Wall clock time and date at job start Tue Mar 31 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47504 * 2 1 4 4 C 1.53005 * 109.46978 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47035 * 180.02562 * 4 3 2 6 6 C 1.34731 * 126.50414 * 264.98178 * 5 4 3 7 7 N 1.30869 * 109.71362 * 180.02562 * 6 5 4 8 8 C 1.33548 * 109.80797 * 359.97438 * 7 6 5 9 9 C 1.38049 * 126.50425 * 84.97505 * 5 4 3 10 10 C 1.41152 * 134.58849 * 0.27097 * 9 5 4 11 11 O 1.21801 * 120.38622 * 359.95106 * 10 9 5 12 12 N 1.34938 * 119.22653 * 180.16605 * 10 9 5 13 13 C 1.46491 * 119.50472 * 179.80817 * 12 10 9 14 14 C 1.50702 * 109.46957 * 269.72396 * 13 12 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.34421 * 120.98507 * 359.52946 * 12 10 9 23 23 O 1.21602 * 119.16230 * 180.27631 * 22 12 10 24 24 N 1.34634 * 121.66766 * 0.25391 * 22 12 10 25 25 C 1.46500 * 119.94803 * 180.02562 * 24 22 12 26 26 C 1.53000 * 109.47199 * 89.99812 * 25 24 22 27 27 C 1.53006 * 109.46897 * 65.00371 * 26 25 24 28 28 C 1.52995 * 109.46999 * 184.99956 * 26 25 24 29 29 H 1.08997 * 109.46903 * 59.99635 * 1 2 3 30 30 H 1.08998 * 109.47863 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46827 * 300.00111 * 1 2 3 32 32 H 1.09006 * 109.46827 * 239.99888 * 2 1 3 33 33 H 1.09007 * 109.47071 * 120.00324 * 2 1 3 34 34 H 1.08997 * 109.47390 * 60.00257 * 3 2 1 35 35 H 1.08997 * 109.47339 * 300.00098 * 3 2 1 36 36 H 1.08993 * 109.47154 * 60.00312 * 4 3 2 37 37 H 1.08995 * 109.47346 * 299.99688 * 4 3 2 38 38 H 1.08000 * 125.14914 * 0.02562 * 6 5 4 39 39 H 1.09004 * 109.47166 * 149.72662 * 13 12 10 40 40 H 1.08994 * 109.47507 * 29.72368 * 13 12 10 41 41 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 42 42 H 1.09004 * 109.47156 * 210.00305 * 25 24 22 43 43 H 1.09001 * 109.46759 * 330.00244 * 25 24 22 44 44 H 1.08992 * 109.47160 * 305.00569 * 26 25 24 45 45 H 1.09001 * 109.46921 * 60.00017 * 27 26 25 46 46 H 1.09000 * 109.47360 * 179.97438 * 27 26 25 47 47 H 1.09004 * 109.46898 * 299.99933 * 27 26 25 48 48 H 1.08998 * 109.47165 * 60.00600 * 28 26 25 49 49 H 1.09009 * 109.46987 * 179.97438 * 28 26 25 50 50 H 1.08995 * 109.47767 * 299.99788 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.4146 3.5482 -1.0786 7 7 4.8018 4.7400 -0.7014 8 6 4.7157 4.8444 0.6272 9 6 4.2412 3.6295 1.1058 10 6 4.0582 3.4617 2.4953 11 8 3.6481 2.4044 2.9395 12 7 4.3388 4.4879 3.3254 13 6 4.1471 4.3219 4.7682 14 6 2.7470 4.7372 5.1399 15 1 2.0677 5.0892 4.3776 16 6 2.3311 4.6619 6.4524 17 7 1.1075 5.0192 6.7760 18 14 3.5058 4.0526 7.7708 19 1 4.2567 5.2029 8.3347 20 1 2.7346 3.3872 8.8516 21 1 4.4596 3.0832 7.1744 22 6 4.7969 5.6583 2.8486 23 8 5.0439 6.5593 3.6271 24 7 4.9895 5.8581 1.5312 25 6 5.4909 7.1488 1.0528 26 6 7.0200 7.1184 1.0116 27 6 7.4819 6.0946 -0.0273 28 6 7.5475 8.5035 0.6322 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9330 0.9286 -0.8908 37 1 3.9338 0.9284 0.8891 38 1 4.3850 3.1985 -2.1000 39 1 4.8647 4.9433 5.3040 40 1 4.2995 3.2767 5.0371 41 1 0.8151 4.9666 7.6993 42 1 5.1041 7.3405 0.0519 43 1 5.1612 7.9391 1.7273 44 1 7.4044 6.8393 1.9926 45 1 7.0975 6.3737 -1.0083 46 1 8.5713 6.0732 -0.0571 47 1 7.1060 5.1078 0.2430 48 1 7.2185 9.2329 1.3723 49 1 8.6370 8.4820 0.6033 50 1 7.1632 8.7826 -0.3488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036397692.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:56 Heat of formation + Delta-G solvation = 3.968954 kcal Electronic energy + Delta-G solvation = -32603.483562 eV Core-core repulsion = 28439.382978 eV Total energy + Delta-G solvation = -4164.100584 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.81344 -40.66620 -38.67307 -36.83788 -36.25939 -34.85245 -34.23040 -33.16743 -32.45814 -30.20032 -28.84115 -28.13961 -27.11858 -26.27090 -24.62013 -23.82304 -23.08062 -21.75820 -21.41807 -20.99850 -20.13345 -18.98029 -18.01837 -17.28218 -16.84046 -16.31954 -15.73459 -15.70023 -15.54279 -15.14984 -14.85180 -14.52791 -14.45132 -14.31102 -13.87011 -13.77835 -13.57752 -13.38166 -13.24985 -12.87024 -12.72584 -12.43858 -12.21665 -11.94205 -11.82925 -11.79610 -11.63652 -11.47768 -11.29771 -11.17055 -10.98330 -10.80614 -10.68594 -10.61890 -10.54038 -10.36158 -10.26115 -10.03760 -9.67500 -9.56089 -9.52849 -8.63633 -8.59063 -7.87009 -6.09584 -4.09534 1.16816 2.06686 2.50558 2.65978 2.77594 3.30589 3.35587 3.38550 3.48083 4.00281 4.16609 4.39465 4.43649 4.50778 4.64467 4.73864 4.86039 4.88663 4.94040 4.95870 5.07855 5.20095 5.23717 5.34070 5.42499 5.48895 5.57456 5.60451 5.65418 5.73185 5.73922 5.82054 5.85427 5.88390 5.97087 5.98921 6.08235 6.09218 6.16579 6.22892 6.35127 6.36413 6.42400 6.54621 6.76406 6.91250 7.05781 7.48754 7.60867 7.88853 8.17231 8.36661 8.59776 8.89396 9.47198 11.03584 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.006397 B = 0.005763 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4376.262184 B = 4857.092432 C = 8587.241311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.135 4.135 4 C 0.106 3.894 5 N -0.410 5.410 6 C 0.246 3.754 7 N -0.499 5.499 8 C 0.315 3.685 9 C -0.144 4.144 10 C 0.589 3.411 11 O -0.510 6.510 12 N -0.527 5.527 13 C 0.217 3.783 14 C -0.528 4.528 15 H 0.075 0.925 16 C 0.079 3.921 17 N -0.893 5.893 18 Si 0.874 3.126 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.263 1.263 22 C 0.705 3.295 23 O -0.526 6.526 24 N -0.514 5.514 25 C 0.127 3.873 26 C -0.113 4.113 27 C -0.138 4.138 28 C -0.141 4.141 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.221 0.779 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.266 0.734 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.047 0.953 47 H 0.050 0.950 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.535 -5.019 -20.450 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.174 4.174 4 C -0.016 4.016 5 N -0.092 5.092 6 C -0.037 4.037 7 N -0.224 5.224 8 C 0.085 3.915 9 C -0.261 4.261 10 C 0.381 3.619 11 O -0.385 6.385 12 N -0.269 5.269 13 C 0.099 3.901 14 C -0.566 4.566 15 H 0.093 0.907 16 C -0.124 4.124 17 N -0.531 5.531 18 Si 0.700 3.300 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.188 1.188 22 C 0.407 3.593 23 O -0.397 6.397 24 N -0.242 5.242 25 C 0.005 3.995 26 C -0.133 4.133 27 C -0.195 4.195 28 C -0.199 4.199 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.238 0.762 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.526 -4.572 -19.970 22.190 hybrid contribution 0.073 -0.896 1.085 1.409 sum 8.598 -5.468 -18.886 21.459 Atomic orbital electron populations 1.21750 0.95313 1.01720 1.02233 1.21404 0.96516 0.95415 1.02257 1.21981 0.93057 0.98493 1.03824 1.22144 0.95991 0.78230 1.05220 1.44788 1.46824 1.12696 1.04916 1.25092 0.98522 0.86401 0.93702 1.69635 1.25218 1.18880 1.08659 1.18062 0.97547 0.86847 0.89078 1.19142 1.22082 0.94181 0.90712 1.15427 0.78212 0.84402 0.83866 1.90834 1.43521 1.25717 1.78432 1.46076 1.58100 1.10654 1.12034 1.20044 0.99590 0.99017 0.71485 1.21037 0.95497 1.44908 0.95143 0.90724 1.24737 0.95150 0.94484 0.98066 1.69877 1.16897 1.47549 1.18773 0.86878 0.81433 0.79733 0.81939 1.19640 1.20750 1.18811 1.15592 0.79049 0.83784 0.80839 1.90990 1.54864 1.40744 1.53133 1.44174 1.63507 1.13346 1.03216 1.21787 0.93922 0.82694 1.01055 1.21495 0.94784 0.96541 1.00438 1.21797 0.99997 0.98804 0.98948 1.21725 1.00866 0.95735 1.01526 0.92833 0.92599 0.92191 0.91969 0.91271 0.90166 0.91400 0.88450 0.87794 0.76243 0.93037 0.92703 0.92390 0.88952 0.88484 0.90686 0.91916 0.93362 0.93051 0.92271 0.92452 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.12 -1.03 5.93 -26.74 -0.16 -1.19 16 3 C -0.14 -1.41 5.54 -26.73 -0.15 -1.56 16 4 C 0.11 1.04 5.87 -4.04 -0.02 1.01 16 5 N -0.41 -5.12 2.78 -115.75 -0.32 -5.44 16 6 C 0.25 2.48 12.49 -90.35 -1.13 1.35 16 7 N -0.50 -6.58 10.29 -13.38 -0.14 -6.72 16 8 C 0.32 5.13 5.87 -154.55 -0.91 4.23 16 9 C -0.14 -2.49 6.90 -83.70 -0.58 -3.06 16 10 C 0.59 12.65 7.43 -15.08 -0.11 12.54 16 11 O -0.51 -11.84 15.70 5.10 0.08 -11.76 16 12 N -0.53 -12.27 2.54 -125.46 -0.32 -12.59 16 13 C 0.22 5.65 3.89 -5.20 -0.02 5.63 16 14 C -0.53 -15.77 9.94 -34.44 -0.34 -16.12 16 15 H 0.07 2.46 8.06 -52.49 -0.42 2.03 16 16 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 17 N -0.89 -27.94 13.96 55.43 0.77 -27.17 16 18 Si 0.87 21.90 27.47 -169.99 -4.67 17.23 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 22 C 0.70 15.29 8.11 -87.36 -0.71 14.58 16 23 O -0.53 -12.55 15.26 5.28 0.08 -12.46 16 24 N -0.51 -9.04 2.53 -120.87 -0.31 -9.35 16 25 C 0.13 1.81 4.86 -4.04 -0.02 1.79 16 26 C -0.11 -1.40 3.13 -90.62 -0.28 -1.69 16 27 C -0.14 -1.60 8.33 37.16 0.31 -1.29 16 28 C -0.14 -1.38 9.19 37.16 0.34 -1.04 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.55 8.13 -51.93 -0.42 0.13 16 37 H 0.10 1.23 7.49 -51.93 -0.39 0.84 16 38 H 0.22 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.05 1.33 6.78 -51.93 -0.35 0.98 16 40 H 0.06 1.43 6.44 -51.93 -0.33 1.10 16 41 H 0.27 7.73 8.31 -40.82 -0.34 7.40 16 42 H 0.09 1.17 8.01 -51.93 -0.42 0.75 16 43 H 0.10 1.45 7.38 -51.93 -0.38 1.07 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.70 6.09 -51.93 -0.32 0.38 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 404.73 15.07 6.10 6.10 Total: -1.00 -36.10 404.73 -10.35 -46.45 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -8.12 Total: -0.70 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: -3.51 Total: 16.41 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -0.31 Total: -61.26 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: 0.16 Total: -24.23 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.10 -10.35 -46.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036397692.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.415 kcal (2) G-P(sol) polarization free energy of solvation -36.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds