Wall clock time and date at job start Tue Mar 31 2020 05:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38336 * 119.87092 * 269.72929 * 3 2 1 5 5 C 1.38005 * 120.12412 * 179.72209 * 4 3 2 6 6 C 1.39385 * 119.87188 * 0.56744 * 5 4 3 7 7 C 1.48307 * 120.12541 * 179.68255 * 6 5 4 8 8 C 1.34512 * 122.31263 * 0.02562 * 7 6 5 9 9 S 1.76218 * 108.21429 * 179.97438 * 8 7 6 10 10 C 1.76104 * 90.01629 * 0.02562 * 9 8 7 11 11 N 1.38952 * 125.31005 * 180.02562 * 10 9 8 12 12 C 1.34773 * 119.99664 * 359.97438 * 11 10 9 13 13 O 1.21288 * 120.00383 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99946 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.47294 * 180.02562 * 14 12 11 16 16 C 1.76193 * 100.00171 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00225 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00131 * 180.02562 * 16 15 14 19 19 N 1.31632 * 119.99922 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00025 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47028 * 90.00166 * 20 18 16 22 22 H 1.48501 * 109.46980 * 209.99801 * 20 18 16 23 23 H 1.48494 * 109.47426 * 329.99726 * 20 18 16 24 24 N 1.29657 * 109.38610 * 359.75491 * 10 9 8 25 25 C 1.39395 * 119.75032 * 359.70645 * 6 5 4 26 26 C 1.38002 * 119.86985 * 359.97438 * 25 6 5 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 32 32 H 1.07996 * 119.93579 * 359.96838 * 4 3 2 33 33 H 1.08000 * 120.06431 * 180.26897 * 5 4 3 34 34 H 1.08000 * 125.89286 * 359.97438 * 8 7 6 35 35 H 0.96996 * 120.00342 * 179.97438 * 11 10 9 36 36 H 1.08996 * 109.47595 * 300.00024 * 14 12 11 37 37 H 1.08996 * 109.47261 * 60.00332 * 14 12 11 38 38 H 0.97002 * 119.99876 * 179.97438 * 19 18 16 39 39 H 1.07994 * 120.06396 * 180.02562 * 25 6 5 40 40 H 1.07994 * 119.93472 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2674 2.0685 -1.1996 5 6 2.7220 3.3716 -1.2057 6 6 2.9556 4.0310 -0.0001 7 6 3.4508 5.4289 -0.0002 8 6 3.6905 6.1068 -1.1370 9 16 4.2607 7.7180 -0.7078 10 6 4.1188 7.3137 1.0003 11 7 4.4206 8.1663 2.0552 12 6 4.8622 9.4152 1.8070 13 8 4.9967 9.7948 0.6629 14 6 5.1889 10.3402 2.9510 15 16 5.7511 11.9321 2.2982 16 6 6.0553 12.7909 3.8063 17 1 5.8817 12.2995 4.7521 18 6 6.5171 14.0996 3.7787 19 7 6.7283 14.6988 2.6258 20 14 6.8390 15.0104 5.3775 21 1 8.2446 14.7858 5.8008 22 1 6.6094 16.4634 5.1743 23 1 5.9190 14.5061 6.4284 24 7 3.6834 6.0983 1.1202 25 6 2.7224 3.3714 1.2056 26 6 2.2615 2.0707 1.1995 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.0910 1.5548 -2.1330 33 1 2.9010 3.8777 -2.1428 34 1 3.5565 5.7288 -2.1398 35 1 4.3134 7.8627 2.9701 36 1 4.2986 10.4921 3.5611 37 1 5.9767 9.8989 3.5614 38 1 7.0506 15.6135 2.6065 39 1 2.9013 3.8777 2.1426 40 1 2.0802 1.5588 2.1329 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032833263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:10 Heat of formation + Delta-G solvation = 8.086267 kcal Electronic energy + Delta-G solvation = -23221.496618 eV Core-core repulsion = 19639.121376 eV Total energy + Delta-G solvation = -3582.375242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.071 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.59254 -40.86748 -39.60408 -36.31022 -34.92277 -34.58916 -32.25484 -31.79450 -30.76110 -29.21765 -27.69696 -26.15574 -24.56593 -23.34733 -22.70294 -22.21133 -20.92731 -19.80254 -19.34961 -17.93405 -17.86769 -17.27322 -17.13380 -16.87890 -16.22080 -16.08035 -15.93518 -15.62113 -15.28870 -14.93691 -14.58624 -14.55249 -14.31155 -14.16548 -13.97021 -13.86205 -13.37577 -13.18842 -12.90519 -12.87099 -12.65562 -12.53218 -12.11917 -12.10793 -11.78478 -11.74911 -11.64492 -11.21931 -11.14655 -10.88676 -10.41893 -10.33095 -9.97008 -9.85034 -8.84120 -8.67973 -8.35861 -6.13832 -0.51554 0.00673 0.21380 0.51187 0.81129 1.03187 1.20926 1.40525 1.43176 1.54218 1.77478 1.93405 2.24819 2.96800 2.99523 3.12993 3.31364 3.69917 3.85281 3.93392 4.10310 4.16756 4.19942 4.26651 4.39073 4.43591 4.50204 4.56648 4.67339 4.71875 4.72660 4.94822 5.09390 5.12482 5.14313 5.21389 5.42009 5.42977 5.51953 5.55625 5.72614 5.80566 6.06976 6.19554 6.62763 6.64338 7.06660 8.73021 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.033197 B = 0.001715 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.249597 B =16318.765304 C =17052.641052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.080 4.080 4 C -0.121 4.121 5 C -0.103 4.103 6 C -0.045 4.045 7 C 0.109 3.891 8 C -0.284 4.284 9 S 0.177 5.823 10 C 0.271 3.729 11 N -0.608 5.608 12 C 0.539 3.461 13 O -0.512 6.512 14 C -0.125 4.125 15 S -0.134 6.134 16 C -0.548 4.548 17 H 0.087 0.913 18 C 0.016 3.984 19 N -0.910 5.910 20 Si 0.996 3.004 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.258 1.258 24 N -0.510 5.510 25 C -0.100 4.100 26 C -0.126 4.126 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.206 0.794 35 H 0.439 0.561 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.271 0.729 39 H 0.121 0.879 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.699 -29.305 -4.659 31.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.080 4.080 4 C -0.139 4.139 5 C -0.122 4.122 6 C -0.048 4.048 7 C -0.021 4.021 8 C -0.424 4.424 9 S 0.428 5.572 10 C -0.098 4.098 11 N -0.261 5.261 12 C 0.325 3.675 13 O -0.386 6.386 14 C -0.276 4.276 15 S 0.093 5.907 16 C -0.696 4.696 17 H 0.105 0.895 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.818 3.182 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.182 1.182 24 N -0.233 5.233 25 C -0.119 4.119 26 C -0.144 4.144 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.222 0.778 35 H 0.281 0.719 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.080 0.920 39 H 0.139 0.861 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.149 -27.709 -6.613 30.241 hybrid contribution -0.092 -0.251 2.550 2.564 sum -10.241 -27.961 -4.063 30.053 Atomic orbital electron populations 1.21743 0.94296 1.02417 1.01878 1.20613 0.96412 0.91213 1.03898 1.20326 0.97469 0.97309 0.92898 1.21219 0.99755 0.94176 0.98722 1.21352 0.98631 0.95226 0.96968 1.18237 1.02035 0.89600 0.94907 1.18522 1.02023 0.95390 0.86188 1.27520 1.11515 0.98975 1.04414 1.86300 1.62129 1.10499 0.98284 1.24212 1.00912 0.91125 0.93537 1.42679 1.63459 1.11033 1.08901 1.20590 0.75237 0.80718 0.90950 1.90674 1.50468 1.73927 1.23488 1.23317 1.07065 0.98357 0.98866 1.85587 1.85737 1.05941 1.13466 1.23215 1.51803 1.01432 0.93106 0.89525 1.26065 0.94182 0.97435 1.01183 1.70162 1.43606 1.13648 1.27191 0.84987 0.78999 0.76979 0.77249 1.19426 1.20496 1.18191 1.66211 1.20265 1.04639 1.32171 1.21314 0.97991 0.95014 0.97572 1.21194 1.00177 0.94229 0.98828 0.91117 0.92752 0.93204 0.90292 0.89751 0.83410 0.84042 0.77751 0.71928 0.85742 0.85713 0.91968 0.86075 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 71.98 0.71 -0.53 16 2 C -0.08 -0.76 6.06 29.85 0.18 -0.58 16 3 C -0.08 -1.13 5.14 -19.82 -0.10 -1.23 16 4 C -0.12 -1.69 9.68 22.24 0.22 -1.47 16 5 C -0.10 -1.74 9.47 22.49 0.21 -1.53 16 6 C -0.05 -1.00 5.88 -20.04 -0.12 -1.12 16 7 C 0.11 2.79 6.61 40.86 0.27 3.06 16 8 C -0.28 -6.56 10.57 66.97 0.71 -5.85 16 9 S 0.18 5.10 20.54 -56.49 -1.16 3.94 16 10 C 0.27 7.94 8.39 179.21 1.50 9.44 16 11 N -0.61 -16.39 5.40 -309.74 -1.67 -18.06 16 12 C 0.54 18.22 7.81 87.66 0.68 18.91 16 13 O -0.51 -20.97 13.38 -3.05 -0.04 -21.02 16 14 C -0.13 -4.43 6.16 71.24 0.44 -3.99 16 15 S -0.13 -6.93 20.57 -56.49 -1.16 -8.10 16 16 C -0.55 -29.66 9.50 67.95 0.65 -29.02 16 17 H 0.09 4.32 7.80 -2.91 -0.02 4.29 16 18 C 0.02 0.90 5.49 84.86 0.47 1.37 16 19 N -0.91 -54.03 13.22 21.65 0.29 -53.74 16 20 Si 1.00 42.18 29.55 68.60 2.03 44.20 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 22 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 24 N -0.51 -14.42 9.90 -186.85 -1.85 -16.27 16 25 C -0.10 -2.13 9.63 22.49 0.22 -1.91 16 26 C -0.13 -2.11 9.68 22.24 0.22 -1.89 16 27 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 31 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 32 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.14 1.79 6.59 -2.91 -0.02 1.77 16 34 H 0.21 3.25 6.81 -2.91 -0.02 3.23 16 35 H 0.44 8.79 8.82 -92.71 -0.82 7.97 16 36 H 0.12 3.85 8.14 -2.40 -0.02 3.83 16 37 H 0.12 3.85 8.14 -2.40 -0.02 3.83 16 38 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.12 2.72 7.67 -2.91 -0.02 2.70 16 40 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -71.70 372.83 2.94 -68.76 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.27 Total: 16.63 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 6.25 Total: -16.34 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -3.24 Total: -88.07 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.04 Total: -21.02 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -2.32 Total: -4.15 kcal Total: -71.70 2.94 -68.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032833263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.844 kcal (2) G-P(sol) polarization free energy of solvation -71.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds