Wall clock time and date at job start Tue Mar 31 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86799 * 120.00256 * 2 1 4 4 H 1.48495 * 109.46911 * 239.99500 * 3 2 1 5 5 H 1.48500 * 109.47269 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46903 * 119.99933 * 3 2 1 7 7 C 1.39885 * 119.99460 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00013 * 196.90855 * 7 2 1 9 9 C 1.41138 * 120.00282 * 16.91181 * 7 2 1 10 10 C 1.40883 * 120.16200 * 205.25530 * 9 7 2 11 11 C 1.36353 * 119.82925 * 180.02562 * 10 9 7 12 12 C 1.39509 * 120.17117 * 359.97438 * 11 10 9 13 13 N 1.39137 * 119.84073 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00096 * 139.28411 * 13 12 11 15 15 S 1.71196 * 120.00090 * 354.25993 * 14 13 12 16 16 N 1.34778 * 119.99972 * 174.26264 * 14 13 12 17 17 C 1.46497 * 119.99910 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46933 * 179.97438 * 17 16 14 19 19 C 1.53005 * 109.46906 * 179.97438 * 18 17 16 20 20 N 1.46903 * 109.47029 * 180.02562 * 19 18 17 21 21 C 1.47013 * 111.00147 * 293.63940 * 20 19 18 22 22 C 1.53098 * 109.25799 * 177.60786 * 21 20 19 23 23 O 1.43015 * 109.25867 * 56.84901 * 22 21 20 24 24 C 1.43022 * 113.73366 * 301.32493 * 23 22 21 25 25 C 1.47008 * 111.00013 * 169.99688 * 20 19 18 26 26 C 1.39512 * 120.32478 * 0.27197 * 12 11 10 27 27 C 1.36359 * 120.16584 * 359.45198 * 26 12 11 28 28 H 0.97006 * 119.99654 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.08083 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.91433 * 179.97438 * 11 10 9 31 31 H 0.97002 * 120.00058 * 319.28904 * 13 12 11 32 32 H 0.96998 * 120.00189 * 359.72170 * 16 14 13 33 33 H 1.08996 * 109.47504 * 299.99468 * 17 16 14 34 34 H 1.08999 * 109.47487 * 59.99519 * 17 16 14 35 35 H 1.09001 * 109.47594 * 299.99864 * 18 17 16 36 36 H 1.09000 * 109.47239 * 60.00500 * 18 17 16 37 37 H 1.09002 * 109.47248 * 299.99883 * 19 18 17 38 38 H 1.08996 * 109.47090 * 60.00526 * 19 18 17 39 39 H 1.09008 * 109.50338 * 297.54183 * 21 20 19 40 40 H 1.09004 * 109.50826 * 57.66650 * 21 20 19 41 41 H 1.08996 * 109.50384 * 296.90669 * 22 21 20 42 42 H 1.09001 * 109.53752 * 176.79989 * 22 21 20 43 43 H 1.08997 * 109.50409 * 298.73905 * 24 23 22 44 44 H 1.09003 * 109.53895 * 178.63226 * 24 23 22 45 45 H 1.08998 * 109.50981 * 302.32654 * 25 20 19 46 46 H 1.08998 * 109.50380 * 62.41748 * 25 20 19 47 47 H 1.08001 * 119.91862 * 179.70388 * 26 12 11 48 48 H 1.08002 * 120.08585 * 180.26416 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6962 -1.2124 5 1 1.2780 2.7465 0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0532 -1.2317 0.2726 9 6 1.3482 -2.4075 -0.3545 10 6 1.8197 -3.6454 0.1252 11 6 1.1772 -4.7967 -0.2224 12 6 0.0554 -4.7510 -1.0505 13 7 -0.5953 -5.9300 -1.4005 14 6 -1.9419 -5.9716 -1.4362 15 16 -2.8542 -4.6217 -0.9105 16 7 -2.5704 -7.0758 -1.8858 17 6 -4.0342 -7.1207 -1.9252 18 6 -4.4883 -8.4753 -2.4727 19 6 -6.0171 -8.5225 -2.5132 20 7 -6.4531 -9.8233 -3.0384 21 6 -6.0675 -9.9783 -4.4485 22 6 -6.4871 -11.3672 -4.9370 23 8 -7.8939 -11.5317 -4.7392 24 6 -8.3044 -11.3879 -3.3768 25 6 -7.9032 -9.9992 -2.8724 26 6 -0.4143 -3.5294 -1.5336 27 6 0.2145 -2.3692 -1.1899 28 1 -0.4850 0.8401 -0.0004 29 1 2.6883 -3.6823 0.7660 30 1 1.5377 -5.7465 0.1442 31 1 -0.0797 -6.7222 -1.6188 32 1 -2.0535 -7.8392 -2.1875 33 1 -4.4291 -6.9846 -0.9184 34 1 -4.4049 -6.3252 -2.5715 35 1 -4.0935 -8.6112 -3.4796 36 1 -4.1176 -9.2712 -1.8266 37 1 -6.4116 -8.3869 -1.5062 38 1 -6.3881 -7.7267 -3.1590 39 1 -6.5652 -9.2158 -5.0478 40 1 -4.9871 -9.8696 -4.5445 41 1 -5.9487 -12.1292 -4.3736 42 1 -6.2546 -11.4663 -5.9973 43 1 -7.8188 -12.1506 -2.7680 44 1 -9.3863 -11.5016 -3.3080 45 1 -8.1628 -9.9059 -1.8179 46 1 -8.4302 -9.2367 -3.4459 47 1 -1.2805 -3.5020 -2.1781 48 1 -0.1527 -1.4239 -1.5611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038428232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:48 Heat of formation + Delta-G solvation = 2.854650 kcal Electronic energy + Delta-G solvation = -26868.457654 eV Core-core repulsion = 23049.342959 eV Total energy + Delta-G solvation = -3819.114695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.157 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.05353 -39.15958 -37.62598 -36.59696 -35.15784 -33.34494 -32.00827 -31.55291 -29.53299 -29.10225 -27.82468 -25.39055 -24.55016 -24.15691 -23.40475 -21.85010 -21.17703 -20.81566 -20.44444 -17.95707 -17.48103 -17.33152 -16.82180 -16.63867 -16.10454 -15.53281 -15.45426 -15.32770 -15.09341 -14.92823 -14.87323 -14.14038 -13.99426 -13.89117 -13.27597 -12.88389 -12.70063 -12.49868 -12.30660 -12.09321 -12.01072 -11.84147 -11.77429 -11.70444 -11.35054 -11.13652 -11.08137 -10.96343 -10.81529 -10.56694 -10.45741 -10.14471 -9.88737 -9.64937 -9.33588 -8.89804 -8.84910 -7.68401 -7.38177 -7.01597 -6.78754 -6.25631 -4.32885 1.73334 2.44426 2.83424 2.98951 3.07643 3.09585 3.15279 3.25353 3.31993 3.44686 3.91887 3.98091 4.35866 4.43798 4.48569 4.62787 4.64183 4.68285 4.71584 4.82062 4.91355 5.03435 5.14023 5.20278 5.28219 5.31689 5.38983 5.46242 5.52741 5.69403 5.79206 5.82776 6.08696 6.28335 6.37373 6.44552 6.46538 6.58103 6.66886 6.98851 7.03903 7.12208 7.22548 7.30833 7.60791 7.67431 7.94483 8.05695 8.20344 8.27860 8.64021 8.86552 8.97273 10.16481 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.030570 B = 0.001595 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.720239 B =17555.940519 C =18025.322428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.453 4.453 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.226 4.226 11 C -0.081 4.081 12 C -0.039 4.039 13 N -0.591 5.591 14 C 0.541 3.459 15 S -0.636 6.636 16 N -0.700 5.700 17 C 0.132 3.868 18 C -0.129 4.129 19 C 0.060 3.940 20 N -0.537 5.537 21 C 0.013 3.987 22 C 0.063 3.937 23 O -0.387 6.387 24 C 0.064 3.936 25 C 0.017 3.983 26 C -0.038 4.038 27 C -0.165 4.165 28 H 0.284 0.716 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.389 0.611 32 H 0.390 0.610 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.110 0.890 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.122 -20.588 -8.338 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.482 4.482 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.247 4.247 11 C -0.102 4.102 12 C -0.132 4.132 13 N -0.210 5.210 14 C 0.182 3.818 15 S -0.508 6.508 16 N -0.333 5.333 17 C 0.008 3.992 18 C -0.167 4.167 19 C -0.069 4.069 20 N -0.263 5.263 21 C -0.115 4.115 22 C -0.014 4.014 23 O -0.305 6.305 24 C -0.014 4.014 25 C -0.112 4.112 26 C -0.060 4.060 27 C -0.185 4.185 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.225 0.775 32 H 0.225 0.775 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.128 0.872 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.959 -19.859 -7.826 24.467 hybrid contribution 1.048 0.022 -0.513 1.167 sum -10.912 -19.837 -8.339 24.127 Atomic orbital electron populations 1.69883 1.07507 1.29633 1.32765 1.25986 0.94774 1.01448 0.92464 0.86347 0.80134 0.80187 0.79971 1.18764 1.20236 1.18967 1.19590 0.97806 0.91255 1.39503 0.90293 1.17715 0.90866 0.91941 0.87838 1.20466 1.04303 0.92405 1.07494 1.19982 0.96105 0.97111 0.96962 1.16898 1.00390 0.83715 1.12187 1.41981 1.02352 1.13923 1.62767 1.22406 0.86021 0.90180 0.83168 1.93414 1.62946 1.28026 1.66446 1.44766 1.08248 1.15010 1.65248 1.21466 0.77275 0.97028 1.03459 1.21804 0.95736 0.97186 1.01993 1.21985 0.94862 0.89079 1.00924 1.62192 1.14028 1.32356 1.17693 1.22871 1.01978 0.98077 0.88620 1.22672 0.81859 0.95400 1.01433 1.87995 1.23531 1.92373 1.26645 1.22674 1.00327 0.95425 0.82926 1.22796 0.87998 0.98085 1.02281 1.20509 0.96531 0.91112 0.97816 1.20873 0.99217 0.96649 1.01791 0.90497 0.88632 0.89550 0.77540 0.77470 0.89807 0.90027 0.91407 0.90423 0.89801 0.93873 0.93715 0.89305 0.92232 0.88423 0.92199 0.88369 0.89334 0.93707 0.87174 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.42 10.94 55.54 0.61 -19.82 16 2 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 3 Si 0.91 18.52 29.59 -169.99 -5.03 13.49 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.45 -11.85 9.04 -37.87 -0.34 -12.20 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 9 C 0.12 3.17 5.57 -106.80 -0.59 2.57 16 10 C -0.23 -5.43 9.74 -39.26 -0.38 -5.81 16 11 C -0.08 -1.75 9.90 -39.79 -0.39 -2.15 16 12 C -0.04 -0.85 5.94 -83.60 -0.50 -1.35 16 13 N -0.59 -9.98 5.29 -11.28 -0.06 -10.04 16 14 C 0.54 9.21 7.73 -86.92 -0.67 8.54 16 15 S -0.64 -14.36 24.96 -107.50 -2.68 -17.04 16 16 N -0.70 -8.14 5.56 -62.03 -0.34 -8.49 16 17 C 0.13 1.38 5.13 -4.04 -0.02 1.36 16 18 C -0.13 -0.92 5.26 -26.73 -0.14 -1.06 16 19 C 0.06 0.43 4.96 -3.82 -0.02 0.41 16 20 N -0.54 -3.89 4.73 -234.31 -1.11 -5.00 16 21 C 0.01 0.08 5.44 -3.71 -0.02 0.06 16 22 C 0.06 0.41 7.01 37.21 0.26 0.67 16 23 O -0.39 -3.27 10.83 -35.23 -0.38 -3.66 16 24 C 0.06 0.41 7.01 37.21 0.26 0.67 16 25 C 0.02 0.11 5.64 -3.71 -0.02 0.09 16 26 C -0.04 -0.93 7.76 -39.78 -0.31 -1.24 16 27 C -0.16 -4.37 8.63 -39.26 -0.34 -4.71 16 28 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 29 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 30 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.39 4.93 8.84 -40.82 -0.36 4.57 16 32 H 0.39 3.21 8.49 -40.82 -0.35 2.86 16 33 H 0.08 1.01 7.99 -51.93 -0.41 0.59 16 34 H 0.08 0.98 7.99 -51.93 -0.42 0.57 16 35 H 0.07 0.44 6.52 -51.93 -0.34 0.10 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.60 8.04 -51.93 -0.42 0.18 16 38 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 39 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 40 H 0.09 0.51 6.38 -51.93 -0.33 0.18 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 46 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.11 2.72 6.16 -47.13 -0.29 2.43 16 48 H 0.12 3.33 6.17 -52.49 -0.32 3.01 16 LS Contribution 395.23 15.07 5.96 5.96 Total: -1.00 -32.76 395.23 -13.80 -46.56 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.43 Total: 10.42 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -3.32 Total: -12.38 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.90 Total: -43.34 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -0.38 Total: -3.66 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: -14.36 SS G_CDS: -2.68 Total: -17.04 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.76 -13.80 -46.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038428232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.411 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds