Wall clock time and date at job start Tue Mar 31 2020 05:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99816 * 2 1 4 4 H 1.48508 * 109.46923 * 269.99834 * 3 2 1 5 5 H 1.48499 * 109.47170 * 30.00089 * 3 2 1 6 6 H 1.48496 * 109.47237 * 150.00155 * 3 2 1 7 7 C 1.38800 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99895 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00196 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00036 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.46885 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00064 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99719 * 179.97438 * 11 10 9 14 14 C 1.46936 * 120.63180 * 0.02562 * 13 11 10 15 15 C 1.53193 * 108.77307 * 233.60850 * 14 13 11 16 16 C 1.53043 * 109.31268 * 305.36556 * 15 14 13 17 17 C 1.53042 * 109.54196 * 61.36183 * 16 15 14 18 18 H 1.09000 * 109.49131 * 58.62130 * 17 16 15 19 19 C 1.50693 * 109.49836 * 178.68165 * 17 16 15 20 20 O 1.21287 * 120.00479 * 359.94071 * 19 17 16 21 21 N 1.34777 * 120.00042 * 179.97438 * 19 17 16 22 22 C 1.39929 * 120.00389 * 185.28041 * 21 19 17 23 23 C 1.38874 * 120.06438 * 33.29163 * 22 21 19 24 24 C 1.38111 * 119.92526 * 180.02562 * 23 22 21 25 25 C 1.38288 * 120.07248 * 359.97438 * 24 23 22 26 26 C 1.38279 * 120.13652 * 0.25966 * 25 24 23 27 27 C 1.38110 * 120.07409 * 359.48341 * 26 25 24 28 28 C 1.46930 * 120.60388 * 180.02562 * 13 11 10 29 29 H 0.96991 * 120.00296 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.47054 * 60.00019 * 10 9 7 31 31 H 1.08994 * 109.47134 * 299.99700 * 10 9 7 32 32 H 1.08996 * 109.58464 * 113.81809 * 14 13 11 33 33 H 1.08996 * 109.58383 * 353.39352 * 14 13 11 34 34 H 1.08991 * 109.49506 * 185.41480 * 15 14 13 35 35 H 1.09002 * 109.52570 * 65.33029 * 15 14 13 36 36 H 1.09004 * 109.45808 * 301.34599 * 16 15 14 37 37 H 1.09001 * 109.44778 * 181.38149 * 16 15 14 38 38 H 0.96999 * 119.99562 * 5.28457 * 21 19 17 39 39 H 1.08003 * 120.04096 * 359.97438 * 23 22 21 40 40 H 1.08003 * 119.96149 * 179.97438 * 24 23 22 41 41 H 1.07994 * 119.92743 * 179.97438 * 25 24 23 42 42 H 1.08007 * 119.96118 * 179.74332 * 26 25 24 43 43 H 1.08002 * 120.03796 * 180.25713 * 27 26 25 44 44 H 1.09003 * 109.61721 * 6.62612 * 28 13 11 45 45 H 1.08994 * 109.56616 * 246.19389 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0008 14 6 4.2961 -6.1172 0.0003 15 6 4.9151 -6.8917 -1.1676 16 6 4.5080 -8.3638 -1.0711 17 6 2.9851 -8.4811 -1.1669 18 1 2.6458 -8.0513 -2.1094 19 6 2.5875 -9.9333 -1.1044 20 8 3.4383 -10.7908 -0.9951 21 7 1.2866 -10.2793 -1.1705 22 6 0.9086 -11.6160 -1.0017 23 6 1.6245 -12.4381 -0.1414 24 6 1.2492 -13.7571 0.0226 25 6 0.1617 -14.2592 -0.6684 26 6 -0.5501 -13.4443 -1.5295 27 6 -0.1833 -12.1230 -1.6939 28 6 2.3436 -7.7245 0.0008 29 1 -0.4850 0.8399 0.0004 30 1 3.1246 -3.7313 0.8906 31 1 3.1245 -3.7313 -0.8894 32 1 4.7212 -6.4709 0.9395 33 1 4.5003 -5.0531 -0.1179 34 1 6.0011 -6.8108 -1.1227 35 1 4.5580 -6.4765 -2.1101 36 1 4.8443 -8.7718 -0.1180 37 1 4.9673 -8.9216 -1.8873 38 1 0.6124 -9.6017 -1.3352 39 1 2.4742 -12.0467 0.3983 40 1 1.8058 -14.3971 0.6913 41 1 -0.1295 -15.2910 -0.5387 42 1 -1.3966 -13.8405 -2.0709 43 1 -0.7422 -11.4860 -2.3634 44 1 1.2599 -7.7210 -0.1173 45 1 2.6092 -8.2090 0.9403 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032834124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:37 Heat of formation + Delta-G solvation = -47.276660 kcal Electronic energy + Delta-G solvation = -27254.502506 eV Core-core repulsion = 23362.806770 eV Total energy + Delta-G solvation = -3891.695735 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.14705 -39.87431 -38.74003 -37.01331 -35.12777 -33.16075 -32.46652 -31.87823 -31.19557 -29.83557 -29.02456 -25.62538 -25.31706 -24.50858 -23.22854 -22.69705 -21.40859 -20.28844 -19.19226 -18.21988 -17.76338 -17.23316 -16.77800 -16.49090 -16.15544 -15.44936 -15.31736 -14.84163 -14.83436 -14.77215 -14.21747 -14.14522 -14.08068 -13.92180 -13.62468 -13.34630 -13.10894 -13.05002 -12.82542 -12.55771 -12.06809 -11.98335 -11.73127 -11.54826 -11.22967 -11.19552 -11.09442 -11.05718 -10.91166 -10.78608 -10.70912 -10.15182 -9.84255 -9.46353 -9.21193 -9.10286 -8.67270 -8.43377 -8.27864 -6.54877 -6.25411 -3.96469 0.95800 1.12223 2.21260 2.62905 2.86648 2.94014 3.19691 3.22616 3.27550 3.52015 3.54797 4.16087 4.22589 4.31086 4.52389 4.61703 4.67151 4.74989 4.84100 4.87815 4.89608 4.96365 5.09946 5.12047 5.22795 5.25819 5.28250 5.32242 5.51621 5.52720 5.56742 5.63700 5.71797 5.75400 5.80450 5.84744 6.00054 6.02906 6.05531 6.06627 6.20512 6.26588 6.45812 6.73303 7.00508 7.42044 7.56007 7.73664 8.31373 8.43235 9.20030 10.81983 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.021261 B = 0.002010 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.665766 B =13928.643642 C =14946.173076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.151 4.151 11 C 0.537 3.463 12 O -0.516 6.516 13 N -0.618 5.618 14 C 0.105 3.895 15 C -0.136 4.136 16 C -0.098 4.098 17 C -0.123 4.123 18 H 0.107 0.893 19 C 0.525 3.475 20 O -0.517 6.517 21 N -0.675 5.675 22 C 0.149 3.851 23 C -0.122 4.122 24 C -0.102 4.102 25 C -0.139 4.139 26 C -0.101 4.101 27 C -0.146 4.146 28 C 0.125 3.875 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.415 0.585 39 H 0.134 0.866 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.279 -24.700 -2.427 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.301 4.301 11 C 0.325 3.675 12 O -0.390 6.390 13 N -0.355 5.355 14 C -0.018 4.018 15 C -0.174 4.174 16 C -0.136 4.136 17 C -0.145 4.145 18 H 0.125 0.875 19 C 0.312 3.688 20 O -0.391 6.391 21 N -0.320 5.320 22 C 0.055 3.945 23 C -0.142 4.142 24 C -0.120 4.120 25 C -0.157 4.157 26 C -0.120 4.120 27 C -0.167 4.167 28 C 0.001 3.999 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.252 0.748 39 H 0.151 0.849 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.116 0.884 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.981 -25.407 -2.325 25.995 hybrid contribution 1.643 1.607 -0.184 2.306 sum 6.625 -23.801 -2.509 24.833 Atomic orbital electron populations 1.70010 1.05951 1.27502 1.46774 1.24994 0.95036 0.99047 0.94501 0.86167 0.79422 0.81547 0.78361 1.20264 1.20738 1.19676 1.22850 0.94886 0.91572 1.59060 0.90907 1.85397 1.04901 0.96398 1.96717 1.23559 1.06579 0.95144 1.04841 1.20388 0.86147 0.86215 0.74740 1.90689 1.15155 1.85204 1.47971 1.48069 1.06722 1.05042 1.75646 1.21799 0.79627 1.01834 0.98568 1.21964 1.01148 0.94967 0.99340 1.21341 0.91972 0.96525 1.03727 1.21796 0.99231 0.91134 1.02316 0.87547 1.20730 0.81610 0.91370 0.75056 1.90714 1.49693 1.51619 1.47067 1.43692 1.09012 1.07833 1.71485 1.17786 0.96129 0.84440 0.96147 1.21161 1.00890 0.94189 0.97952 1.21058 0.96689 0.94998 0.99278 1.21146 0.96410 1.00023 0.98152 1.20955 0.99624 0.93076 0.98297 1.20945 0.98691 0.96360 1.00683 1.21364 1.00320 0.81882 0.96358 0.92155 0.89143 0.89121 0.91228 0.88838 0.90018 0.91035 0.90850 0.90761 0.74834 0.84851 0.85761 0.86018 0.85667 0.85576 0.88443 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.72 13.22 55.49 0.73 -24.98 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.91 4.50 36.01 0.16 -2.75 16 11 C 0.54 9.54 7.72 -10.98 -0.08 9.45 16 12 O -0.52 -10.99 15.27 5.56 0.08 -10.91 16 13 N -0.62 -8.01 2.97 -172.74 -0.51 -8.53 16 14 C 0.10 1.04 6.34 -3.70 -0.02 1.02 16 15 C -0.14 -1.12 6.08 -26.61 -0.16 -1.28 16 16 C -0.10 -0.86 4.46 -26.69 -0.12 -0.98 16 17 C -0.12 -1.15 2.67 -91.64 -0.24 -1.39 16 18 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 19 C 0.53 5.48 6.89 -10.99 -0.08 5.40 16 20 O -0.52 -6.78 13.67 5.55 0.08 -6.70 16 21 N -0.67 -6.21 5.23 -9.86 -0.05 -6.26 16 22 C 0.15 1.50 6.28 -83.69 -0.53 0.98 16 23 C -0.12 -1.28 8.66 -39.39 -0.34 -1.62 16 24 C -0.10 -0.89 10.04 -39.61 -0.40 -1.29 16 25 C -0.14 -1.08 10.04 -39.55 -0.40 -1.48 16 26 C -0.10 -0.78 10.04 -39.61 -0.40 -1.18 16 27 C -0.15 -1.26 9.96 -39.40 -0.39 -1.65 16 28 C 0.12 1.37 5.59 -3.69 -0.02 1.35 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.09 1.62 7.94 -51.91 -0.41 1.21 16 31 H 0.09 1.61 7.69 -51.92 -0.40 1.21 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.95 5.93 -51.93 -0.31 0.64 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 37 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 38 H 0.41 3.03 8.54 -40.82 -0.35 2.69 16 39 H 0.13 1.53 6.42 -52.48 -0.34 1.19 16 40 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 42 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 43 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.10 1.15 6.75 -51.93 -0.35 0.80 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -35.06 384.61 -10.28 -45.34 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.35 Total: 2.13 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -2.82 Total: -8.07 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.17 Total: -39.77 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.16 Total: -17.61 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.06 -10.28 -45.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032834124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.939 kcal (2) G-P(sol) polarization free energy of solvation -35.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds