Wall clock time and date at job start Tue Mar 31 2020 05:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31467 * 1 3 3 Si 1.86794 * 119.99952 * 2 1 4 4 H 1.48503 * 109.47204 * 270.00127 * 3 2 1 5 5 H 1.48496 * 109.47429 * 30.00165 * 3 2 1 6 6 H 1.48507 * 109.47200 * 150.00432 * 3 2 1 7 7 C 1.38795 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00021 * 183.90362 * 7 2 1 9 9 N 1.37077 * 120.00205 * 3.90142 * 7 2 1 10 10 C 1.36285 * 124.88115 * 334.69554 * 9 7 2 11 11 C 1.36244 * 109.70672 * 179.97438 * 10 9 7 12 12 C 1.46987 * 126.70045 * 180.02562 * 11 10 9 13 13 N 1.30010 * 119.99952 * 23.53135 * 12 11 10 14 14 N 1.40101 * 119.99726 * 9.91802 * 13 12 11 15 15 C 1.34782 * 119.99606 * 184.77073 * 14 13 12 16 16 O 1.21610 * 119.99636 * 179.97438 * 15 14 13 17 17 N 1.34772 * 119.99973 * 359.97438 * 15 14 13 18 18 C 1.39918 * 119.99749 * 186.02726 * 17 15 14 19 19 C 1.38876 * 120.06866 * 208.45413 * 18 17 15 20 20 C 1.38119 * 119.92661 * 179.74776 * 19 18 17 21 21 C 1.38282 * 120.06853 * 0.53377 * 20 19 18 22 22 C 1.38286 * 120.14295 * 359.74250 * 21 20 19 23 23 C 1.38111 * 120.06992 * 359.97438 * 22 21 20 24 24 C 1.47568 * 106.60018 * 0.26324 * 11 10 9 25 25 C 1.39198 * 133.90679 * 179.70368 * 24 11 10 26 26 C 1.37899 * 119.68071 * 180.02562 * 25 24 11 27 27 C 1.38671 * 120.29496 * 359.97438 * 26 25 24 28 28 C 1.37933 * 120.60734 * 359.61246 * 27 26 25 29 29 C 1.38323 * 124.88383 * 154.67254 * 9 7 2 30 30 H 0.96999 * 119.99988 * 0.02562 * 1 2 3 31 31 H 1.08001 * 125.14973 * 359.97438 * 10 9 7 32 32 H 1.07993 * 119.99881 * 203.53574 * 12 11 10 33 33 H 0.96999 * 120.00675 * 4.76543 * 14 13 12 34 34 H 0.96997 * 120.00549 * 5.75765 * 17 15 14 35 35 H 1.07997 * 120.03973 * 0.02562 * 19 18 17 36 36 H 1.08001 * 119.96682 * 180.27531 * 20 19 18 37 37 H 1.08001 * 119.93246 * 179.71718 * 21 20 19 38 38 H 1.07999 * 119.96218 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.03629 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.15714 * 0.02562 * 25 24 11 41 41 H 1.08000 * 119.84836 * 179.97438 * 26 25 24 42 42 H 1.08000 * 119.69907 * 180.02562 * 27 26 25 43 43 H 1.08000 * 120.03539 * 179.88212 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2486 1.6177 0.0000 4 1 2.4961 2.0464 -1.4001 5 1 1.4462 2.6526 0.7000 6 1 3.5463 1.4401 0.7000 7 6 2.0086 -1.2020 -0.0005 8 1 3.0867 -1.2032 0.0631 9 7 1.3256 -2.3877 -0.0818 10 6 0.0348 -2.5724 0.3145 11 6 -0.3327 -3.8658 0.0948 12 6 -1.6416 -4.4685 0.3848 13 7 -2.7004 -3.7179 0.4606 14 7 -2.6372 -2.3755 0.0646 15 6 -3.7064 -1.5723 0.2326 16 8 -3.6514 -0.4070 -0.1107 17 7 -4.8365 -2.0607 0.7809 18 6 -5.9859 -1.2649 0.8403 19 6 -6.9163 -1.4608 1.8525 20 6 -8.0473 -0.6701 1.9113 21 6 -8.2590 0.3082 0.9573 22 6 -7.3373 0.5019 -0.0552 23 6 -6.2015 -0.2815 -0.1162 24 6 0.8417 -4.5450 -0.4858 25 6 1.0914 -5.8464 -0.9119 26 6 2.3306 -6.1721 -1.4216 27 6 3.3251 -5.2099 -1.5111 28 6 3.0882 -3.9146 -1.1002 29 6 1.8472 -3.5687 -0.5784 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6007 -1.8090 0.7386 32 1 -1.7237 -5.5348 0.5351 33 1 -1.8239 -2.0240 -0.3303 34 1 -4.8543 -2.9651 1.1310 35 1 -6.7536 -2.2275 2.5955 36 1 -8.7691 -0.8189 2.7008 37 1 -9.1464 0.9222 1.0027 38 1 -7.5058 1.2666 -0.7990 39 1 -5.4821 -0.1300 -0.9074 40 1 0.3183 -6.5974 -0.8436 41 1 2.5274 -7.1811 -1.7527 42 1 4.2921 -5.4754 -1.9122 43 1 3.8700 -3.1731 -1.1722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034690987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:31 Heat of formation + Delta-G solvation = 107.207773 kcal Electronic energy + Delta-G solvation = -29048.281501 eV Core-core repulsion = 25060.133513 eV Total energy + Delta-G solvation = -3988.147988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.133 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.55696 -40.17082 -38.34310 -36.62249 -36.07918 -34.36033 -33.40675 -31.87445 -30.76479 -30.55135 -28.97659 -28.80788 -27.94009 -25.34943 -23.15809 -22.60563 -22.21260 -21.90350 -20.87834 -20.29147 -19.22489 -18.28613 -17.77042 -16.80714 -16.63364 -15.89875 -15.40758 -15.33255 -15.09676 -14.80999 -14.46555 -14.28666 -13.95813 -13.77444 -13.71679 -13.23680 -13.20825 -13.12857 -13.01267 -12.71536 -12.03284 -11.88873 -11.68842 -11.60044 -11.50909 -11.29785 -11.11713 -10.93783 -10.79165 -10.57918 -10.35775 -10.22368 -9.75425 -9.66263 -9.48450 -9.02035 -8.79161 -8.21540 -7.79399 -7.43114 -7.06620 -6.76742 -4.62946 1.45408 1.54995 1.76585 2.13874 2.58542 2.91906 2.94846 3.00212 3.03773 3.52644 3.65137 3.84256 4.00559 4.10122 4.47416 4.52586 4.78564 5.00356 5.05816 5.27806 5.46542 5.51735 5.52698 5.62608 5.64799 5.71912 5.78561 6.02612 6.03923 6.15526 6.18357 6.46172 6.48444 6.50253 6.60775 6.67191 6.68905 6.75043 6.77216 6.86660 6.93587 7.18726 7.24712 7.26501 7.30330 7.36226 7.65230 7.77189 7.83170 8.20462 8.52800 8.62623 9.03240 9.11612 10.03871 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.011048 B = 0.003155 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.729690 B = 8873.636165 C =11084.681571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.043 3.957 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.343 4.343 8 H 0.112 0.888 9 N -0.268 5.268 10 C 0.097 3.903 11 C -0.303 4.303 12 C 0.201 3.799 13 N -0.327 5.327 14 N -0.580 5.580 15 C 0.725 3.275 16 O -0.568 6.568 17 N -0.676 5.676 18 C 0.180 3.820 19 C -0.159 4.159 20 C -0.100 4.100 21 C -0.152 4.152 22 C -0.099 4.099 23 C -0.131 4.131 24 C -0.074 4.074 25 C -0.092 4.092 26 C -0.153 4.153 27 C -0.140 4.140 28 C -0.098 4.098 29 C 0.046 3.954 30 H 0.293 0.707 31 H 0.193 0.807 32 H 0.170 0.830 33 H 0.423 0.577 34 H 0.416 0.584 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.141 0.859 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.499 -4.943 1.596 9.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.168 4.168 3 Si 0.772 3.228 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.471 4.471 8 H 0.129 0.871 9 N 0.072 4.928 10 C -0.048 4.048 11 C -0.314 4.314 12 C -0.005 4.005 13 N -0.137 5.137 14 N -0.333 5.333 15 C 0.426 3.574 16 O -0.442 6.442 17 N -0.323 5.323 18 C 0.083 3.917 19 C -0.180 4.180 20 C -0.119 4.119 21 C -0.171 4.171 22 C -0.118 4.118 23 C -0.152 4.152 24 C -0.080 4.080 25 C -0.111 4.111 26 C -0.172 4.172 27 C -0.160 4.160 28 C -0.118 4.118 29 C -0.061 4.061 30 H 0.104 0.896 31 H 0.209 0.791 32 H 0.186 0.814 33 H 0.274 0.726 34 H 0.253 0.747 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.159 0.841 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.475 -3.535 1.600 9.321 hybrid contribution 1.654 0.542 -0.182 1.750 sum -6.822 -2.993 1.418 7.583 Atomic orbital electron populations 1.69597 1.06231 1.30570 1.40843 1.25611 0.95955 1.00919 0.94266 0.85566 0.79066 0.78919 0.79225 1.19373 1.19841 1.18808 1.19964 0.93356 0.81253 1.52498 0.87058 1.40168 1.09169 1.06412 1.37085 1.22958 0.87623 0.95341 0.98846 1.19298 0.94656 0.94529 1.22961 1.24153 0.86881 0.98180 0.91308 1.74578 1.26727 0.91770 1.20653 1.46910 1.16610 1.07322 1.62487 1.15534 0.79605 0.83839 0.78425 1.90974 1.82129 1.14619 1.56517 1.42678 1.08816 1.17827 1.62984 1.17671 0.86412 0.93367 0.94247 1.20811 0.96207 1.02949 0.98017 1.20843 0.96817 0.95498 0.98709 1.21032 0.99977 0.99696 0.96419 1.21029 0.93633 0.98826 0.98312 1.21379 0.98020 0.96628 0.99147 1.18817 0.92958 0.93049 1.03194 1.20230 0.96569 0.94219 1.00104 1.20641 0.93894 0.98586 1.04123 1.20521 0.98847 0.92628 1.03957 1.20001 0.94433 0.96294 1.01057 1.18483 0.95747 0.87440 1.04458 0.89571 0.79110 0.81361 0.72560 0.74674 0.85915 0.86087 0.86466 0.86093 0.84098 0.87154 0.87295 0.87113 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.99 10.54 55.49 0.58 -20.41 16 2 C 0.04 1.02 5.46 -17.50 -0.10 0.93 16 3 Si 0.95 18.51 29.55 -169.99 -5.02 13.49 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.34 -8.32 9.89 -15.00 -0.15 -8.47 16 8 H 0.11 2.54 7.83 -52.49 -0.41 2.13 16 9 N -0.27 -6.50 2.90 -59.47 -0.17 -6.68 16 10 C 0.10 2.29 7.86 -16.29 -0.13 2.16 16 11 C -0.30 -6.32 5.93 -103.27 -0.61 -6.93 16 12 C 0.20 3.45 11.57 -14.78 -0.17 3.28 16 13 N -0.33 -5.84 10.46 32.08 0.34 -5.50 16 14 N -0.58 -11.92 5.35 27.64 0.15 -11.77 16 15 C 0.73 14.81 8.44 -86.92 -0.73 14.08 16 16 O -0.57 -13.16 14.60 5.27 0.08 -13.09 16 17 N -0.68 -11.27 5.31 -14.22 -0.08 -11.35 16 18 C 0.18 2.84 6.36 -83.70 -0.53 2.31 16 19 C -0.16 -2.05 9.95 -39.39 -0.39 -2.45 16 20 C -0.10 -1.14 10.04 -39.61 -0.40 -1.54 16 21 C -0.15 -1.77 10.04 -39.55 -0.40 -2.17 16 22 C -0.10 -1.32 10.04 -39.61 -0.40 -1.72 16 23 C -0.13 -2.13 8.68 -39.39 -0.34 -2.47 16 24 C -0.07 -1.53 6.36 -104.90 -0.67 -2.20 16 25 C -0.09 -1.61 10.09 -39.35 -0.40 -2.00 16 26 C -0.15 -2.47 10.03 -39.55 -0.40 -2.86 16 27 C -0.14 -2.34 10.02 -39.53 -0.40 -2.74 16 28 C -0.10 -1.92 9.93 -39.41 -0.39 -2.31 16 29 C 0.05 1.04 6.74 -83.82 -0.56 0.48 16 30 H 0.29 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.19 4.74 4.31 -52.49 -0.23 4.52 16 32 H 0.17 2.18 8.06 -52.49 -0.42 1.75 16 33 H 0.42 9.69 5.04 -182.60 -0.92 8.77 16 34 H 0.42 6.11 7.85 -40.82 -0.32 5.79 16 35 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.14 2.58 6.09 -52.49 -0.32 2.26 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 43 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -27.90 369.41 -10.86 -38.76 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -5.14 Total: 25.61 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -7.16 Total: -14.64 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.82 Total: -55.70 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.90 -10.86 -38.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034690987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.964 kcal (2) G-P(sol) polarization free energy of solvation -27.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds