Wall clock time and date at job start Tue Mar 31 2020 05:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38308 * 119.96082 * 2 1 4 4 C 1.38268 * 120.14313 * 179.97438 * 3 2 1 5 5 C 1.38129 * 120.06972 * 0.27721 * 4 3 2 6 6 C 1.38872 * 119.92714 * 359.46425 * 5 4 3 7 7 N 1.39839 * 120.07388 * 180.29756 * 6 5 4 8 8 C 1.34775 * 120.00265 * 215.58768 * 7 6 5 9 9 O 1.21662 * 119.99894 * 4.91595 * 8 7 6 10 10 C 1.47073 * 119.99946 * 184.91165 * 8 7 6 11 11 C 1.43202 * 120.00186 * 0.02562 * 10 8 7 12 12 N 7.19559 * 134.97163 * 170.31889 * 2 1 3 13 13 C 1.37895 * 120.00024 * 180.02562 * 10 8 7 14 14 C 1.46310 * 120.00348 * 173.48200 * 13 10 8 15 15 C 1.40206 * 120.24826 * 321.55857 * 14 13 10 16 16 C 1.37631 * 119.87305 * 179.97438 * 15 14 13 17 17 C 1.38723 * 120.38566 * 0.02562 * 16 15 14 18 18 C 1.38044 * 120.51398 * 359.97438 * 17 16 15 19 19 C 1.38781 * 120.11738 * 359.74335 * 18 17 16 20 20 O 1.35439 * 120.19680 * 180.25456 * 19 18 17 21 21 C 1.34750 * 116.99414 * 5.47979 * 20 19 18 22 22 H 1.07995 * 120.00340 * 5.28801 * 21 20 19 23 23 C 1.38773 * 119.99481 * 185.29002 * 21 20 19 24 24 N 1.31476 * 119.99973 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99837 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47012 * 89.99857 * 25 23 21 27 27 H 1.48503 * 109.46848 * 209.99551 * 25 23 21 28 28 H 1.48496 * 109.46957 * 329.99356 * 25 23 21 29 29 C 1.38081 * 119.96004 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.47220 * 90.00295 * 1 2 3 31 31 H 1.08992 * 109.47413 * 210.00488 * 1 2 3 32 32 H 1.09007 * 109.47445 * 330.00541 * 1 2 3 33 33 H 1.07993 * 119.92911 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.96049 * 179.97438 * 4 3 2 35 35 H 1.08003 * 120.03309 * 179.74779 * 5 4 3 36 36 H 0.97000 * 119.99770 * 35.58519 * 7 6 5 37 37 H 1.08002 * 120.00146 * 353.47523 * 13 10 8 38 38 H 1.08007 * 120.06857 * 359.97438 * 15 14 13 39 39 H 1.07997 * 119.81212 * 179.97438 * 16 15 14 40 40 H 1.08000 * 119.74213 * 179.97438 * 17 16 15 41 41 H 1.08004 * 119.93946 * 180.02562 * 18 17 16 42 42 H 0.97004 * 119.99393 * 180.02562 * 24 23 21 43 43 H 1.07995 * 120.04300 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2027 0.0005 5 6 4.2763 0.0095 -0.0047 6 6 3.5858 -1.1954 0.0007 7 7 4.2872 -2.4051 0.0017 8 6 3.8020 -3.4660 -0.6731 9 8 2.8019 -3.3472 -1.3557 10 6 4.4815 -4.7674 -0.5844 11 6 5.6583 -4.9073 0.2194 12 7 6.5925 -5.0181 0.8561 13 6 3.9854 -5.8527 -1.2753 14 6 4.7367 -7.1078 -1.3033 15 6 6.1354 -7.0917 -1.3984 16 6 6.8345 -8.2770 -1.4236 17 6 6.1633 -9.4891 -1.3561 18 6 4.7865 -9.5236 -1.2622 19 6 4.0609 -8.3410 -1.2292 20 8 2.7104 -8.3729 -1.1319 21 6 2.1382 -9.5802 -0.9565 22 1 2.7554 -10.4549 -0.8141 23 6 0.7556 -9.6996 -0.9589 24 7 0.0041 -8.6347 -1.1318 25 14 -0.0378 -11.3731 -0.7151 26 1 -0.2687 -11.6051 0.7333 27 1 -1.3354 -11.4154 -1.4362 28 1 0.8597 -12.4288 -1.2488 29 6 2.1966 -1.1963 0.0005 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3634 0.8901 0.5138 33 1 1.6560 2.1325 -0.0004 34 1 4.1168 2.1400 0.0001 35 1 5.3563 0.0136 -0.0084 36 1 5.1231 -2.4806 0.4881 37 1 3.0420 -5.7764 -1.7957 38 1 6.6634 -6.1510 -1.4517 39 1 7.9119 -8.2634 -1.4973 40 1 6.7222 -10.4130 -1.3771 41 1 4.2734 -10.4725 -1.2097 42 1 -0.9623 -8.7181 -1.1331 43 1 1.6567 -2.1316 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032752475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:28 Heat of formation + Delta-G solvation = 34.641576 kcal Electronic energy + Delta-G solvation = -28305.705590 eV Core-core repulsion = 24282.118145 eV Total energy + Delta-G solvation = -4023.587445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.126 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.53842 -39.49653 -38.61068 -37.08080 -36.19007 -34.97543 -33.49601 -32.63173 -32.45058 -30.36827 -29.42252 -28.87304 -26.99284 -25.69812 -24.69992 -22.91651 -21.89945 -21.42020 -21.02788 -20.66131 -18.52827 -18.32481 -17.32337 -16.84472 -16.23622 -15.63438 -15.43667 -15.03522 -14.85064 -14.61404 -14.48521 -14.28442 -14.01346 -13.92583 -13.75626 -13.67135 -13.26947 -13.10882 -12.94726 -12.72780 -12.52222 -12.36507 -12.15474 -12.04182 -11.94789 -11.62552 -11.60791 -11.23482 -11.15272 -11.00131 -10.94520 -10.63365 -10.29970 -9.90653 -9.77039 -9.50298 -9.12222 -8.73281 -8.24617 -8.08869 -7.45432 -6.77226 -4.32613 0.64606 1.27907 1.38601 2.08043 2.16177 2.82519 2.88282 2.97867 2.98483 3.03764 3.10466 3.69989 3.71527 3.88371 4.25572 4.28732 4.71418 4.79331 4.82359 4.82755 4.90531 5.10639 5.24815 5.29651 5.35840 5.42926 5.52942 5.54450 5.60273 5.68629 5.77355 5.88097 5.88428 6.02820 6.12693 6.28823 6.33013 6.35589 6.36057 6.46390 6.49726 6.62792 6.79434 6.91938 7.03341 7.03951 7.08249 7.37715 7.46387 7.65185 7.75398 8.20259 8.65712 9.27375 10.37784 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.010032 B = 0.002908 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.272174 B = 9626.134746 C =12124.681526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.099 4.099 5 C -0.155 4.155 6 C 0.159 3.841 7 N -0.678 5.678 8 C 0.584 3.416 9 O -0.514 6.514 10 C -0.208 4.208 11 C 0.267 3.733 12 N -0.439 5.439 13 C 0.147 3.853 14 C -0.206 4.206 15 C -0.031 4.031 16 C -0.218 4.218 17 C -0.046 4.046 18 C -0.231 4.231 19 C 0.181 3.819 20 O -0.149 6.149 21 C -0.395 4.395 22 H 0.099 0.901 23 C 0.045 3.955 24 N -0.839 5.839 25 Si 0.945 3.055 26 H -0.270 1.270 27 H -0.274 1.274 28 H -0.265 1.265 29 C -0.119 4.119 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.408 0.592 37 H 0.159 0.841 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.135 0.865 42 H 0.278 0.722 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.953 11.742 0.948 12.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.068 4.068 3 C -0.160 4.160 4 C -0.118 4.118 5 C -0.176 4.176 6 C 0.065 3.935 7 N -0.322 5.322 8 C 0.374 3.626 9 O -0.390 6.390 10 C -0.216 4.216 11 C -0.046 4.046 12 N -0.117 5.117 13 C 0.123 3.877 14 C -0.208 4.208 15 C -0.050 4.050 16 C -0.237 4.237 17 C -0.065 4.065 18 C -0.250 4.250 19 C 0.122 3.878 20 O -0.048 6.048 21 C -0.470 4.470 22 H 0.116 0.884 23 C -0.163 4.163 24 N -0.470 5.470 25 Si 0.769 3.231 26 H -0.195 1.195 27 H -0.199 1.199 28 H -0.189 1.189 29 C -0.139 4.139 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.244 0.756 37 H 0.176 0.824 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.153 0.847 42 H 0.088 0.912 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.184 11.841 1.429 13.005 hybrid contribution -0.126 -0.965 0.096 0.978 sum 5.058 10.876 1.525 12.091 Atomic orbital electron populations 1.20800 0.90953 1.02741 1.02619 1.19812 0.96228 0.92534 0.98232 1.20976 0.94178 0.97413 1.03425 1.20863 0.94150 0.97214 0.99554 1.20885 0.99771 0.91277 1.05619 1.17701 0.91465 0.84944 0.99373 1.43417 1.26437 1.10016 1.52364 1.17656 0.83699 0.82771 0.78451 1.90863 1.24735 1.83900 1.39494 1.17657 0.97760 0.95669 1.10486 1.25459 0.92476 0.93753 0.92894 1.81209 1.11582 1.07316 1.11580 1.23106 0.94544 0.87613 0.82388 1.17953 0.92698 0.90263 1.19899 1.20993 0.91416 0.97961 0.94587 1.20542 0.99027 0.92311 1.11789 1.21018 0.93804 0.97332 0.94320 1.21171 0.94277 0.98464 1.11049 1.19386 0.84677 0.92219 0.91471 1.83846 1.13785 1.33499 1.73699 1.21509 0.90422 0.84045 1.50994 0.88356 1.25431 0.95118 0.99923 0.95820 1.69991 1.06231 1.28957 1.41774 0.85635 0.78911 0.79502 0.79058 1.19513 1.19875 1.18888 1.21114 0.92473 0.99006 1.01304 0.90905 0.91255 0.91646 0.86199 0.85883 0.85933 0.75583 0.82353 0.86695 0.86972 0.86807 0.84749 0.91220 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.01 0.36 -0.77 16 2 C -0.07 -0.82 5.88 -104.65 -0.62 -1.43 16 3 C -0.14 -1.48 9.70 -39.54 -0.38 -1.86 16 4 C -0.10 -1.00 10.04 -39.61 -0.40 -1.40 16 5 C -0.16 -1.75 9.97 -39.39 -0.39 -2.14 16 6 C 0.16 2.18 6.24 -83.72 -0.52 1.65 16 7 N -0.68 -9.34 5.28 -10.93 -0.06 -9.39 16 8 C 0.58 9.53 7.48 -12.68 -0.09 9.43 16 9 O -0.51 -9.74 14.11 5.22 0.07 -9.67 16 10 C -0.21 -3.43 5.82 -104.51 -0.61 -4.04 16 11 C 0.27 4.36 10.75 -22.47 -0.24 4.12 16 12 N -0.44 -7.50 18.42 41.83 0.77 -6.73 16 13 C 0.15 2.68 8.98 -36.46 -0.33 2.35 16 14 C -0.21 -3.97 5.44 -104.94 -0.57 -4.54 16 15 C -0.03 -0.54 8.31 -39.06 -0.32 -0.86 16 16 C -0.22 -3.55 10.02 -39.62 -0.40 -3.95 16 17 C -0.05 -0.76 10.03 -39.47 -0.40 -1.16 16 18 C -0.23 -4.47 9.12 -39.45 -0.36 -4.83 16 19 C 0.18 3.90 6.67 -38.41 -0.26 3.65 16 20 O -0.15 -3.75 9.21 1.23 0.01 -3.74 16 21 C -0.39 -9.85 9.45 30.93 0.29 -9.56 16 22 H 0.10 2.24 5.29 -52.49 -0.28 1.97 16 23 C 0.05 1.12 5.50 -17.51 -0.10 1.03 16 24 N -0.84 -22.33 13.67 55.49 0.76 -21.57 16 25 Si 0.95 18.61 29.55 -169.99 -5.02 13.59 16 26 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 27 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 28 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 29 C -0.12 -1.71 8.30 -39.39 -0.33 -2.03 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.06 0.52 8.09 -51.92 -0.42 0.10 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 36 H 0.41 4.86 7.71 -40.82 -0.31 4.54 16 37 H 0.16 3.02 7.61 -52.49 -0.40 2.62 16 38 H 0.12 1.83 6.43 -52.48 -0.34 1.50 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.13 2.55 5.71 -52.48 -0.30 2.25 16 42 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 43 H 0.14 2.20 6.56 -52.49 -0.34 1.86 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -28.77 381.46 -7.86 -36.63 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -4.48 Total: 11.49 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -5.66 Total: -16.35 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 1.47 Total: -37.70 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.41 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.77 -7.86 -36.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032752475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.269 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds