Wall clock time and date at job start Tue Mar 31 2020 05:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 119.99760 * 2 1 4 4 O 1.21541 * 119.99726 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00103 * 179.97438 * 3 2 1 6 6 C 1.34776 * 119.99773 * 179.97438 * 5 3 2 7 7 O 1.21233 * 120.00558 * 0.02562 * 6 5 3 8 8 C 1.50705 * 119.99816 * 180.02562 * 6 5 3 9 9 S 1.80995 * 109.47085 * 180.02562 * 8 6 5 10 10 C 1.76205 * 99.99855 * 179.97438 * 9 8 6 11 11 N 1.31043 * 125.07930 * 0.02562 * 10 9 8 12 12 C 1.35869 * 109.62253 * 179.97438 * 11 10 9 13 13 C 1.39735 * 133.37668 * 180.02562 * 12 11 10 14 14 C 1.37677 * 119.77712 * 179.97438 * 13 12 11 15 15 C 1.38709 * 120.49748 * 359.97438 * 14 13 12 16 16 C 1.37968 * 120.43335 * 0.04811 * 15 14 13 17 17 C 1.38656 * 119.85610 * 359.66258 * 16 15 14 18 18 N 1.36637 * 125.07335 * 179.97438 * 10 9 8 19 19 C 1.46491 * 126.38963 * 0.02562 * 18 10 9 20 20 C 1.50702 * 109.46957 * 90.02307 * 19 18 10 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99985 * 180.27663 * 22 20 19 24 24 Si 1.86800 * 119.99777 * 0.28166 * 22 20 19 25 25 H 1.48498 * 109.47109 * 89.99834 * 24 22 20 26 26 H 1.48507 * 109.46754 * 209.99574 * 24 22 20 27 27 H 1.48498 * 109.47278 * 329.99405 * 24 22 20 28 28 H 1.08997 * 109.47576 * 300.00293 * 1 2 3 29 29 H 1.09008 * 109.47096 * 60.00668 * 1 2 3 30 30 H 1.08997 * 109.46860 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00583 * 179.97438 * 2 1 3 32 32 H 0.97002 * 120.00084 * 0.02562 * 5 3 2 33 33 H 1.08997 * 109.47430 * 59.99552 * 8 6 5 34 34 H 1.09004 * 109.46450 * 300.00032 * 8 6 5 35 35 H 1.07996 * 120.10714 * 359.95119 * 13 12 11 36 36 H 1.08001 * 119.75119 * 180.02562 * 14 13 12 37 37 H 1.08000 * 119.78015 * 180.02562 * 15 14 13 38 38 H 1.08002 * 120.07127 * 179.97438 * 16 15 14 39 39 H 1.09004 * 109.47166 * 330.02573 * 19 18 10 40 40 H 1.08994 * 109.47507 * 210.02280 * 19 18 10 41 41 H 0.96996 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5310 2.2198 0.0005 5 7 3.4866 1.1674 0.0005 6 6 4.1603 2.3346 0.0000 7 8 3.5542 3.3845 -0.0005 8 6 5.6674 2.3347 0.0000 9 16 6.2706 4.0412 0.0000 10 6 8.0086 3.7513 0.0008 11 7 8.5751 2.5697 0.0007 12 6 9.9263 2.7114 0.0008 13 6 10.9868 1.8014 0.0004 14 6 12.2838 2.2630 0.0002 15 6 12.5464 3.6250 -0.0001 16 6 11.5105 4.5363 0.0008 17 6 10.1980 4.0895 -0.0051 18 7 8.9670 4.7252 0.0005 19 6 8.7361 6.1718 0.0001 20 6 8.6575 6.6683 1.4208 21 1 8.7688 5.9756 2.2419 22 6 8.4496 8.0080 1.6724 23 7 8.3864 8.4421 2.9122 24 14 8.2577 9.2062 0.2523 25 1 6.8235 9.3080 -0.1190 26 1 8.7593 10.5428 0.6612 27 1 9.0377 8.7203 -0.9142 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9500 -0.8399 0.0004 32 1 3.9716 0.3273 0.0005 33 1 6.0308 1.8205 -0.8897 34 1 6.0306 1.8213 0.8903 35 1 10.7894 0.7396 0.0006 36 1 13.1031 1.5592 -0.0006 37 1 13.5683 3.9743 -0.0007 38 1 11.7217 5.5955 0.0009 39 1 7.7998 6.3902 -0.5134 40 1 9.5575 6.6707 -0.5141 41 1 8.2398 9.3845 3.0892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032957484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:28 Heat of formation + Delta-G solvation = 21.925782 kcal Electronic energy + Delta-G solvation = -26836.704019 eV Core-core repulsion = 22844.468784 eV Total energy + Delta-G solvation = -3992.235236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.42792 -41.33226 -38.62982 -36.82568 -34.99354 -34.69505 -34.24892 -32.40382 -30.51300 -30.06056 -28.92846 -27.77939 -27.21282 -23.34154 -23.08864 -22.52877 -21.56299 -20.82806 -20.08481 -19.43419 -17.67746 -17.23599 -16.96956 -16.65558 -16.54388 -16.08685 -15.61974 -15.20399 -15.07372 -14.85354 -14.56725 -14.22797 -14.11768 -13.60640 -13.55781 -13.48756 -13.16654 -12.70381 -12.66109 -12.63496 -12.27359 -11.78671 -11.64486 -11.36119 -11.20735 -11.00058 -10.82818 -10.53757 -10.37295 -10.36635 -9.95142 -9.87162 -9.61493 -9.55914 -9.45538 -8.82908 -8.67967 -7.60090 -7.09644 -6.30910 -4.36216 1.16261 1.31068 1.84260 1.96927 2.06853 2.25605 3.01306 3.09474 3.14054 3.18801 3.22455 3.50536 3.57681 4.18244 4.26591 4.27553 4.76031 4.82204 4.89016 4.96589 5.14691 5.21432 5.28702 5.37284 5.39610 5.68455 5.75425 5.77796 5.84886 5.91419 6.01553 6.09828 6.23449 6.32060 6.61107 6.85330 6.92345 7.05721 7.12375 7.18382 7.23343 7.52909 7.75497 8.07882 8.13131 8.22225 8.71896 9.23405 10.81168 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.009463 B = 0.003189 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.164535 B = 8777.398730 C =11348.107700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.743 5.743 3 C 0.692 3.308 4 O -0.526 6.526 5 N -0.687 5.687 6 C 0.537 3.463 7 O -0.445 6.445 8 C -0.155 4.155 9 S 0.097 5.903 10 C 0.249 3.751 11 N -0.519 5.519 12 C 0.052 3.948 13 C -0.078 4.078 14 C -0.133 4.133 15 C -0.119 4.119 16 C -0.091 4.091 17 C 0.063 3.937 18 N -0.435 5.435 19 C 0.208 3.792 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.085 3.915 23 N -0.880 5.880 24 Si 0.868 3.132 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.265 1.265 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.400 0.600 32 H 0.412 0.588 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 -20.377 -7.974 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.400 5.400 3 C 0.392 3.608 4 O -0.397 6.397 5 N -0.354 5.354 6 C 0.321 3.679 7 O -0.312 6.312 8 C -0.307 4.307 9 S 0.327 5.673 10 C -0.125 4.125 11 N -0.245 5.245 12 C -0.070 4.070 13 C -0.098 4.098 14 C -0.153 4.153 15 C -0.140 4.140 16 C -0.112 4.112 17 C -0.050 4.050 18 N -0.121 5.121 19 C 0.088 3.912 20 C -0.584 4.584 21 H 0.101 0.899 22 C -0.121 4.121 23 N -0.516 5.516 24 Si 0.693 3.307 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.189 1.189 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.234 0.766 32 H 0.247 0.753 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.015 -18.062 -7.846 20.904 hybrid contribution 1.618 -0.590 -0.449 1.780 sum -5.396 -18.652 -8.295 21.114 Atomic orbital electron populations 1.21491 0.77400 1.02390 1.02806 1.45024 1.08199 1.06840 1.79983 1.16126 0.81185 0.84987 0.78503 1.91105 1.66830 1.29736 1.51980 1.43990 1.06885 1.11387 1.73140 1.19939 0.88707 0.83155 0.76135 1.90914 1.69269 1.29938 1.41078 1.23632 0.93709 1.03469 1.09879 1.86751 0.86099 1.01942 1.92526 1.25433 0.97751 0.86384 1.02900 1.70838 1.05780 1.21015 1.26906 1.19016 0.90898 0.91528 1.05547 1.20062 0.90097 0.97949 1.01720 1.20744 0.95685 0.95474 1.03432 1.20760 0.98014 0.92761 1.02455 1.20058 0.88852 1.00245 1.02060 1.18964 0.87568 0.92662 1.05835 1.45527 1.02825 1.08281 1.55504 1.20202 0.98269 0.72289 1.00396 1.21050 1.52811 0.94753 0.89802 0.89949 1.24771 0.93817 0.97709 0.95757 1.69857 1.47270 1.15839 1.18632 0.86975 0.79706 0.81299 0.82695 1.19151 1.20347 1.18937 0.91931 0.91984 0.90222 0.76627 0.75254 0.85266 0.85052 0.86113 0.86028 0.85835 0.85817 0.93610 0.93359 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 10.70 59.84 0.64 1.23 16 2 N -0.74 -4.85 5.72 -72.08 -0.41 -5.26 16 3 C 0.69 7.97 8.50 -86.91 -0.74 7.23 16 4 O -0.53 -9.16 14.74 -18.47 -0.27 -9.43 16 5 N -0.69 -6.36 5.24 -15.78 -0.08 -6.45 16 6 C 0.54 7.23 7.79 -10.98 -0.09 7.14 16 7 O -0.45 -8.42 14.26 -18.21 -0.26 -8.68 16 8 C -0.16 -1.93 5.64 36.01 0.20 -1.73 16 9 S 0.10 1.76 20.68 -107.50 -2.22 -0.46 16 10 C 0.25 5.05 7.93 -88.45 -0.70 4.35 16 11 N -0.52 -9.93 10.57 -10.90 -0.12 -10.05 16 12 C 0.05 1.00 7.22 -84.68 -0.61 0.39 16 13 C -0.08 -1.21 10.10 -39.23 -0.40 -1.61 16 14 C -0.13 -1.82 10.01 -39.61 -0.40 -2.22 16 15 C -0.12 -1.76 10.03 -39.51 -0.40 -2.15 16 16 C -0.09 -1.65 10.04 -39.53 -0.40 -2.05 16 17 C 0.06 1.29 6.87 -83.84 -0.58 0.72 16 18 N -0.43 -9.62 2.82 -115.61 -0.33 -9.95 16 19 C 0.21 4.89 4.76 -5.20 -0.02 4.87 16 20 C -0.55 -15.02 9.94 -34.44 -0.34 -15.37 16 21 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 22 C 0.08 2.35 5.47 -17.82 -0.10 2.26 16 23 N -0.88 -26.04 13.96 55.43 0.77 -25.26 16 24 Si 0.87 20.25 27.47 -169.99 -4.67 15.58 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.40 1.02 8.84 -40.82 -0.36 0.65 16 32 H 0.41 1.68 8.71 -40.82 -0.36 1.33 16 33 H 0.13 1.31 8.14 -51.92 -0.42 0.88 16 34 H 0.13 1.45 8.14 -51.91 -0.42 1.02 16 35 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.05 1.05 7.11 -51.93 -0.37 0.69 16 40 H 0.05 1.10 7.19 -51.93 -0.37 0.73 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 372.38 15.07 5.61 5.61 Total: -1.00 -38.69 372.38 -10.75 -49.44 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.85 Total: 1.84 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -3.92 Total: 3.07 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.16 Total: -56.97 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.53 Total: -18.11 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.22 Total: -0.46 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -38.69 -10.75 -49.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032957484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.368 kcal (2) G-P(sol) polarization free energy of solvation -38.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds