Wall clock time and date at job start Tue Mar 31 2020 04:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 114.00128 * 2 1 4 4 C 1.52997 * 109.46876 * 180.02562 * 3 2 1 5 5 N 1.46510 * 109.47045 * 180.02562 * 4 3 2 6 6 C 1.36488 * 124.77276 * 269.69899 * 5 4 3 7 7 C 1.50691 * 125.42290 * 359.97438 * 6 5 4 8 8 C 1.34365 * 109.15998 * 179.81995 * 6 5 4 9 9 C 1.46898 * 106.35435 * 0.42135 * 8 6 5 10 10 C 1.46455 * 127.06312 * 179.76026 * 9 8 6 11 11 O 1.21339 * 119.99741 * 179.97438 * 10 9 8 12 12 C 1.50699 * 119.99663 * 359.97438 * 10 9 8 13 13 N 1.46902 * 109.46748 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99727 * 189.99861 * 13 12 10 15 15 C 1.50698 * 109.47308 * 168.42694 * 14 13 12 16 16 H 1.08002 * 119.99742 * 354.95183 * 15 14 13 17 17 C 1.37879 * 120.00323 * 174.95958 * 15 14 13 18 18 N 1.31513 * 120.00049 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99933 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47533 * 89.99871 * 19 17 15 21 21 H 1.48502 * 109.46803 * 210.00005 * 19 17 15 22 22 H 1.48504 * 109.47216 * 329.99290 * 19 17 15 23 23 C 1.46896 * 111.00114 * 66.04426 * 13 12 10 24 24 C 1.52993 * 109.47329 * 61.43469 * 23 13 12 25 25 C 1.47197 * 109.47363 * 179.03227 * 24 23 13 26 26 N 9.28285 * 154.71031 * 235.00937 * 4 1 2 27 27 C 1.34484 * 124.77160 * 89.99832 * 5 4 3 28 28 C 1.50696 * 125.93014 * 359.97438 * 27 5 4 29 29 H 1.09006 * 109.46767 * 300.00286 * 1 2 3 30 30 H 1.08998 * 109.46852 * 59.99737 * 1 2 3 31 31 H 1.08994 * 109.47400 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47350 * 300.00168 * 3 2 1 33 33 H 1.09001 * 109.47086 * 59.99987 * 3 2 1 34 34 H 1.09001 * 109.47542 * 299.99491 * 4 3 2 35 35 H 1.09001 * 109.47476 * 59.99979 * 4 3 2 36 36 H 1.09000 * 109.47209 * 90.00052 * 7 6 5 37 37 H 1.08995 * 109.47804 * 210.00169 * 7 6 5 38 38 H 1.08998 * 109.47455 * 330.00665 * 7 6 5 39 39 H 1.07995 * 126.81754 * 180.16172 * 8 6 5 40 40 H 1.09005 * 109.47074 * 299.99614 * 12 10 9 41 41 H 1.08991 * 109.47404 * 60.00020 * 12 10 9 42 42 H 1.08996 * 109.47339 * 288.42245 * 14 13 12 43 43 H 1.08994 * 109.47414 * 48.42398 * 14 13 12 44 44 H 0.96994 * 120.00175 * 179.97438 * 18 17 15 45 45 H 1.09005 * 109.46724 * 181.43483 * 23 13 12 46 46 H 1.08999 * 109.47319 * 301.42662 * 23 13 12 47 47 H 1.09002 * 109.47303 * 299.02812 * 24 23 13 48 48 H 1.08999 * 109.47892 * 59.03130 * 24 23 13 49 49 H 1.08995 * 109.47182 * 89.99648 * 28 27 5 50 50 H 1.08991 * 109.47212 * 210.00092 * 28 27 5 51 51 H 1.09009 * 109.46395 * 330.00082 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1315 2.5229 0.0000 6 6 4.4531 3.2323 -1.1208 7 6 4.2522 2.7636 -2.5388 8 6 4.9742 4.4167 -0.7587 9 6 4.9825 4.4332 0.7102 10 6 5.4624 5.5108 1.5781 11 8 5.4081 5.3881 2.7841 12 6 6.0237 6.7719 0.9734 13 7 6.4328 7.6890 2.0455 14 6 6.7625 9.0151 1.5066 15 6 6.8995 9.9983 2.6404 16 1 6.6766 9.6910 3.6515 17 6 7.3092 11.2902 2.3870 18 7 7.5810 11.6643 1.1558 19 14 7.4784 12.5091 3.7924 20 1 8.8566 12.4437 4.3412 21 1 7.2091 13.8813 3.2926 22 1 6.5036 12.1713 4.8606 23 6 7.5592 7.1364 2.8096 24 6 8.7607 6.9465 1.8817 25 6 9.8965 6.4146 2.6522 26 7 10.7715 6.0089 3.2455 27 6 4.4438 3.2229 1.1050 28 6 4.2412 2.7673 2.5271 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8464 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 3.8575 0.6435 0.8891 35 1 3.8568 0.6437 -0.8908 36 1 3.2648 3.0682 -2.8858 37 1 5.0149 3.2062 -3.1794 38 1 4.3313 1.6771 -2.5770 39 1 5.3222 5.1990 -1.4168 40 1 6.8882 6.5256 0.3568 41 1 5.2621 7.2495 0.3572 42 1 7.7024 8.9608 0.9573 43 1 5.9681 9.3425 0.8358 44 1 7.8689 12.5732 0.9775 45 1 7.8254 7.8237 3.6127 46 1 7.2728 6.1745 3.2348 47 1 8.5000 6.2459 1.0884 48 1 9.0365 7.9056 1.4433 49 1 5.1310 2.2390 2.8696 50 1 4.0651 3.6336 3.1645 51 1 3.3810 2.0995 2.5755 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034802351.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:03 Heat of formation + Delta-G solvation = -2.058648 kcal Electronic energy + Delta-G solvation = -30404.277934 eV Core-core repulsion = 26305.341884 eV Total energy + Delta-G solvation = -4098.936050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.63284 -39.03825 -38.39575 -36.97842 -35.72981 -33.78313 -32.81021 -32.58642 -30.62082 -29.61362 -29.39702 -28.13617 -26.73017 -25.83995 -24.66276 -23.73947 -23.35898 -21.76171 -20.29634 -19.12426 -18.29078 -17.39450 -17.15160 -16.62473 -16.41048 -16.15086 -16.00855 -15.38100 -15.03792 -14.77114 -14.71460 -14.39192 -14.25787 -14.06845 -13.57597 -13.55069 -13.39815 -13.20702 -13.13827 -13.02068 -12.84914 -12.62162 -12.40148 -12.27407 -12.05203 -12.01161 -11.97595 -11.83670 -11.66591 -11.52739 -11.37567 -11.13173 -11.02065 -10.73482 -10.59524 -10.30305 -10.10804 -9.94905 -9.37977 -8.88818 -8.71649 -8.43361 -8.05334 -7.26875 -6.03265 -4.03633 1.54216 2.16828 2.35285 3.20001 3.22796 3.34594 3.38453 3.41155 3.46130 3.47145 4.13896 4.33562 4.37446 4.46363 4.48290 4.61277 4.67454 4.69712 4.79806 4.81507 4.92850 4.97665 5.09573 5.10860 5.14688 5.16816 5.28998 5.33071 5.45866 5.52220 5.57270 5.58537 5.65379 5.72802 5.83574 5.87033 5.94057 5.98638 6.07073 6.28232 6.42547 6.46275 6.74308 6.80798 6.99000 7.07605 7.20669 7.28039 7.79688 7.93884 8.03458 8.12946 8.21095 8.50765 9.05094 9.61145 11.07089 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.002275 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.898320 B =12304.918772 C =12843.385807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.047 3.953 4 C 0.101 3.899 5 N -0.435 5.435 6 C 0.000 4.000 7 C -0.084 4.084 8 C -0.146 4.146 9 C -0.252 4.252 10 C 0.424 3.576 11 O -0.452 6.452 12 C 0.010 3.990 13 N -0.515 5.515 14 C 0.185 3.815 15 C -0.505 4.505 16 H 0.065 0.935 17 C 0.057 3.943 18 N -0.899 5.899 19 Si 0.894 3.106 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.272 1.272 23 C 0.068 3.932 24 C -0.077 4.077 25 C 0.228 3.772 26 N -0.463 5.463 27 C 0.101 3.899 28 C -0.096 4.096 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.150 0.850 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.005 0.995 43 H 0.030 0.970 44 H 0.261 0.739 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.121 0.879 49 H 0.077 0.923 50 H 0.102 0.898 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.681 -23.124 -9.037 27.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.031 4.031 4 C -0.021 4.021 5 N -0.114 5.114 6 C -0.106 4.106 7 C -0.141 4.141 8 C -0.169 4.169 9 C -0.260 4.260 10 C 0.302 3.698 11 O -0.328 6.328 12 C -0.119 4.119 13 N -0.237 5.237 14 C 0.061 3.939 15 C -0.544 4.544 16 H 0.083 0.917 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.722 3.278 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.197 1.197 23 C -0.063 4.063 24 C -0.119 4.119 25 C -0.090 4.090 26 N -0.141 5.141 27 C -0.015 4.015 28 C -0.153 4.153 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.167 0.833 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.023 0.977 43 H 0.048 0.952 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.098 0.902 47 H 0.114 0.886 48 H 0.139 0.861 49 H 0.096 0.904 50 H 0.121 0.879 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.808 -24.042 -7.343 27.773 hybrid contribution 0.186 1.126 -0.456 1.229 sum -11.622 -22.916 -7.799 26.852 Atomic orbital electron populations 1.22795 0.79977 1.03145 1.00443 1.87795 1.20545 1.26896 1.95578 1.22807 0.93109 0.85425 1.01747 1.21566 0.92191 0.82537 1.05842 1.43359 1.48217 1.14273 1.05537 1.20178 1.08124 0.93948 0.88350 1.20330 1.02895 1.01023 0.89846 1.21900 1.04804 0.96850 0.93388 1.21197 1.14120 0.96637 0.94070 1.21540 0.74407 0.85946 0.87907 1.90444 1.45353 1.80240 1.16724 1.22375 1.00841 0.93323 0.95348 1.62208 1.35083 1.03271 1.23157 1.19896 0.95487 0.82899 0.95639 1.21146 1.44234 0.94718 0.94301 0.91666 1.24948 0.95548 0.98339 0.95624 1.69935 1.46517 1.18612 1.18761 0.86546 0.78434 0.80338 0.82442 1.20787 1.21356 1.19726 1.22198 0.86172 1.01496 0.96398 1.20290 0.90409 1.02693 0.98527 1.29091 0.93904 0.92521 0.93444 1.80962 1.12034 1.10697 1.10421 1.20871 0.99918 0.91821 0.88850 1.20591 1.01778 1.03295 0.89610 0.93676 0.93758 0.89156 0.92342 0.92319 0.88234 0.88152 0.91239 0.89908 0.91989 0.83257 0.92141 0.87984 0.97701 0.95186 0.92950 0.89151 0.90239 0.88592 0.86109 0.90406 0.87898 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.88 10.70 -35.23 -0.38 -3.25 16 3 C 0.05 0.32 6.26 37.16 0.23 0.55 16 4 C 0.10 0.70 5.73 -4.04 -0.02 0.68 16 5 N -0.43 -4.15 2.68 -107.61 -0.29 -4.44 16 6 C 0.00 0.00 6.84 -81.89 -0.56 -0.56 16 7 C -0.08 -0.53 10.05 36.00 0.36 -0.16 16 8 C -0.15 -1.63 10.58 -37.45 -0.40 -2.03 16 9 C -0.25 -3.36 6.29 -103.09 -0.65 -4.01 16 10 C 0.42 6.63 6.83 -31.00 -0.21 6.42 16 11 O -0.45 -8.14 12.85 5.51 0.07 -8.07 16 12 C 0.01 0.16 4.79 -4.98 -0.02 0.14 16 13 N -0.51 -10.21 4.43 -237.53 -1.05 -11.26 16 14 C 0.19 4.32 4.54 -4.98 -0.02 4.30 16 15 C -0.51 -13.41 8.40 -34.44 -0.29 -13.70 16 16 H 0.07 1.76 7.42 -52.49 -0.39 1.37 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -25.35 13.29 55.43 0.74 -24.62 16 19 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.07 1.25 4.78 -3.83 -0.02 1.23 16 24 C -0.08 -1.24 5.05 -29.52 -0.15 -1.39 16 25 C 0.23 3.98 15.42 -20.88 -0.32 3.66 16 26 N -0.46 -8.94 18.51 42.01 0.78 -8.16 16 27 C 0.10 1.18 6.94 -81.43 -0.56 0.62 16 28 C -0.10 -0.98 9.28 36.00 0.33 -0.65 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.64 7.49 -51.93 -0.39 0.25 16 35 H 0.10 0.58 6.87 -51.93 -0.36 0.22 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.33 6.92 -51.93 -0.36 -0.03 16 39 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.06 0.85 6.06 -51.93 -0.31 0.53 16 41 H 0.10 1.57 7.91 -51.93 -0.41 1.16 16 42 H 0.01 0.13 6.00 -51.93 -0.31 -0.19 16 43 H 0.03 0.75 7.90 -51.93 -0.41 0.34 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.09 1.86 7.01 -51.93 -0.36 1.49 16 46 H 0.08 1.45 5.86 -51.93 -0.30 1.15 16 47 H 0.10 1.30 6.36 -51.93 -0.33 0.97 16 48 H 0.12 2.10 6.26 -51.93 -0.32 1.77 16 49 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.10 1.26 6.52 -51.93 -0.34 0.92 16 51 H 0.06 0.49 7.58 -51.92 -0.39 0.09 16 LS Contribution 419.20 15.07 6.32 6.32 Total: -1.00 -32.55 419.20 -8.06 -40.61 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.94 Total: -1.26 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.29 Total: -2.18 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.17 Total: -48.48 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.31 Total: -11.32 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.55 -8.06 -40.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034802351.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.548 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds