Wall clock time and date at job start Tue Mar 31 2020 05:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38385 * 119.84173 * 2 1 4 4 C 1.37930 * 120.15118 * 179.72541 * 3 2 1 5 5 C 1.39683 * 119.84162 * 0.25228 * 4 3 2 6 6 C 1.47631 * 120.15128 * 180.02562 * 5 4 3 7 7 C 1.35020 * 124.36191 * 180.02562 * 6 5 4 8 8 C 1.47250 * 106.47203 * 179.97438 * 7 6 5 9 9 C 1.38232 * 127.84057 * 180.02562 * 8 7 6 10 10 C 1.46277 * 120.00002 * 352.47938 * 9 8 7 11 11 C 1.40364 * 120.12356 * 334.38670 * 10 9 8 12 12 C 1.36517 * 119.86432 * 179.74238 * 11 10 9 13 13 C 1.39290 * 120.13307 * 0.53930 * 12 11 10 14 14 O 1.35500 * 119.87174 * 179.76113 * 13 12 11 15 15 C 1.34747 * 116.99888 * 185.69968 * 14 13 12 16 16 H 1.08005 * 120.00305 * 354.93141 * 15 14 13 17 17 C 1.38740 * 120.00124 * 174.93157 * 15 14 13 18 18 N 1.31499 * 119.99965 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99997 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47129 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47169 * 119.99961 * 19 17 15 22 22 H 1.48504 * 109.46682 * 239.99956 * 19 17 15 23 23 C 1.39279 * 120.25295 * 359.73553 * 13 12 11 24 24 C 1.36518 * 120.13465 * 359.97438 * 23 13 12 25 25 C 1.47513 * 104.32254 * 0.02562 * 8 7 6 26 26 O 1.21681 * 126.71531 * 180.02562 * 25 8 7 27 27 O 1.34519 * 106.57346 * 359.77562 * 25 8 7 28 28 C 1.39685 * 119.69449 * 0.02562 * 5 4 3 29 29 C 1.37930 * 119.84270 * 359.97438 * 28 5 4 30 30 H 1.09004 * 109.46965 * 89.99672 * 1 2 3 31 31 H 1.08996 * 109.47419 * 210.00026 * 1 2 3 32 32 H 1.09005 * 109.47110 * 329.99739 * 1 2 3 33 33 H 1.07995 * 119.92139 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.07574 * 180.27881 * 4 3 2 35 35 H 1.08004 * 126.76613 * 359.96268 * 7 6 5 36 36 H 1.07994 * 119.99961 * 172.46856 * 9 8 7 37 37 H 1.07997 * 120.06296 * 0.02562 * 11 10 9 38 38 H 1.08011 * 119.93352 * 180.27126 * 12 11 10 39 39 H 0.96987 * 119.99767 * 179.97438 * 18 17 15 40 40 H 1.08002 * 119.93756 * 180.02562 * 23 13 12 41 41 H 1.08003 * 120.07352 * 180.02562 * 24 23 13 42 42 H 1.08000 * 120.08028 * 180.02562 * 28 5 4 43 43 H 1.07996 * 119.92718 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.2004 0.0000 4 6 3.5749 1.2078 0.0057 5 6 4.2765 0.0000 0.0062 6 6 5.7528 0.0000 0.0129 7 6 6.5149 -1.1146 0.0133 8 6 7.9162 -0.6623 0.0202 9 6 9.0586 -1.4406 0.0226 10 6 8.9551 -2.8908 0.1838 11 6 7.8526 -3.4487 0.8496 12 6 7.7588 -4.8031 0.9925 13 6 8.7600 -5.6304 0.4890 14 8 8.6639 -6.9737 0.6380 15 6 9.7177 -7.7107 0.2356 16 1 10.5524 -7.2352 -0.2580 17 6 9.7306 -9.0806 0.4552 18 7 8.7146 -9.6596 1.0566 19 14 11.1918 -10.1022 -0.1020 20 1 12.1961 -9.2189 -0.7473 21 1 11.8039 -10.7727 1.0731 22 1 10.7366 -11.1272 -1.0754 23 6 9.8592 -5.0820 -0.1675 24 6 9.9608 -3.7294 -0.3215 25 6 7.8244 0.8100 0.0241 26 8 8.7527 1.5967 0.0296 27 8 6.5138 1.1128 0.0146 28 6 3.5749 -1.2079 0.0003 29 6 2.1956 -1.2004 -0.0054 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6518 2.1334 0.0004 34 1 4.1111 2.1453 0.0103 35 1 6.1656 -2.1366 0.0095 36 1 10.0273 -0.9781 -0.0948 37 1 7.0778 -2.8080 1.2440 38 1 6.9087 -5.2339 1.5008 39 1 8.7234 -10.6173 1.2098 40 1 10.6323 -5.7282 -0.5563 41 1 10.8134 -3.3053 -0.8311 42 1 4.1111 -2.1454 0.0010 43 1 1.6518 -2.1334 -0.0095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033888516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:56 Heat of formation + Delta-G solvation = -5.750168 kcal Electronic energy + Delta-G solvation = -27781.728020 eV Core-core repulsion = 23724.096306 eV Total energy + Delta-G solvation = -4057.631714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.119 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.97792 -39.47087 -39.36813 -37.50994 -37.23012 -34.13578 -33.46143 -32.66658 -31.26998 -30.84828 -30.23168 -28.62289 -26.74699 -25.73372 -24.60427 -22.99766 -22.53029 -21.81147 -21.50631 -20.46252 -19.34865 -18.41253 -17.53909 -17.07908 -16.46989 -16.32984 -15.61247 -15.55154 -15.21214 -14.95086 -14.64898 -14.23704 -14.08776 -14.05732 -14.02208 -13.73793 -13.62470 -13.23518 -12.94962 -12.90845 -12.68379 -12.46813 -12.30446 -12.09226 -12.04513 -11.76934 -11.55201 -11.35747 -11.27553 -11.13617 -10.87006 -10.67074 -10.43008 -10.06602 -9.71060 -9.39072 -9.15541 -9.11233 -8.63048 -8.02833 -7.04962 -6.88393 -4.38210 0.06559 0.96190 1.22271 2.02686 2.07117 2.53640 2.84477 2.90620 2.92287 2.98823 3.21266 3.64872 3.67839 4.15509 4.29823 4.45305 4.62816 4.67072 4.71881 4.80037 4.86700 5.04855 5.10492 5.19590 5.21934 5.31923 5.33546 5.35196 5.45218 5.52379 5.54546 5.77198 5.83859 5.85193 5.88842 6.00016 6.13099 6.23689 6.25812 6.34751 6.37472 6.46955 6.60221 6.71842 6.75076 6.94541 7.02427 7.06991 7.22315 7.44293 7.57440 7.59612 8.55348 9.20428 10.26874 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.002255 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.758835 B =12414.995632 C =14624.472717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.120 4.120 4 C -0.097 4.097 5 C -0.025 4.025 6 C 0.052 3.948 7 C -0.157 4.157 8 C -0.289 4.289 9 C 0.113 3.887 10 C -0.218 4.218 11 C -0.036 4.036 12 C -0.201 4.201 13 C 0.171 3.829 14 O -0.148 6.148 15 C -0.389 4.389 16 H 0.102 0.898 17 C 0.042 3.958 18 N -0.840 5.840 19 Si 0.948 3.052 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.243 4.243 24 C -0.021 4.021 25 C 0.512 3.488 26 O -0.466 6.466 27 O -0.270 6.270 28 C -0.094 4.094 29 C -0.116 4.116 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.167 0.833 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.278 0.722 40 H 0.133 0.867 41 H 0.117 0.883 42 H 0.132 0.868 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 12.955 -2.248 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.138 4.138 4 C -0.115 4.115 5 C -0.025 4.025 6 C 0.009 3.991 7 C -0.175 4.175 8 C -0.291 4.291 9 C 0.095 3.905 10 C -0.220 4.220 11 C -0.054 4.054 12 C -0.220 4.220 13 C 0.112 3.888 14 O -0.047 6.047 15 C -0.464 4.464 16 H 0.120 0.880 17 C -0.166 4.166 18 N -0.470 5.470 19 Si 0.772 3.228 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.263 4.263 24 C -0.040 4.040 25 C 0.360 3.640 26 O -0.355 6.355 27 O -0.182 6.182 28 C -0.112 4.112 29 C -0.134 4.134 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.184 0.816 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.088 0.912 40 H 0.151 0.849 41 H 0.135 0.865 42 H 0.149 0.851 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.826 13.090 -2.068 16.498 hybrid contribution 0.877 -0.585 -0.283 1.092 sum -8.948 12.505 -2.350 15.555 Atomic orbital electron populations 1.20817 0.91109 1.02873 1.02400 1.20063 0.96212 0.93177 0.99060 1.20953 0.93800 0.97669 1.01375 1.21291 0.94143 0.97560 0.98530 1.17949 0.87359 0.94237 1.02939 1.19645 0.89941 0.83630 1.05897 1.22925 0.91299 0.98709 1.04576 1.21390 0.94326 0.92794 1.20596 1.22646 0.96034 0.91964 0.79886 1.18375 0.99777 0.91052 1.12747 1.21060 0.95205 0.94018 0.95101 1.19954 1.01105 0.92429 1.08558 1.19723 0.93071 0.84467 0.91540 1.83860 1.40148 1.12395 1.68317 1.21673 0.97002 0.89449 1.38246 0.88033 1.25507 0.99014 0.96139 0.95936 1.70007 1.29335 1.12071 1.35636 0.85522 0.79112 0.79374 0.78816 1.18650 1.19663 1.19677 1.20861 1.01502 0.95420 1.08467 1.20791 0.95675 0.92959 0.94535 1.20774 0.80132 0.89043 0.74034 1.90916 1.36680 1.59343 1.48569 1.84304 1.19589 1.34755 1.79537 1.21137 0.94147 0.96902 0.99023 1.20942 0.93618 0.97810 1.01033 0.91070 0.91380 0.91531 0.85787 0.85329 0.81620 0.84919 0.85408 0.85859 0.91195 0.84904 0.86530 0.85051 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.00 36.01 0.36 -0.36 16 2 C -0.09 -0.76 5.89 -104.51 -0.62 -1.37 16 3 C -0.12 -1.12 9.68 -39.64 -0.38 -1.50 16 4 C -0.10 -1.08 9.70 -39.15 -0.38 -1.46 16 5 C -0.02 -0.30 5.87 -104.98 -0.62 -0.92 16 6 C 0.05 0.73 6.91 -36.89 -0.26 0.48 16 7 C -0.16 -2.16 8.29 -37.06 -0.31 -2.46 16 8 C -0.29 -4.35 6.14 -102.46 -0.63 -4.98 16 9 C 0.11 1.62 9.98 -36.35 -0.36 1.25 16 10 C -0.22 -3.41 5.76 -105.07 -0.60 -4.01 16 11 C -0.04 -0.57 8.16 -39.40 -0.32 -0.89 16 12 C -0.20 -3.68 9.93 -39.81 -0.40 -4.08 16 13 C 0.17 3.60 6.66 -38.80 -0.26 3.34 16 14 O -0.15 -3.74 9.74 1.05 0.01 -3.72 16 15 C -0.39 -9.59 9.48 30.92 0.29 -9.30 16 16 H 0.10 2.28 5.18 -52.48 -0.27 2.01 16 17 C 0.04 1.03 5.49 -17.51 -0.10 0.93 16 18 N -0.84 -22.07 13.67 55.48 0.76 -21.31 16 19 Si 0.95 18.20 29.55 -169.99 -5.02 13.18 16 20 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 21 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 23 C -0.24 -4.57 9.10 -39.82 -0.36 -4.93 16 24 C -0.02 -0.34 9.75 -39.41 -0.38 -0.72 16 25 C 0.51 8.55 8.80 34.51 0.30 8.85 16 26 O -0.47 -8.75 18.05 -18.95 -0.34 -9.10 16 27 O -0.27 -4.28 10.16 -20.43 -0.21 -4.48 16 28 C -0.09 -1.01 9.52 -39.15 -0.37 -1.38 16 29 C -0.12 -1.09 9.68 -39.64 -0.38 -1.47 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 1.38 7.83 -52.49 -0.41 0.97 16 35 H 0.17 2.05 4.93 -52.48 -0.26 1.79 16 36 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.13 1.77 5.17 -52.49 -0.27 1.50 16 38 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 39 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 40 H 0.13 2.46 5.62 -52.49 -0.29 2.17 16 41 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 42 H 0.13 1.25 6.83 -52.49 -0.36 0.90 16 43 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -28.85 375.76 -9.29 -38.15 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.38 Total: 6.62 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -5.77 Total: -24.99 kcal Atomic # 7 Polarization: -22.07 SS G_CDS: 0.76 Total: -21.31 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.54 Total: -17.30 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.02 Total: 13.18 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.85 -9.29 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033888516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.396 kcal (2) G-P(sol) polarization free energy of solvation -28.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds