Wall clock time and date at job start Tue Mar 31 2020 05:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38336 * 119.87092 * 269.72929 * 3 2 1 5 5 C 1.38005 * 120.12412 * 179.72209 * 4 3 2 6 6 C 1.39385 * 119.87188 * 0.56744 * 5 4 3 7 7 C 1.48307 * 120.12541 * 179.68255 * 6 5 4 8 8 C 1.34512 * 122.31263 * 0.02562 * 7 6 5 9 9 S 1.76218 * 108.21429 * 179.97438 * 8 7 6 10 10 C 1.76104 * 90.01629 * 0.02562 * 9 8 7 11 11 N 1.38952 * 125.31005 * 180.02562 * 10 9 8 12 12 C 1.34773 * 119.99664 * 359.97438 * 11 10 9 13 13 O 1.21288 * 120.00383 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99946 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.47294 * 180.02562 * 14 12 11 16 16 C 1.76193 * 100.00171 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00225 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00131 * 180.02562 * 16 15 14 19 19 N 1.31632 * 119.99922 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00025 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47028 * 90.00166 * 20 18 16 22 22 H 1.48501 * 109.46980 * 209.99801 * 20 18 16 23 23 H 1.48494 * 109.47426 * 329.99726 * 20 18 16 24 24 N 1.29657 * 109.38610 * 359.75491 * 10 9 8 25 25 C 1.39395 * 119.75032 * 359.70645 * 6 5 4 26 26 C 1.38002 * 119.86985 * 359.97438 * 25 6 5 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 32 32 H 1.07996 * 119.93579 * 359.96838 * 4 3 2 33 33 H 1.08000 * 120.06431 * 180.26897 * 5 4 3 34 34 H 1.08000 * 125.89286 * 359.97438 * 8 7 6 35 35 H 0.96996 * 120.00342 * 179.97438 * 11 10 9 36 36 H 1.08996 * 109.47595 * 300.00024 * 14 12 11 37 37 H 1.08996 * 109.47261 * 60.00332 * 14 12 11 38 38 H 0.97002 * 119.99876 * 179.97438 * 19 18 16 39 39 H 1.07994 * 120.06396 * 180.02562 * 25 6 5 40 40 H 1.07994 * 119.93472 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2674 2.0685 -1.1996 5 6 2.7220 3.3716 -1.2057 6 6 2.9556 4.0310 -0.0001 7 6 3.4508 5.4289 -0.0002 8 6 3.6905 6.1068 -1.1370 9 16 4.2607 7.7180 -0.7078 10 6 4.1188 7.3137 1.0003 11 7 4.4206 8.1663 2.0552 12 6 4.8622 9.4152 1.8070 13 8 4.9967 9.7948 0.6629 14 6 5.1889 10.3402 2.9510 15 16 5.7511 11.9321 2.2982 16 6 6.0553 12.7909 3.8063 17 1 5.8817 12.2995 4.7521 18 6 6.5171 14.0996 3.7787 19 7 6.7283 14.6988 2.6258 20 14 6.8390 15.0104 5.3775 21 1 8.2446 14.7858 5.8008 22 1 6.6094 16.4634 5.1743 23 1 5.9190 14.5061 6.4284 24 7 3.6834 6.0983 1.1202 25 6 2.7224 3.3714 1.2056 26 6 2.2615 2.0707 1.1995 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.0910 1.5548 -2.1330 33 1 2.9010 3.8777 -2.1428 34 1 3.5565 5.7288 -2.1398 35 1 4.3134 7.8627 2.9701 36 1 4.2986 10.4921 3.5611 37 1 5.9767 9.8989 3.5614 38 1 7.0506 15.6135 2.6065 39 1 2.9013 3.8777 2.1426 40 1 2.0802 1.5588 2.1329 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032833263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:11 Heat of formation + Delta-G solvation = 25.775195 kcal Electronic energy + Delta-G solvation = -23220.729569 eV Core-core repulsion = 19639.121376 eV Total energy + Delta-G solvation = -3581.608193 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.071 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.44867 -39.84409 -38.69538 -35.19439 -34.18346 -32.53511 -31.40670 -30.88601 -29.61073 -28.32752 -25.65497 -25.23693 -23.77668 -22.60078 -21.58894 -21.35113 -19.93145 -18.32278 -17.85665 -16.79782 -16.62001 -16.43342 -15.84416 -15.48788 -15.27718 -14.89370 -14.48832 -14.42167 -14.19684 -13.96243 -13.76330 -13.61278 -13.51806 -13.08653 -12.76664 -12.71276 -12.48362 -12.14352 -11.69408 -11.52463 -11.18136 -11.12756 -11.10692 -11.05219 -11.01727 -10.86999 -9.96107 -9.88114 -9.79028 -9.39441 -9.16690 -9.15134 -9.00442 -8.43052 -7.88879 -6.65651 -6.32378 -4.05358 0.46243 1.09104 1.12266 1.21430 1.85749 2.42218 2.43030 2.96183 3.15653 3.16903 3.24212 3.36371 3.73993 4.08628 4.21041 4.43789 4.53411 4.75023 4.78328 4.85002 4.99049 5.03663 5.06564 5.12070 5.19987 5.24343 5.39431 5.41940 5.51709 5.60795 5.60957 5.64434 5.76346 5.84072 5.87963 5.89991 6.07289 6.28797 6.34447 6.38026 6.75472 6.87400 7.49938 7.71054 7.90176 8.24629 9.13381 10.74993 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.033197 B = 0.001715 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.249597 B =16318.765304 C =17052.641052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.119 4.119 5 C -0.101 4.101 6 C -0.019 4.019 7 C 0.125 3.875 8 C -0.305 4.305 9 S 0.211 5.789 10 C 0.289 3.711 11 N -0.626 5.626 12 C 0.532 3.468 13 O -0.477 6.477 14 C -0.150 4.150 15 S -0.051 6.051 16 C -0.539 4.539 17 H 0.075 0.925 18 C 0.075 3.925 19 N -0.866 5.866 20 Si 0.921 3.079 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.271 1.271 24 N -0.510 5.510 25 C -0.084 4.084 26 C -0.121 4.121 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.175 0.825 35 H 0.424 0.576 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.270 0.730 39 H 0.132 0.868 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.823 -26.709 -5.382 28.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.137 4.137 5 C -0.120 4.120 6 C -0.022 4.022 7 C -0.006 4.006 8 C -0.445 4.445 9 S 0.462 5.538 10 C -0.081 4.081 11 N -0.278 5.278 12 C 0.318 3.682 13 O -0.348 6.348 14 C -0.300 4.300 15 S 0.176 5.824 16 C -0.687 4.687 17 H 0.094 0.906 18 C -0.134 4.134 19 N -0.501 5.501 20 Si 0.747 3.253 21 H -0.202 1.202 22 H -0.207 1.207 23 H -0.196 1.196 24 N -0.233 5.233 25 C -0.103 4.103 26 C -0.139 4.139 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.192 0.808 35 H 0.263 0.737 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.150 0.850 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.253 -25.057 -7.361 27.706 hybrid contribution -0.270 -0.798 2.837 2.959 sum -9.524 -25.855 -4.524 27.922 Atomic orbital electron populations 1.21752 0.94682 1.01664 1.02343 1.20555 0.96214 0.92671 1.02834 1.19978 0.98745 0.96242 0.93232 1.20880 1.00701 0.94568 0.97578 1.21112 0.99137 0.94668 0.97084 1.18123 1.00192 0.90143 0.93739 1.18128 1.01738 0.94450 0.86287 1.27282 1.13170 1.00823 1.03249 1.86184 1.61470 1.08507 0.97596 1.24153 0.99605 0.90789 0.93529 1.43094 1.64353 1.12171 1.08145 1.20913 0.75296 0.80040 0.91908 1.90668 1.48804 1.72958 1.22398 1.23524 1.05621 1.02335 0.98547 1.85455 1.84826 1.00695 1.11472 1.22840 1.52288 1.00959 0.92637 0.90641 1.24996 0.94545 0.96385 0.97513 1.70003 1.42265 1.13242 1.24597 0.86135 0.78797 0.78623 0.81772 1.20181 1.20678 1.19621 1.66205 1.20851 1.04931 1.31320 1.21282 0.96961 0.94064 0.98032 1.20987 1.00509 0.94831 0.97562 0.92438 0.92514 0.92490 0.91038 0.91056 0.85914 0.85741 0.80764 0.73700 0.88039 0.88038 0.92013 0.85004 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.44 16 2 C -0.09 -0.51 6.06 -27.88 -0.17 -0.68 16 3 C -0.08 -0.67 5.14 -104.55 -0.54 -1.21 16 4 C -0.12 -0.99 9.68 -39.63 -0.38 -1.37 16 5 C -0.10 -0.96 9.47 -39.24 -0.37 -1.33 16 6 C -0.02 -0.22 5.88 -104.90 -0.62 -0.84 16 7 C 0.12 1.65 6.61 -84.72 -0.56 1.09 16 8 C -0.30 -3.68 10.57 29.42 0.31 -3.36 16 9 S 0.21 3.02 20.54 -107.50 -2.21 0.81 16 10 C 0.29 4.24 8.39 -87.37 -0.73 3.51 16 11 N -0.63 -8.61 5.40 -11.83 -0.06 -8.67 16 12 C 0.53 9.02 7.81 -10.99 -0.09 8.94 16 13 O -0.48 -9.54 13.38 5.55 0.07 -9.46 16 14 C -0.15 -2.71 6.16 36.01 0.22 -2.48 16 15 S -0.05 -1.28 20.57 -107.50 -2.21 -3.49 16 16 C -0.54 -14.57 9.50 30.94 0.29 -14.28 16 17 H 0.08 1.92 7.80 -52.49 -0.41 1.51 16 18 C 0.08 2.06 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.16 13.22 55.49 0.73 -24.43 16 20 Si 0.92 20.66 29.55 -169.99 -5.02 15.64 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 N -0.51 -7.29 9.90 -10.41 -0.10 -7.39 16 25 C -0.08 -0.92 9.63 -39.24 -0.38 -1.30 16 26 C -0.12 -1.09 9.68 -39.63 -0.38 -1.48 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.12 0.96 6.59 -52.49 -0.35 0.61 16 34 H 0.18 1.58 6.81 -52.49 -0.36 1.22 16 35 H 0.42 4.50 8.82 -40.82 -0.36 4.14 16 36 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 37 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 39 H 0.13 1.46 7.67 -52.49 -0.40 1.06 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -32.29 372.83 -11.11 -43.40 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.81 Total: 1.26 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -3.12 Total: -13.28 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.57 Total: -40.49 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.46 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -4.42 Total: -2.69 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.29 -11.11 -43.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032833263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.176 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds