Wall clock time and date at job start Tue Mar 31 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86808 * 119.99507 * 2 1 4 4 H 1.48491 * 109.46990 * 269.99853 * 3 2 1 5 5 H 1.48500 * 109.47235 * 30.00164 * 3 2 1 6 6 H 1.48502 * 109.46590 * 150.00061 * 3 2 1 7 7 C 1.38793 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99839 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99901 * 179.72641 * 7 2 1 10 10 C 1.81008 * 99.99867 * 180.27741 * 9 7 2 11 11 C 1.50699 * 109.47059 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99861 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99814 * 179.97438 * 11 10 9 14 14 C 1.46929 * 120.63370 * 359.72477 * 13 11 10 15 15 C 1.53617 * 108.54463 * 126.36699 * 14 13 11 16 16 C 1.53036 * 109.24476 * 54.85541 * 15 14 13 17 17 C 1.53039 * 109.53987 * 298.51513 * 16 15 14 18 18 H 1.09003 * 109.49438 * 301.41315 * 17 16 15 19 19 C 1.50696 * 109.52796 * 181.33356 * 17 16 15 20 20 O 1.21289 * 119.99729 * 0.13843 * 19 17 16 21 21 N 1.34772 * 120.00508 * 180.14656 * 19 17 16 22 22 C 1.39923 * 120.00604 * 175.36296 * 21 19 17 23 23 C 1.38868 * 120.07312 * 214.81282 * 22 21 19 24 24 C 1.38121 * 119.92724 * 179.72150 * 23 22 21 25 25 C 1.38282 * 120.06841 * 0.52802 * 24 23 22 26 26 C 1.38282 * 120.14250 * 359.77291 * 25 24 23 27 27 C 1.38108 * 120.07037 * 359.94810 * 26 25 24 28 28 C 1.46932 * 120.62905 * 180.02562 * 13 11 10 29 29 H 0.96997 * 120.00387 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46532 * 299.99789 * 10 9 7 31 31 H 1.08999 * 109.46981 * 59.99942 * 10 9 7 32 32 H 1.09000 * 109.58707 * 246.20502 * 14 13 11 33 33 H 1.09001 * 109.58230 * 6.62481 * 14 13 11 34 34 H 1.09000 * 109.63373 * 294.86752 * 15 14 13 35 35 H 1.08995 * 109.43405 * 174.72904 * 15 14 13 36 36 H 1.08999 * 109.46428 * 178.49117 * 16 15 14 37 37 H 1.09000 * 109.46018 * 58.53063 * 16 15 14 38 38 H 0.97008 * 119.99873 * 355.35972 * 21 19 17 39 39 H 1.07993 * 120.03698 * 359.97292 * 23 22 21 40 40 H 1.08000 * 119.96361 * 180.29573 * 24 23 22 41 41 H 1.08003 * 119.92748 * 179.74173 * 25 24 23 42 42 H 1.08003 * 119.96268 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.03452 * 180.02562 * 27 26 25 44 44 H 1.08994 * 109.58643 * 353.37241 * 28 13 11 45 45 H 1.08991 * 109.58877 * 113.79927 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6179 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6528 0.7001 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2018 -0.0067 10 6 4.0868 -2.9844 -0.0116 11 6 5.5732 -3.2323 -0.0189 12 8 6.3441 -2.2960 -0.0202 13 7 6.0459 -4.4944 -0.0230 14 6 5.1245 -5.6389 -0.0143 15 6 5.4801 -6.5612 -1.1902 16 6 6.9590 -6.9447 -1.1012 17 6 7.8214 -5.6844 -1.2002 18 1 7.6139 -5.1745 -2.1410 19 6 9.2784 -6.0654 -1.1454 20 8 9.5968 -7.2310 -1.0402 21 7 10.2276 -5.1111 -1.2131 22 6 11.5761 -5.4537 -1.0649 23 6 12.4505 -4.5804 -0.4314 24 6 13.7798 -4.9241 -0.2817 25 6 14.2426 -6.1317 -0.7715 26 6 13.3758 -7.0008 -1.4082 27 6 12.0442 -6.6655 -1.5560 28 6 7.4924 -4.7520 -0.0295 29 1 -0.4850 0.8400 0.0004 30 1 3.6476 -3.4331 0.8793 31 1 3.6402 -3.4296 -0.9007 32 1 5.2267 -6.1832 0.9245 33 1 4.0998 -5.2838 -0.1235 34 1 5.2947 -6.0432 -2.1311 35 1 4.8674 -7.4614 -1.1432 36 1 7.2087 -7.6208 -1.9189 37 1 7.1488 -7.4407 -0.1493 38 1 9.9760 -4.1866 -1.3645 39 1 12.0906 -3.6352 -0.0527 40 1 14.4593 -4.2474 0.2151 41 1 15.2834 -6.3963 -0.6568 42 1 13.7404 -7.9430 -1.7900 43 1 11.3676 -7.3449 -2.0531 44 1 8.0305 -3.8117 -0.1488 45 1 7.7835 -5.2256 0.9080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032834127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:40 Heat of formation + Delta-G solvation = -46.409706 kcal Electronic energy + Delta-G solvation = -27309.043811 eV Core-core repulsion = 23417.385670 eV Total energy + Delta-G solvation = -3891.658141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18793 -39.95455 -38.78596 -37.08813 -35.16369 -33.24681 -32.47531 -31.91528 -31.21208 -29.90711 -29.12308 -25.71555 -25.39241 -24.60141 -23.23300 -22.73579 -21.46054 -20.37845 -19.28088 -18.26073 -17.76552 -17.25761 -16.89947 -16.51232 -16.22604 -15.53550 -15.31274 -15.03512 -14.95631 -14.74340 -14.35310 -14.19754 -14.03001 -13.85174 -13.61749 -13.43193 -13.21931 -13.11410 -12.82880 -12.78936 -12.14986 -12.05424 -11.82768 -11.58234 -11.35887 -11.25667 -11.20125 -11.04489 -10.96487 -10.71068 -10.63194 -10.14323 -9.89638 -9.57853 -9.23261 -9.04277 -8.75807 -8.54610 -8.49301 -6.97045 -6.32572 -4.05011 0.93573 1.10015 2.14226 2.57000 2.68971 2.81337 3.11077 3.29715 3.46664 3.50813 3.53466 4.19085 4.24448 4.29492 4.48189 4.58959 4.59641 4.65448 4.70404 4.83448 4.85716 4.91525 5.00851 5.06421 5.09896 5.18763 5.23496 5.26476 5.34104 5.46820 5.51362 5.58672 5.68009 5.68936 5.71445 5.79745 5.92830 5.97972 6.01047 6.03207 6.17847 6.24268 6.36824 6.71351 6.96723 7.31655 7.70167 7.90280 8.29938 8.37684 9.13420 10.76534 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.018418 B = 0.002149 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.919274 B =13025.288867 C =14345.907050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.122 4.122 11 C 0.536 3.464 12 O -0.519 6.519 13 N -0.617 5.617 14 C 0.103 3.897 15 C -0.136 4.136 16 C -0.098 4.098 17 C -0.122 4.122 18 H 0.107 0.893 19 C 0.525 3.475 20 O -0.517 6.517 21 N -0.675 5.675 22 C 0.145 3.855 23 C -0.144 4.144 24 C -0.102 4.102 25 C -0.137 4.137 26 C -0.104 4.104 27 C -0.122 4.122 28 C 0.125 3.875 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.415 0.585 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.138 0.862 44 H 0.097 0.903 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.987 -15.692 -2.711 27.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.272 4.272 11 C 0.324 3.676 12 O -0.393 6.393 13 N -0.353 5.353 14 C -0.020 4.020 15 C -0.174 4.174 16 C -0.136 4.136 17 C -0.144 4.144 18 H 0.125 0.875 19 C 0.312 3.688 20 O -0.391 6.391 21 N -0.320 5.320 22 C 0.051 3.949 23 C -0.165 4.165 24 C -0.121 4.121 25 C -0.156 4.156 26 C -0.123 4.123 27 C -0.142 4.142 28 C 0.001 3.999 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.251 0.749 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.156 0.844 44 H 0.115 0.885 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.083 -15.022 -2.619 28.504 hybrid contribution -0.961 0.126 -0.105 0.975 sum 23.121 -14.896 -2.723 27.639 Atomic orbital electron populations 1.69936 1.05895 1.27800 1.47931 1.24715 0.94457 0.98966 0.93170 0.86736 0.81886 0.83310 0.79922 1.19214 1.19922 1.15949 1.22294 0.88150 0.97542 1.58917 0.89358 1.84791 1.09444 0.99965 1.97420 1.23313 0.93817 1.04356 1.05725 1.20349 0.90792 0.81627 0.74859 1.90684 1.58736 1.41655 1.48238 1.48036 1.05833 1.06046 1.75366 1.21929 0.94294 0.87070 0.98686 1.22033 0.96120 1.00035 0.99197 1.21345 0.93442 0.95018 1.03803 1.21795 0.90685 0.99738 1.02207 0.87501 1.20722 0.87666 0.85384 0.75000 1.90699 1.82774 1.18450 1.47192 1.43650 1.04427 1.12271 1.71630 1.17804 0.83235 0.95853 0.98033 1.20983 0.94022 1.00617 1.00856 1.20965 0.94921 0.96832 0.99351 1.21161 0.99863 0.94664 0.99906 1.21081 0.92970 0.99481 0.98729 1.21306 0.95920 0.96772 1.00206 1.21382 0.82530 0.99487 0.96516 0.91910 0.88374 0.88401 0.91029 0.88730 0.90976 0.89925 0.90706 0.90810 0.74883 0.85494 0.85640 0.86029 0.85787 0.84406 0.88484 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.08 13.97 55.49 0.78 -25.31 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 21.37 27.74 -169.99 -4.71 16.66 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 7 C -0.52 -14.66 10.04 30.94 0.31 -14.34 16 8 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 9 S -0.14 -3.50 18.55 -107.50 -1.99 -5.50 16 10 C -0.12 -2.24 4.50 36.01 0.16 -2.08 16 11 C 0.54 8.99 7.72 -10.99 -0.08 8.90 16 12 O -0.52 -10.39 15.28 5.56 0.08 -10.31 16 13 N -0.62 -7.57 2.97 -172.48 -0.51 -8.08 16 14 C 0.10 0.98 6.37 -3.49 -0.02 0.96 16 15 C -0.14 -1.07 6.10 -26.39 -0.16 -1.23 16 16 C -0.10 -0.83 4.46 -26.69 -0.12 -0.95 16 17 C -0.12 -1.08 2.67 -91.63 -0.24 -1.33 16 18 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 19 C 0.52 5.25 7.00 -10.99 -0.08 5.17 16 20 O -0.52 -6.56 13.42 5.55 0.07 -6.48 16 21 N -0.67 -5.90 5.22 -9.86 -0.05 -5.95 16 22 C 0.14 1.41 6.30 -83.69 -0.53 0.88 16 23 C -0.14 -1.22 9.97 -39.39 -0.39 -1.61 16 24 C -0.10 -0.78 10.04 -39.61 -0.40 -1.17 16 25 C -0.14 -1.04 10.04 -39.55 -0.40 -1.44 16 26 C -0.10 -0.88 10.04 -39.61 -0.40 -1.28 16 27 C -0.12 -1.24 8.70 -39.39 -0.34 -1.58 16 28 C 0.12 1.29 5.58 -3.69 -0.02 1.27 16 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.10 1.69 7.93 -51.92 -0.41 1.28 16 31 H 0.10 1.67 7.70 -51.92 -0.40 1.27 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.92 5.93 -51.93 -0.31 0.61 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 37 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 38 H 0.41 2.82 8.51 -40.82 -0.35 2.47 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.14 1.54 6.23 -52.49 -0.33 1.21 16 44 H 0.10 1.07 6.72 -51.93 -0.35 0.72 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -34.61 381.63 -9.76 -44.37 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.37 Total: 2.02 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.81 Total: -7.18 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.21 Total: -39.34 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.16 Total: -16.79 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.66 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.61 -9.76 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032834127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.039 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds