Wall clock time and date at job start Tue Mar 31 2020 05:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 120.00197 * 2 1 4 4 C 1.50692 * 109.47143 * 269.99998 * 3 2 1 5 5 H 1.08000 * 120.00279 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00343 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99755 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00352 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47426 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47461 * 120.00220 * 8 6 4 11 11 H 1.48502 * 109.47043 * 239.99997 * 8 6 4 12 12 C 1.34782 * 120.00120 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00174 * 180.02562 * 12 2 1 14 14 C 1.50700 * 119.99540 * 359.97438 * 12 2 1 15 15 O 1.42905 * 109.47025 * 180.02562 * 14 12 2 16 16 C 1.34902 * 117.00113 * 180.02562 * 15 14 12 17 17 O 1.21622 * 120.00131 * 359.97438 * 16 15 14 18 18 C 1.46235 * 120.00162 * 179.97438 * 16 15 14 19 19 C 1.34914 * 120.00312 * 187.34052 * 18 16 15 20 20 C 1.47176 * 119.99789 * 10.10916 * 19 18 16 21 21 C 1.39855 * 120.17044 * 44.03486 * 20 19 18 22 22 C 1.37887 * 119.82278 * 180.25051 * 21 20 19 23 23 C 1.38403 * 120.17247 * 359.45110 * 22 21 20 24 24 N 1.48021 * 119.82882 * 180.27531 * 23 22 21 25 25 O 1.21796 * 119.99840 * 0.02562 * 24 23 22 26 26 O 1.21802 * 120.00000 * 180.02562 * 24 23 22 27 27 C 1.38409 * 120.34790 * 0.29909 * 23 22 21 28 28 C 1.37889 * 120.17340 * 359.97438 * 27 23 22 29 29 H 1.09008 * 109.47045 * 270.00015 * 1 2 3 30 30 H 1.08997 * 109.47217 * 29.99488 * 1 2 3 31 31 H 1.08999 * 109.47084 * 149.99901 * 1 2 3 32 32 H 1.08997 * 109.47073 * 30.00260 * 3 2 1 33 33 H 1.08997 * 109.47097 * 150.00028 * 3 2 1 34 34 H 0.97001 * 120.00591 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47499 * 59.99892 * 14 12 2 36 36 H 1.08997 * 109.47599 * 299.99908 * 14 12 2 37 37 H 1.08004 * 119.99453 * 7.34703 * 18 16 15 38 38 H 1.08001 * 120.00346 * 190.10723 * 19 18 16 39 39 H 1.08000 * 120.08894 * 0.02562 * 21 20 19 40 40 H 1.07998 * 119.91537 * 179.73288 * 22 21 20 41 41 H 1.08003 * 119.91791 * 179.97438 * 27 23 22 42 42 H 1.08001 * 120.08983 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0975 1.0962 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5534 3.6180 -0.6731 8 14 3.4368 3.4175 -3.4339 9 1 2.8600 2.4169 -4.3673 10 1 2.7989 4.7381 -3.6669 11 1 4.8993 3.5262 -3.6676 12 6 2.1390 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 8 2.3140 -3.5585 -0.0005 16 6 1.7983 -4.8051 -0.0011 17 8 0.5926 -4.9645 -0.0010 18 6 2.6891 -5.9649 -0.0017 19 6 2.1810 -7.2057 -0.1515 20 6 0.7711 -7.3821 -0.5349 21 6 0.2146 -6.5954 -1.5485 22 6 -1.1086 -6.7632 -1.8985 23 6 -1.8824 -7.7149 -1.2574 24 7 -3.3003 -7.8927 -1.6433 25 8 -3.7830 -7.2028 -2.5233 26 8 -3.9843 -8.7290 -1.0808 27 6 -1.3376 -8.5009 -0.2568 28 6 -0.0175 -8.3413 0.1084 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6085 2.0283 0.5139 33 1 3.1499 1.1383 0.5138 34 1 4.0297 4.4443 -0.8503 35 1 0.7583 -2.5298 -0.8903 36 1 0.7591 -2.5303 0.8896 37 1 3.7537 -5.8280 0.1179 38 1 2.8089 -8.0695 0.0099 39 1 0.8186 -5.8560 -2.0533 40 1 -1.5410 -6.1535 -2.6780 41 1 -1.9479 -9.2411 0.2392 42 1 0.4061 -8.9551 0.8896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034720027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:26 Heat of formation + Delta-G solvation = -56.879787 kcal Electronic energy + Delta-G solvation = -29222.174613 eV Core-core repulsion = 24751.476490 eV Total energy + Delta-G solvation = -4470.698124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.40701 -41.12592 -39.79046 -38.88443 -36.86314 -36.79079 -34.95013 -34.73018 -32.72592 -31.87471 -31.33910 -29.47948 -27.59336 -26.87259 -25.78543 -24.42461 -23.55938 -22.83662 -22.26025 -20.19472 -19.69493 -18.91893 -18.86637 -18.41191 -17.75283 -17.05727 -16.97533 -16.52385 -16.28946 -15.79500 -15.60303 -15.31093 -14.88035 -14.70544 -14.55498 -14.28008 -14.13400 -13.55962 -13.32956 -13.14058 -12.66340 -12.39608 -12.31018 -12.21123 -12.05640 -11.95128 -11.79726 -11.44358 -11.36856 -11.29817 -11.14685 -10.98505 -10.78984 -10.68422 -10.63834 -10.23485 -9.72981 -9.70399 -9.18466 -9.09331 -8.51038 -7.82206 -6.11875 -4.17132 -0.69390 0.35065 0.62048 1.14864 1.21602 2.31158 2.48380 2.92864 3.14361 3.25505 3.33353 3.37309 3.75137 3.83592 3.96225 4.08011 4.35611 4.39599 4.45316 4.58180 4.76875 4.79518 4.88301 5.04169 5.10245 5.14577 5.21277 5.23064 5.30179 5.35459 5.51445 5.55561 5.71198 5.79490 5.83689 6.08765 6.12342 6.16830 6.89110 7.30737 7.36016 7.39570 7.44754 7.83718 8.12979 8.19116 8.75412 8.90851 9.48181 10.96355 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.002123 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.940369 B =13185.506218 C =14130.514552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.596 5.596 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.505 3.495 13 O -0.519 6.519 14 C 0.050 3.950 15 O -0.316 6.316 16 C 0.484 3.516 17 O -0.502 6.502 18 C -0.155 4.155 19 C -0.036 4.036 20 C -0.019 4.019 21 C -0.048 4.048 22 C -0.062 4.062 23 C -0.038 4.038 24 N 0.029 4.971 25 O -0.161 6.161 26 O -0.165 6.165 27 C -0.062 4.062 28 C -0.101 4.101 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.138 0.862 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 -25.742 2.410 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.330 5.330 3 C 0.127 3.873 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.290 3.710 13 O -0.395 6.395 14 C -0.028 4.028 15 O -0.230 6.230 16 C 0.330 3.670 17 O -0.393 6.393 18 C -0.174 4.174 19 C -0.054 4.054 20 C -0.019 4.019 21 C -0.067 4.067 22 C -0.081 4.081 23 C -0.120 4.120 24 N 0.548 4.452 25 O -0.377 6.377 26 O -0.380 6.380 27 C -0.081 4.081 28 C -0.119 4.119 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.177 0.823 38 H 0.177 0.823 39 H 0.156 0.844 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.400 -25.448 2.645 26.148 hybrid contribution -0.448 0.587 -0.988 1.233 sum -5.847 -24.861 1.657 25.593 Atomic orbital electron populations 1.21739 0.81043 1.02973 1.00849 1.48113 1.06386 1.07247 1.71269 1.19376 0.92633 0.77442 0.97815 1.21438 1.36775 1.06420 0.92145 0.92347 1.24945 0.95244 0.96328 0.97595 1.69938 1.38245 1.14310 1.30740 0.86413 0.78128 0.78351 0.84359 1.19785 1.20889 1.20809 1.19690 0.88142 0.84238 0.78975 1.90719 1.13317 1.86686 1.48786 1.22586 0.91408 0.84686 1.04132 1.86263 1.39928 1.14088 1.82734 1.21544 0.87719 0.84247 0.73504 1.90949 1.16236 1.86413 1.45701 1.22529 1.00938 0.89293 1.04626 1.22535 0.92848 0.97286 0.92714 1.19412 0.93900 0.94072 0.94522 1.21176 0.93869 0.96070 0.95561 1.20858 0.93426 0.95109 0.98739 1.21208 0.81727 1.05014 1.04090 1.43666 1.03271 0.99045 0.99259 1.94553 1.75407 1.43873 1.23830 1.94525 1.59765 1.29171 1.54569 1.20888 0.95819 0.97548 0.93842 1.21216 0.92397 0.98123 1.00192 0.93274 0.90134 0.92524 0.94541 0.93608 0.92655 0.88790 0.88915 0.82342 0.82317 0.84378 0.82952 0.82942 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.24 59.85 0.61 1.78 16 2 N -0.60 -12.21 2.86 -182.96 -0.52 -12.74 16 3 C 0.25 6.26 5.16 -5.20 -0.03 6.24 16 4 C -0.53 -14.68 9.39 -34.44 -0.32 -15.00 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.51 10.24 7.75 -10.98 -0.09 10.15 16 13 O -0.52 -12.90 16.08 -14.35 -0.23 -13.13 16 14 C 0.05 0.74 4.41 36.01 0.16 0.89 16 15 O -0.32 -4.59 9.65 -47.81 -0.46 -5.05 16 16 C 0.48 5.41 6.91 33.94 0.23 5.64 16 17 O -0.50 -6.10 11.88 -19.36 -0.23 -6.33 16 18 C -0.16 -1.09 10.05 -37.55 -0.38 -1.47 16 19 C -0.04 -0.17 9.81 -37.13 -0.36 -0.54 16 20 C -0.02 -0.13 4.55 -105.06 -0.48 -0.61 16 21 C -0.05 -0.41 6.58 -39.11 -0.26 -0.66 16 22 C -0.06 -0.58 9.54 -39.65 -0.38 -0.96 16 23 C -0.04 -0.37 6.86 -79.82 -0.55 -0.92 16 24 N 0.03 0.35 4.45 34.02 0.15 0.51 16 25 O -0.16 -2.13 18.43 -29.46 -0.54 -2.67 16 26 O -0.17 -2.08 18.43 -29.46 -0.54 -2.62 16 27 C -0.06 -0.47 9.53 -39.65 -0.38 -0.85 16 28 C -0.10 -0.59 9.80 -39.11 -0.38 -0.98 16 29 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 31 H 0.06 0.69 6.44 -51.93 -0.33 0.36 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.09 1.23 7.39 -51.93 -0.38 0.85 16 36 H 0.09 1.19 8.09 -51.93 -0.42 0.77 16 37 H 0.16 0.83 8.06 -52.48 -0.42 0.40 16 38 H 0.16 0.18 8.06 -52.49 -0.42 -0.24 16 39 H 0.14 1.12 7.01 -52.49 -0.37 0.76 16 40 H 0.15 1.32 7.59 -52.49 -0.40 0.92 16 41 H 0.15 0.92 7.60 -52.48 -0.40 0.52 16 42 H 0.15 0.41 8.06 -52.49 -0.42 -0.02 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -36.11 378.08 -8.42 -44.53 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -4.76 Total: -3.66 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -2.69 Total: 4.34 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.37 Total: -37.58 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -2.01 Total: -29.80 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.11 -8.42 -44.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034720027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.351 kcal (2) G-P(sol) polarization free energy of solvation -36.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds