93426 1.02171 0.79392 1.91450 1.82710 1.92609 1.46261 0.90675 0.81543 0.75324 0.84961 0.80309 0.79248 0.81235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.86 13.22 21.64 0.29 -47.57 16 2 C 0.04 1.88 5.49 84.87 0.47 2.34 16 3 Si 1.00 40.87 29.55 68.60 2.03 42.89 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.57 -30.58 9.24 67.95 0.63 -29.95 16 8 H 0.11 5.84 6.51 -2.91 -0.02 5.82 16 9 S 0.17 8.50 20.40 -56.49 -1.15 7.35 16 10 C 0.33 16.05 7.75 179.63 1.39 17.45 16 11 N -0.54 -26.05 8.47 -188.95 -1.60 -27.65 16 12 C 0.19 7.75 6.99 39.16 0.27 8.02 16 13 C -0.15 -4.78 10.16 21.54 0.22 -4.56 16 14 C -0.13 -2.88 11.12 66.65 0.74 -2.14 16 15 S 0.20 5.87 23.29 -56.49 -1.32 4.55 16 16 C -0.40 -16.80 6.47 23.28 0.15 -16.64 16 17 C 0.57 26.35 7.43 84.99 0.63 26.98 16 18 O -0.57 -27.46 17.14 -5.24 -0.09 -27.55 16 19 N -0.48 -21.83 2.50 -471.67 -1.18 -23.01 16 20 C 0.04 1.78 3.19 38.15 0.12 1.90 16 21 C -0.08 -2.67 9.97 22.38 0.22 -2.45 16 22 C -0.11 -2.41 10.04 22.26 0.22 -2.19 16 23 C -0.06 -1.18 10.04 22.29 0.22 -0.96 16 24 C -0.14 -3.79 10.02 22.29 0.22 -3.57 16 25 C 0.09 3.26 7.31 22.49 0.16 3.42 16 26 F -0.15 -6.41 17.08 44.97 0.77 -5.64 16 27 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 28 H 0.17 4.53 8.06 -2.91 -0.02 4.51 16 29 H 0.23 2.65 8.06 -2.91 -0.02 2.62 16 30 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 31 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.17 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -75.35 331.35 4.62 -70.73 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.19 Total: 8.24 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 5.68 Total: -2.35 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -2.49 Total: -98.23 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.09 Total: -27.55 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 0.77 Total: -5.64 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: 14.37 SS G_CDS: -2.47 Total: 11.90 kcal Total: -75.35 4.62 -70.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032100302.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.138 kcal (2) G-P(sol) polarization free energy of solvation -75.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds