Wall clock time and date at job start Tue Mar 31 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38128 * 120.03721 * 2 1 4 4 C 1.38266 * 120.07129 * 179.97438 * 3 2 1 5 5 C 1.38307 * 120.14372 * 0.02758 * 4 3 2 6 6 C 1.38076 * 120.07667 * 359.69632 * 5 4 3 7 7 C 1.38874 * 120.03341 * 179.97438 * 2 1 3 8 8 N 1.39830 * 120.07680 * 359.97438 * 7 2 1 9 9 C 1.34776 * 120.00372 * 153.79858 * 8 7 2 10 10 O 1.21661 * 119.99888 * 4.07925 * 9 8 7 11 11 C 1.47068 * 120.00385 * 184.08060 * 9 8 7 12 12 C 1.43204 * 119.99924 * 359.97438 * 11 9 8 13 13 N 5.52248 * 61.67345 * 177.13207 * 2 1 3 14 14 C 1.37898 * 120.00269 * 180.27726 * 11 9 8 15 15 C 1.46306 * 120.00357 * 172.58337 * 14 11 9 16 16 C 1.40213 * 120.25061 * 326.26749 * 15 14 11 17 17 C 1.37636 * 119.86836 * 179.97438 * 16 15 14 18 18 C 1.38717 * 120.38814 * 0.02562 * 17 16 15 19 19 C 1.38036 * 120.51612 * 359.97438 * 18 17 16 20 20 C 1.38781 * 120.11790 * 359.74317 * 19 18 17 21 21 O 1.35439 * 120.19604 * 180.27477 * 20 19 18 22 22 C 1.34747 * 116.99865 * 6.10805 * 21 20 19 23 23 H 1.07992 * 120.00013 * 5.38317 * 22 21 20 24 24 C 1.38766 * 119.99769 * 185.38976 * 22 21 20 25 25 N 1.31476 * 120.00313 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00070 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46731 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47029 * 119.99653 * 26 24 22 29 29 H 1.48492 * 109.47190 * 239.99640 * 26 24 22 30 30 H 1.08993 * 109.46924 * 270.02121 * 1 2 3 31 31 H 1.09005 * 109.46538 * 30.01627 * 1 2 3 32 32 H 1.08998 * 109.47165 * 150.01209 * 1 2 3 33 33 H 1.07995 * 119.96411 * 0.02562 * 3 2 1 34 34 H 1.08006 * 119.92797 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.96146 * 179.97438 * 5 4 3 36 36 H 1.07996 * 120.04054 * 180.29323 * 6 5 4 37 37 H 0.97006 * 120.00101 * 333.80809 * 8 7 2 38 38 H 1.08001 * 120.00024 * 352.58806 * 14 11 9 39 39 H 1.08000 * 120.06490 * 359.97438 * 16 15 14 40 40 H 1.08000 * 119.80406 * 179.97438 * 17 16 15 41 41 H 1.08004 * 119.73924 * 179.97438 * 18 17 16 42 42 H 1.08001 * 119.94343 * 180.02562 * 19 18 17 43 43 H 0.96996 * 120.00120 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1966 0.0005 5 6 4.2763 0.0010 0.0005 6 6 3.5913 -1.1978 0.0063 7 6 2.2021 -1.2023 0.0005 8 7 1.5053 -2.4146 0.0016 9 6 2.0771 -3.5211 -0.5132 10 8 3.2262 -3.4830 -0.9110 11 6 1.3122 -4.7746 -0.5941 12 6 -0.0402 -4.8196 -0.1253 13 7 -1.1134 -4.8551 0.2432 14 6 1.8992 -5.9082 -1.1156 15 6 1.1995 -7.1914 -1.0484 16 6 0.3753 -7.4901 0.0459 17 6 -0.2796 -8.6994 0.1007 18 6 -0.1290 -9.6259 -0.9206 19 6 0.6784 -9.3485 -2.0052 20 6 1.3441 -8.1333 -2.0851 21 8 2.1323 -7.8572 -3.1513 22 6 2.1299 -8.7493 -4.1612 23 1 1.4536 -9.5909 -4.1366 24 6 2.9966 -8.5867 -5.2326 25 7 3.8198 -7.5620 -5.2627 26 14 2.9939 -9.8239 -6.6323 27 1 1.9827 -10.8768 -6.3602 28 1 2.6598 -9.1325 -7.9033 29 1 4.3375 -10.4460 -6.7456 30 1 -0.3633 0.0004 1.0276 31 1 -0.3632 0.8899 -0.5141 32 1 -0.3633 -0.8901 -0.5136 33 1 1.6585 2.1311 0.0004 34 1 4.1194 2.1330 0.0010 35 1 5.3564 0.0051 0.0005 36 1 4.1348 -2.1311 0.0110 37 1 0.6101 -2.4592 0.3728 38 1 2.8755 -5.8489 -1.5735 39 1 0.2546 -6.7727 0.8441 40 1 -0.9139 -8.9286 0.9443 41 1 -0.6475 -10.5718 -0.8666 42 1 0.7887 -10.0764 -2.7954 43 1 4.4253 -7.4481 -6.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032752065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:21 Heat of formation + Delta-G solvation = 27.190970 kcal Electronic energy + Delta-G solvation = -28485.314445 eV Core-core repulsion = 24461.403917 eV Total energy + Delta-G solvation = -4023.910528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.126 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.88881 -41.04881 -39.70538 -38.64766 -37.66524 -36.00578 -34.98816 -34.39198 -33.50991 -31.65760 -30.85478 -30.18391 -27.82082 -27.44335 -26.01855 -24.17998 -23.31249 -22.48687 -22.43265 -21.90220 -20.03047 -19.83515 -18.85477 -18.29786 -17.06535 -16.92911 -16.72668 -16.47938 -16.30213 -16.00327 -15.94636 -15.59476 -15.50221 -15.33158 -14.89308 -14.77730 -14.54933 -14.44012 -14.18500 -14.13102 -13.89345 -13.60551 -13.49784 -13.29950 -13.18134 -13.05031 -12.68443 -12.52104 -12.43001 -12.34412 -12.17003 -12.10068 -11.59406 -11.41571 -11.13102 -10.88601 -10.84823 -9.68056 -9.63973 -9.12147 -8.94193 -8.55285 -6.21202 -0.83242 0.31099 0.47423 0.57891 0.74841 1.37037 1.44189 1.45632 1.49970 1.54651 1.86687 2.11991 2.38928 2.74983 2.79423 2.88973 3.08196 3.21987 3.44299 3.87428 3.92490 3.95297 4.03541 4.15746 4.26199 4.33027 4.40072 4.42791 4.49377 4.57541 4.69275 4.73933 4.78709 4.81342 4.87391 5.00065 5.03708 5.09954 5.24156 5.34349 5.43529 5.47060 5.51444 5.57416 5.60093 5.65811 5.89775 6.01717 6.12146 6.23200 6.32058 6.88005 6.90441 7.58928 8.65136 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.002824 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.932068 B = 9913.132162 C =11822.065624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.123 4.123 3 C -0.102 4.102 4 C -0.134 4.134 5 C -0.115 4.115 6 C -0.154 4.154 7 C 0.124 3.876 8 N -0.657 5.657 9 C 0.582 3.418 10 O -0.541 6.541 11 C -0.184 4.184 12 C 0.275 3.725 13 N -0.434 5.434 14 C 0.132 3.868 15 C -0.206 4.206 16 C -0.040 4.040 17 C -0.200 4.200 18 C -0.034 4.034 19 C -0.245 4.245 20 C 0.156 3.844 21 O -0.199 6.199 22 C -0.416 4.416 23 H 0.111 0.889 24 C -0.012 4.012 25 N -0.902 5.902 26 Si 1.016 2.984 27 H -0.247 1.247 28 H -0.271 1.271 29 H -0.269 1.269 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.417 0.583 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.134 0.866 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 10.072 11.098 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.153 4.153 5 C -0.134 4.134 6 C -0.175 4.175 7 C 0.030 3.970 8 N -0.300 5.300 9 C 0.372 3.628 10 O -0.420 6.420 11 C -0.192 4.192 12 C -0.038 4.038 13 N -0.111 5.111 14 C 0.108 3.892 15 C -0.208 4.208 16 C -0.058 4.058 17 C -0.218 4.218 18 C -0.052 4.052 19 C -0.264 4.264 20 C 0.101 3.899 21 O -0.102 6.102 22 C -0.491 4.491 23 H 0.128 0.872 24 C -0.213 4.213 25 N -0.537 5.537 26 Si 0.836 3.164 27 H -0.170 1.170 28 H -0.196 1.196 29 H -0.194 1.194 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.254 0.746 38 H 0.158 0.842 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.174 0.826 42 H 0.151 0.849 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.154 10.304 11.175 16.399 hybrid contribution 0.525 -0.728 -0.899 1.271 sum -5.629 9.576 10.275 15.131 Atomic orbital electron populations 1.20799 0.89514 1.03541 1.03368 1.19954 0.97262 0.91431 1.03870 1.21204 0.94414 0.97332 0.99094 1.21484 0.94562 0.98592 1.00623 1.21325 1.00921 0.91839 0.99301 1.21661 0.93083 1.00471 1.02242 1.17898 0.91747 0.84855 1.02505 1.43206 1.19894 1.07148 1.59750 1.17644 0.85777 0.82828 0.76554 1.90782 1.17837 1.84413 1.48958 1.17559 0.88897 0.94876 1.17830 1.25159 0.92313 0.93378 0.92913 1.81203 1.11147 1.07787 1.10998 1.22952 0.96362 0.89193 0.80711 1.18218 1.09031 0.94886 0.98664 1.21318 0.91882 0.97394 0.95193 1.21082 1.04714 0.94496 1.01517 1.21467 0.93352 0.99487 0.90929 1.21359 1.04711 0.97599 1.02764 1.19968 0.89780 0.92908 0.87204 1.83840 1.55766 1.46645 1.23994 1.21969 1.22924 1.07358 0.96852 0.87190 1.26591 0.94084 0.99574 1.01015 1.70135 1.21463 1.29581 1.32522 0.84552 0.79263 0.76895 0.75734 1.17048 1.19627 1.19390 0.89658 0.89144 0.92812 0.82771 0.83181 0.84419 0.85145 0.74552 0.84204 0.85104 0.83173 0.82643 0.84881 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 9.45 71.24 0.67 -1.22 16 2 C -0.12 -2.66 5.90 -19.74 -0.12 -2.77 16 3 C -0.10 -1.83 9.70 22.25 0.22 -1.62 16 4 C -0.13 -2.47 10.04 22.29 0.22 -2.25 16 5 C -0.12 -2.67 10.04 22.25 0.22 -2.45 16 6 C -0.15 -4.52 8.78 22.40 0.20 -4.32 16 7 C 0.12 3.42 6.42 38.18 0.25 3.66 16 8 N -0.66 -18.26 4.89 -306.74 -1.50 -19.76 16 9 C 0.58 19.59 7.63 86.56 0.66 20.25 16 10 O -0.54 -21.56 13.26 -4.22 -0.06 -21.61 16 11 C -0.18 -6.15 5.82 -19.79 -0.12 -6.27 16 12 C 0.28 8.56 10.58 88.34 0.93 9.49 16 13 N -0.43 -13.58 18.17 19.00 0.35 -13.24 16 14 C 0.13 5.04 9.01 24.29 0.22 5.26 16 15 C -0.21 -8.05 5.53 -20.07 -0.11 -8.16 16 16 C -0.04 -1.29 8.29 22.61 0.19 -1.10 16 17 C -0.20 -5.72 10.02 22.24 0.22 -5.50 16 18 C -0.03 -1.02 10.03 22.34 0.22 -0.80 16 19 C -0.25 -9.36 9.12 22.35 0.20 -9.16 16 20 C 0.16 6.96 6.67 23.03 0.15 7.11 16 21 O -0.20 -10.75 9.19 -18.50 -0.17 -10.92 16 22 C -0.42 -21.92 9.44 67.95 0.64 -21.28 16 23 H 0.11 5.23 5.30 -2.91 -0.02 5.22 16 24 C -0.01 -0.63 5.50 84.87 0.47 -0.16 16 25 N -0.90 -51.86 13.67 21.63 0.30 -51.56 16 26 Si 1.02 39.68 29.55 68.60 2.03 41.71 16 27 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 28 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 29 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.15 8.09 -2.38 -0.02 1.13 16 32 H 0.05 0.99 7.01 -2.39 -0.02 0.97 16 33 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.13 4.42 5.58 -2.91 -0.02 4.40 16 37 H 0.42 9.79 6.34 -92.70 -0.59 9.20 16 38 H 0.14 5.97 7.58 -2.91 -0.02 5.94 16 39 H 0.13 3.87 5.91 -2.91 -0.02 3.85 16 40 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 42 H 0.13 5.05 5.72 -2.91 -0.02 5.03 16 43 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -67.16 376.30 6.79 -60.36 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: 0.50 Total: 36.30 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 5.35 Total: -21.28 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -0.86 Total: -84.56 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.23 Total: -32.53 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -67.16 6.79 -60.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032752065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.556 kcal (2) G-P(sol) polarization free energy of solvation -67.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds