Wall clock time and date at job start Tue Mar 31 2020 05:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86808 * 119.99713 * 2 1 4 4 H 1.48492 * 109.47151 * 269.99751 * 3 2 1 5 5 H 1.48500 * 109.47033 * 30.00158 * 3 2 1 6 6 H 1.48498 * 109.46886 * 149.99973 * 3 2 1 7 7 C 1.38935 * 120.00593 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00056 * 159.34572 * 7 2 1 9 9 N 1.37061 * 119.99778 * 339.35658 * 7 2 1 10 10 C 1.39990 * 119.71919 * 317.75992 * 9 7 2 11 11 C 1.39058 * 129.83644 * 0.04864 * 10 9 7 12 12 C 1.33064 * 115.58500 * 179.97438 * 11 10 9 13 13 S 1.70429 * 111.30706 * 0.02562 * 12 11 10 14 14 C 1.38465 * 118.12028 * 180.02562 * 10 9 7 15 15 C 1.41892 * 119.25871 * 0.02562 * 14 10 9 16 16 O 1.21795 * 120.20829 * 179.97438 * 15 14 10 17 17 N 1.34655 * 119.59329 * 359.97438 * 15 14 10 18 18 C 1.40117 * 119.61831 * 179.97438 * 17 15 14 19 19 C 1.38867 * 120.05944 * 270.49738 * 18 17 15 20 20 C 1.38107 * 119.95632 * 180.02562 * 19 18 17 21 21 C 1.38274 * 120.08265 * 359.97438 * 20 19 18 22 22 C 1.38382 * 120.12029 * 359.97438 * 21 20 19 23 23 Cl 1.73598 * 119.97968 * 180.02562 * 22 21 20 24 24 C 1.38251 * 120.04107 * 359.76779 * 22 21 20 25 25 C 1.34233 * 119.72232 * 138.07817 * 9 7 2 26 26 O 1.21582 * 119.14836 * 359.97438 * 25 9 7 27 27 H 0.96997 * 120.00508 * 359.97438 * 1 2 3 28 28 H 1.08001 * 122.20750 * 359.95386 * 11 10 9 29 29 H 1.07998 * 124.34525 * 179.97438 * 12 11 10 30 30 H 1.08005 * 120.02468 * 359.97438 * 19 18 17 31 31 H 1.08005 * 119.95518 * 179.97438 * 20 19 18 32 32 H 1.07998 * 119.93904 * 180.02562 * 21 20 19 33 33 H 1.07999 * 120.04560 * 180.25432 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6179 0.0000 4 1 2.4953 2.0465 -1.4000 5 1 1.4452 2.6527 0.7001 6 1 3.5453 1.4403 0.7000 7 6 2.0086 -1.2031 0.0005 8 1 3.0366 -1.2332 -0.3294 9 7 1.3894 -2.3519 0.4195 10 6 0.5709 -2.3246 1.5549 11 6 0.2484 -1.2647 2.3953 12 6 -0.5670 -1.5592 3.4048 13 16 -1.0035 -3.2066 3.3878 14 6 -0.0380 -3.5041 1.9490 15 6 0.1873 -4.6859 1.1966 16 8 -0.3392 -5.7330 1.5280 17 7 0.9868 -4.6426 0.1140 18 6 1.2100 -5.8094 -0.6290 19 6 2.2638 -6.6521 -0.3008 20 6 2.4822 -7.8013 -1.0349 21 6 1.6526 -8.1142 -2.0959 22 6 0.6008 -7.2773 -2.4253 23 17 -0.4389 -7.6739 -3.7577 24 6 0.3743 -6.1283 -1.6905 25 6 1.5780 -3.4949 -0.2585 26 8 2.2984 -3.4905 -1.2378 27 1 -0.4851 0.8400 0.0004 28 1 0.6345 -0.2682 2.2392 29 1 -0.9077 -0.8461 4.1408 30 1 2.9127 -6.4085 0.5275 31 1 3.3021 -8.4565 -0.7799 32 1 1.8253 -9.0137 -2.6682 33 1 -0.4490 -5.4773 -1.9449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032103747.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:40 Heat of formation + Delta-G solvation = 24.278536 kcal Electronic energy + Delta-G solvation = -25576.630867 eV Core-core repulsion = 21721.247878 eV Total energy + Delta-G solvation = -3855.382988 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 348.012 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.73545 -39.19255 -38.08672 -37.41867 -36.35866 -34.66416 -34.13548 -32.64439 -30.78428 -30.22252 -28.65882 -25.65772 -24.73231 -22.76954 -22.70725 -22.48512 -20.40706 -19.48576 -18.57982 -17.51446 -16.55377 -16.35945 -16.10589 -15.89195 -15.32239 -14.75971 -14.72597 -14.37962 -14.05482 -13.71478 -13.57186 -13.50355 -13.33050 -13.14403 -12.67064 -12.04969 -11.93098 -11.78114 -11.58772 -11.42266 -11.37127 -11.13430 -10.94182 -10.70541 -10.42133 -10.02071 -9.81396 -9.54435 -9.38983 -8.96896 -8.90064 -8.65790 -8.24377 -7.25314 -6.77388 -4.64122 1.04803 1.14874 1.28409 1.92976 2.14659 2.52192 2.78679 2.94429 2.97381 3.02556 3.04049 3.15723 3.60725 3.79158 4.12082 4.26047 4.63675 4.87115 4.98659 5.16966 5.26795 5.35021 5.43851 5.58296 5.73256 5.74435 6.12144 6.23074 6.30768 6.39324 6.46897 6.54780 6.64759 6.86625 7.00549 7.08162 7.74078 7.93624 8.25768 8.45697 8.66057 9.18222 10.15231 Molecular weight = 348.01amu Principal moments of inertia in cm(-1) A = 0.012410 B = 0.004304 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.712444 B = 6503.984106 C = 7758.204844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.053 3.947 3 Si 0.929 3.071 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.343 4.343 8 H 0.112 0.888 9 N -0.338 5.338 10 C 0.252 3.748 11 C -0.103 4.103 12 C -0.217 4.217 13 S 0.211 5.789 14 C -0.397 4.397 15 C 0.591 3.409 16 O -0.540 6.540 17 N -0.516 5.516 18 C 0.171 3.829 19 C -0.092 4.092 20 C -0.100 4.100 21 C -0.106 4.106 22 C -0.027 4.027 23 Cl -0.070 7.070 24 C -0.086 4.086 25 C 0.662 3.338 26 O -0.545 6.545 27 H 0.282 0.718 28 H 0.148 0.852 29 H 0.167 0.833 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 -6.476 2.975 7.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.159 4.159 3 Si 0.753 3.247 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.470 4.470 8 H 0.130 0.870 9 N -0.044 5.044 10 C 0.132 3.868 11 C -0.138 4.138 12 C -0.355 4.355 13 S 0.473 5.527 14 C -0.519 4.519 15 C 0.389 3.611 16 O -0.419 6.419 17 N -0.259 5.259 18 C 0.082 3.918 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.054 4.054 23 Cl -0.042 7.042 24 C -0.106 4.106 25 C 0.368 3.632 26 O -0.419 6.419 27 H 0.093 0.907 28 H 0.165 0.835 29 H 0.185 0.815 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.403 -7.777 3.273 8.447 hybrid contribution 0.900 2.054 -1.246 2.565 sum 0.497 -5.724 2.027 6.092 Atomic orbital electron populations 1.70001 1.06389 1.29450 1.40823 1.25629 0.95394 1.00702 0.94135 0.85888 0.79884 0.79471 0.79498 1.19401 1.19943 1.18400 1.19641 0.97348 0.81718 1.48302 0.87003 1.40540 1.38277 1.07444 1.18146 1.18321 0.90669 0.91964 0.85819 1.19376 1.00793 1.00052 0.93543 1.24901 1.04543 1.02162 1.03854 1.82369 1.47549 1.00694 1.22047 1.22891 1.20992 0.96870 1.11187 1.15824 0.78120 0.88262 0.78855 1.90797 1.50166 1.32054 1.68846 1.43904 1.45773 1.08713 1.27504 1.17077 0.95580 0.86657 0.92516 1.21315 0.96247 0.93856 0.99690 1.20909 0.99467 0.96638 0.94911 1.21054 0.94010 0.99423 0.98017 1.20584 0.95243 0.96794 0.92763 1.98357 1.66516 1.93642 1.45639 1.21066 0.99658 0.95907 0.93971 1.16254 0.83403 0.80045 0.83450 1.90883 1.40964 1.83736 1.26357 0.90744 0.83482 0.81548 0.85115 0.84374 0.84609 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.17 11.22 55.49 0.62 -19.54 16 2 C 0.05 1.23 3.57 -17.49 -0.06 1.16 16 3 Si 0.93 17.74 29.60 -169.99 -5.03 12.71 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.34 -8.58 8.60 -14.96 -0.13 -8.71 16 8 H 0.11 2.82 7.81 -52.49 -0.41 2.41 16 9 N -0.34 -8.42 2.72 -64.22 -0.17 -8.59 16 10 C 0.25 5.71 5.92 -83.74 -0.50 5.22 16 11 C -0.10 -2.05 8.14 -41.08 -0.33 -2.39 16 12 C -0.22 -3.52 10.86 28.93 0.31 -3.21 16 13 S 0.21 3.60 23.08 -107.50 -2.48 1.12 16 14 C -0.40 -8.61 6.48 -38.10 -0.25 -8.85 16 15 C 0.59 13.45 7.42 -14.92 -0.11 13.34 16 16 O -0.54 -12.68 17.06 5.10 0.09 -12.59 16 17 N -0.52 -11.67 2.59 -67.49 -0.17 -11.85 16 18 C 0.17 3.44 3.69 -83.63 -0.31 3.13 16 19 C -0.09 -1.54 9.97 -39.40 -0.39 -1.94 16 20 C -0.10 -1.33 10.04 -39.62 -0.40 -1.73 16 21 C -0.11 -1.40 9.83 -39.51 -0.39 -1.79 16 22 C -0.03 -0.42 6.32 -39.52 -0.25 -0.67 16 23 Cl -0.07 -0.97 28.95 -51.86 -1.50 -2.47 16 24 C -0.09 -1.61 9.75 -39.37 -0.38 -1.99 16 25 C 0.66 16.50 8.03 -87.77 -0.70 15.80 16 26 O -0.54 -14.53 16.01 5.29 0.08 -14.45 16 27 H 0.28 6.29 8.31 -40.82 -0.34 5.95 16 28 H 0.15 2.97 6.10 -52.49 -0.32 2.65 16 29 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.13 2.06 8.06 -52.48 -0.42 1.64 16 31 H 0.14 1.32 8.06 -52.48 -0.42 0.89 16 32 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.14 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 323.69 15.07 4.88 4.88 Total: -1.00 -29.55 323.69 -9.56 -39.11 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -1.98 Total: 4.31 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -3.89 Total: 7.37 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.27 Total: -39.98 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: 0.17 Total: -27.04 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -2.48 Total: 1.12 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.55 -9.56 -39.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032103747.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.390 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds