Wall clock time and date at job start Tue Mar 31 2020 05:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38128 * 120.03721 * 2 1 4 4 C 1.38266 * 120.07129 * 179.97438 * 3 2 1 5 5 C 1.38307 * 120.14372 * 0.02758 * 4 3 2 6 6 C 1.38076 * 120.07667 * 359.69632 * 5 4 3 7 7 C 1.38874 * 120.03341 * 179.97438 * 2 1 3 8 8 N 1.39830 * 120.07680 * 359.97438 * 7 2 1 9 9 C 1.34776 * 120.00372 * 153.79858 * 8 7 2 10 10 O 1.21661 * 119.99888 * 4.07925 * 9 8 7 11 11 C 1.47068 * 120.00385 * 184.08060 * 9 8 7 12 12 C 1.43204 * 119.99924 * 359.97438 * 11 9 8 13 13 N 5.52248 * 61.67345 * 177.13207 * 2 1 3 14 14 C 1.37898 * 120.00269 * 180.27726 * 11 9 8 15 15 C 1.46306 * 120.00357 * 172.58337 * 14 11 9 16 16 C 1.40213 * 120.25061 * 326.26749 * 15 14 11 17 17 C 1.37636 * 119.86836 * 179.97438 * 16 15 14 18 18 C 1.38717 * 120.38814 * 0.02562 * 17 16 15 19 19 C 1.38036 * 120.51612 * 359.97438 * 18 17 16 20 20 C 1.38781 * 120.11790 * 359.74317 * 19 18 17 21 21 O 1.35439 * 120.19604 * 180.27477 * 20 19 18 22 22 C 1.34747 * 116.99865 * 6.10805 * 21 20 19 23 23 H 1.07992 * 120.00013 * 5.38317 * 22 21 20 24 24 C 1.38766 * 119.99769 * 185.38976 * 22 21 20 25 25 N 1.31476 * 120.00313 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00070 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46731 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47029 * 119.99653 * 26 24 22 29 29 H 1.48492 * 109.47190 * 239.99640 * 26 24 22 30 30 H 1.08993 * 109.46924 * 270.02121 * 1 2 3 31 31 H 1.09005 * 109.46538 * 30.01627 * 1 2 3 32 32 H 1.08998 * 109.47165 * 150.01209 * 1 2 3 33 33 H 1.07995 * 119.96411 * 0.02562 * 3 2 1 34 34 H 1.08006 * 119.92797 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.96146 * 179.97438 * 5 4 3 36 36 H 1.07996 * 120.04054 * 180.29323 * 6 5 4 37 37 H 0.97006 * 120.00101 * 333.80809 * 8 7 2 38 38 H 1.08001 * 120.00024 * 352.58806 * 14 11 9 39 39 H 1.08000 * 120.06490 * 359.97438 * 16 15 14 40 40 H 1.08000 * 119.80406 * 179.97438 * 17 16 15 41 41 H 1.08004 * 119.73924 * 179.97438 * 18 17 16 42 42 H 1.08001 * 119.94343 * 180.02562 * 19 18 17 43 43 H 0.96996 * 120.00120 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1966 0.0005 5 6 4.2763 0.0010 0.0005 6 6 3.5913 -1.1978 0.0063 7 6 2.2021 -1.2023 0.0005 8 7 1.5053 -2.4146 0.0016 9 6 2.0771 -3.5211 -0.5132 10 8 3.2262 -3.4830 -0.9110 11 6 1.3122 -4.7746 -0.5941 12 6 -0.0402 -4.8196 -0.1253 13 7 -1.1134 -4.8551 0.2432 14 6 1.8992 -5.9082 -1.1156 15 6 1.1995 -7.1914 -1.0484 16 6 0.3753 -7.4901 0.0459 17 6 -0.2796 -8.6994 0.1007 18 6 -0.1290 -9.6259 -0.9206 19 6 0.6784 -9.3485 -2.0052 20 6 1.3441 -8.1333 -2.0851 21 8 2.1323 -7.8572 -3.1513 22 6 2.1299 -8.7493 -4.1612 23 1 1.4536 -9.5909 -4.1366 24 6 2.9966 -8.5867 -5.2326 25 7 3.8198 -7.5620 -5.2627 26 14 2.9939 -9.8239 -6.6323 27 1 1.9827 -10.8768 -6.3602 28 1 2.6598 -9.1325 -7.9033 29 1 4.3375 -10.4460 -6.7456 30 1 -0.3633 0.0004 1.0276 31 1 -0.3632 0.8899 -0.5141 32 1 -0.3633 -0.8901 -0.5136 33 1 1.6585 2.1311 0.0004 34 1 4.1194 2.1330 0.0010 35 1 5.3564 0.0051 0.0005 36 1 4.1348 -2.1311 0.0110 37 1 0.6101 -2.4592 0.3728 38 1 2.8755 -5.8489 -1.5735 39 1 0.2546 -6.7727 0.8441 40 1 -0.9139 -8.9286 0.9443 41 1 -0.6475 -10.5718 -0.8666 42 1 0.7887 -10.0764 -2.7954 43 1 4.4253 -7.4481 -6.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032752065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:22 Heat of formation + Delta-G solvation = 41.135201 kcal Electronic energy + Delta-G solvation = -28484.709778 eV Core-core repulsion = 24461.403917 eV Total energy + Delta-G solvation = -4023.305861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.126 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.68259 -39.52972 -38.56278 -37.14174 -36.21159 -34.84605 -33.52927 -32.66006 -32.60332 -30.39174 -29.43431 -28.91440 -26.94067 -25.71644 -24.66461 -22.98411 -21.92230 -21.34875 -21.03964 -20.69568 -18.57676 -18.34590 -17.60002 -16.88445 -15.89748 -15.68058 -15.34277 -15.22176 -14.88281 -14.58784 -14.41737 -14.26752 -14.07119 -13.97413 -13.83573 -13.74851 -13.29500 -13.11043 -12.95947 -12.74837 -12.59945 -12.43752 -12.16112 -12.04492 -11.95682 -11.66084 -11.54184 -11.27014 -11.17148 -10.99942 -10.92335 -10.62367 -10.47684 -9.81500 -9.76198 -9.47871 -9.14784 -8.73445 -8.23445 -8.00412 -7.45613 -6.79724 -4.34487 0.60763 1.30243 1.42115 2.07788 2.18270 2.80162 2.87588 2.96760 2.97070 3.03762 3.09396 3.69587 3.72013 3.89128 4.24889 4.28281 4.71263 4.77196 4.80433 4.80995 4.84219 5.09310 5.17704 5.32730 5.37784 5.42300 5.46723 5.50245 5.54862 5.68010 5.75373 5.83376 5.87013 6.05800 6.12069 6.27861 6.33059 6.34730 6.42569 6.48424 6.50538 6.59649 6.78582 6.91062 7.02063 7.06567 7.08282 7.38793 7.44729 7.62792 7.73596 8.18382 8.63061 9.24596 10.35163 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.002824 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.932068 B = 9913.132162 C =11822.065624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.122 4.122 3 C -0.102 4.102 4 C -0.141 4.141 5 C -0.105 4.105 6 C -0.130 4.130 7 C 0.155 3.845 8 N -0.671 5.671 9 C 0.584 3.416 10 O -0.513 6.513 11 C -0.216 4.216 12 C 0.268 3.732 13 N -0.441 5.441 14 C 0.148 3.852 15 C -0.207 4.207 16 C -0.031 4.031 17 C -0.218 4.218 18 C -0.045 4.045 19 C -0.231 4.231 20 C 0.181 3.819 21 O -0.147 6.147 22 C -0.393 4.393 23 H 0.100 0.900 24 C 0.045 3.955 25 N -0.836 5.836 26 Si 0.946 3.054 27 H -0.264 1.264 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.156 0.844 37 H 0.408 0.592 38 H 0.160 0.840 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.135 0.865 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.851 9.140 9.042 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.160 4.160 5 C -0.124 4.124 6 C -0.150 4.150 7 C 0.060 3.940 8 N -0.314 5.314 9 C 0.375 3.625 10 O -0.391 6.391 11 C -0.223 4.223 12 C -0.045 4.045 13 N -0.119 5.119 14 C 0.124 3.876 15 C -0.209 4.209 16 C -0.050 4.050 17 C -0.237 4.237 18 C -0.063 4.063 19 C -0.250 4.250 20 C 0.123 3.877 21 O -0.046 6.046 22 C -0.468 4.468 23 H 0.118 0.882 24 C -0.164 4.164 25 N -0.467 5.467 26 Si 0.770 3.230 27 H -0.188 1.188 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.173 0.827 37 H 0.244 0.756 38 H 0.177 0.823 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.153 0.847 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.344 9.361 9.045 13.439 hybrid contribution -0.122 -0.689 -0.702 0.992 sum -3.465 8.672 8.343 12.522 Atomic orbital electron populations 1.20731 0.91204 1.03087 1.02220 1.19624 0.95923 0.91908 1.05003 1.20763 0.94179 0.96590 1.00572 1.21083 0.94174 0.98071 1.02690 1.21087 0.99957 0.91987 0.99375 1.21710 0.92507 1.00356 1.00402 1.17661 0.91633 0.84384 1.00299 1.43401 1.19757 1.07576 1.60712 1.17657 0.86144 0.82281 0.76400 1.90769 1.16624 1.83965 1.47692 1.17600 0.88946 0.95339 1.20456 1.25432 0.92701 0.93424 0.92909 1.81190 1.11512 1.07809 1.11402 1.23109 0.96521 0.88434 0.79514 1.17948 1.09171 0.95117 0.98642 1.21078 0.91996 0.96197 0.95696 1.20552 1.06266 0.95806 1.01073 1.21027 0.94827 0.97917 0.92541 1.21176 1.03979 0.98377 1.01425 1.19407 0.89869 0.91427 0.87032 1.83843 1.52976 1.45294 1.22524 1.21578 1.22252 1.06930 0.96074 0.88243 1.25451 0.94610 0.97768 0.98526 1.69995 1.19037 1.26573 1.31114 0.85561 0.78951 0.79143 0.79379 1.18788 1.19728 1.19719 0.91241 0.91043 0.91811 0.86015 0.86283 0.85835 0.82686 0.75564 0.82258 0.86563 0.86955 0.86769 0.84728 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.45 36.01 0.34 -0.76 16 2 C -0.12 -1.44 5.90 -104.43 -0.62 -2.05 16 3 C -0.10 -1.08 9.70 -39.61 -0.38 -1.46 16 4 C -0.14 -1.49 10.04 -39.55 -0.40 -1.88 16 5 C -0.11 -1.25 10.04 -39.62 -0.40 -1.65 16 6 C -0.13 -1.84 8.78 -39.39 -0.35 -2.19 16 7 C 0.16 2.15 6.42 -83.72 -0.54 1.61 16 8 N -0.67 -9.31 4.89 -10.93 -0.05 -9.36 16 9 C 0.58 9.48 7.63 -12.68 -0.10 9.39 16 10 O -0.51 -9.55 13.26 5.22 0.07 -9.48 16 11 C -0.22 -3.54 5.82 -104.51 -0.61 -4.15 16 12 C 0.27 4.33 10.58 -22.50 -0.24 4.09 16 13 N -0.44 -7.42 18.17 41.81 0.76 -6.66 16 14 C 0.15 2.68 9.01 -36.46 -0.33 2.35 16 15 C -0.21 -3.96 5.53 -104.94 -0.58 -4.54 16 16 C -0.03 -0.54 8.29 -39.06 -0.32 -0.86 16 17 C -0.22 -3.54 10.02 -39.62 -0.40 -3.94 16 18 C -0.04 -0.73 10.03 -39.48 -0.40 -1.13 16 19 C -0.23 -4.43 9.12 -39.45 -0.36 -4.79 16 20 C 0.18 3.89 6.67 -38.41 -0.26 3.63 16 21 O -0.15 -3.69 9.19 1.23 0.01 -3.67 16 22 C -0.39 -9.76 9.44 30.93 0.29 -9.46 16 23 H 0.10 2.26 5.30 -52.49 -0.28 1.98 16 24 C 0.04 1.11 5.50 -17.51 -0.10 1.01 16 25 N -0.84 -22.23 13.67 55.49 0.76 -21.47 16 26 Si 0.95 18.52 29.55 -169.99 -5.02 13.50 16 27 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 28 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 29 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.06 0.65 7.01 -51.93 -0.36 0.28 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 35 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 36 H 0.16 2.42 5.58 -52.49 -0.29 2.13 16 37 H 0.41 4.97 6.34 -40.82 -0.26 4.71 16 38 H 0.16 3.05 7.58 -52.49 -0.40 2.65 16 39 H 0.12 1.87 5.91 -52.49 -0.31 1.56 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 42 H 0.14 2.53 5.72 -52.49 -0.30 2.23 16 43 H 0.28 6.76 8.31 -40.82 -0.34 6.43 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -28.29 376.30 -7.83 -36.12 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -4.29 Total: 12.14 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -5.73 Total: -16.79 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 1.46 Total: -37.49 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.29 -7.83 -36.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032752065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.256 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds