Wall clock time and date at job start Tue Mar 31 2020 06:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86799 * 120.00256 * 2 1 4 4 H 1.48495 * 109.46911 * 239.99500 * 3 2 1 5 5 H 1.48500 * 109.47269 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46903 * 119.99933 * 3 2 1 7 7 C 1.39885 * 119.99460 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00013 * 196.90855 * 7 2 1 9 9 C 1.41138 * 120.00282 * 16.91181 * 7 2 1 10 10 C 1.40883 * 120.16200 * 205.25530 * 9 7 2 11 11 C 1.36353 * 119.82925 * 180.02562 * 10 9 7 12 12 C 1.39509 * 120.17117 * 359.97438 * 11 10 9 13 13 N 1.39137 * 119.84073 * 180.02562 * 12 11 10 14 14 C 1.34777 * 120.00096 * 139.28411 * 13 12 11 15 15 S 1.71196 * 120.00090 * 354.25993 * 14 13 12 16 16 N 1.34778 * 119.99972 * 174.26264 * 14 13 12 17 17 C 1.46497 * 119.99910 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46933 * 179.97438 * 17 16 14 19 19 C 1.53005 * 109.46906 * 179.97438 * 18 17 16 20 20 N 1.46903 * 109.47029 * 180.02562 * 19 18 17 21 21 C 1.47013 * 111.00147 * 293.63940 * 20 19 18 22 22 C 1.53098 * 109.25799 * 177.60786 * 21 20 19 23 23 O 1.43015 * 109.25867 * 56.84901 * 22 21 20 24 24 C 1.43022 * 113.73366 * 301.32493 * 23 22 21 25 25 C 1.47008 * 111.00013 * 169.99688 * 20 19 18 26 26 C 1.39512 * 120.32478 * 0.27197 * 12 11 10 27 27 C 1.36359 * 120.16584 * 359.45198 * 26 12 11 28 28 H 0.97006 * 119.99654 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.08083 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.91433 * 179.97438 * 11 10 9 31 31 H 0.97002 * 120.00058 * 319.28904 * 13 12 11 32 32 H 0.96998 * 120.00189 * 359.72170 * 16 14 13 33 33 H 1.08996 * 109.47504 * 299.99468 * 17 16 14 34 34 H 1.08999 * 109.47487 * 59.99519 * 17 16 14 35 35 H 1.09001 * 109.47594 * 299.99864 * 18 17 16 36 36 H 1.09000 * 109.47239 * 60.00500 * 18 17 16 37 37 H 1.09002 * 109.47248 * 299.99883 * 19 18 17 38 38 H 1.08996 * 109.47090 * 60.00526 * 19 18 17 39 39 H 1.09008 * 109.50338 * 297.54183 * 21 20 19 40 40 H 1.09004 * 109.50826 * 57.66650 * 21 20 19 41 41 H 1.08996 * 109.50384 * 296.90669 * 22 21 20 42 42 H 1.09001 * 109.53752 * 176.79989 * 22 21 20 43 43 H 1.08997 * 109.50409 * 298.73905 * 24 23 22 44 44 H 1.09003 * 109.53895 * 178.63226 * 24 23 22 45 45 H 1.08998 * 109.50981 * 302.32654 * 25 20 19 46 46 H 1.08998 * 109.50380 * 62.41748 * 25 20 19 47 47 H 1.08001 * 119.91862 * 179.70388 * 26 12 11 48 48 H 1.08002 * 120.08585 * 180.26416 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6962 -1.2124 5 1 1.2780 2.7465 0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0532 -1.2317 0.2726 9 6 1.3482 -2.4075 -0.3545 10 6 1.8197 -3.6454 0.1252 11 6 1.1772 -4.7967 -0.2224 12 6 0.0554 -4.7510 -1.0505 13 7 -0.5953 -5.9300 -1.4005 14 6 -1.9419 -5.9716 -1.4362 15 16 -2.8542 -4.6217 -0.9105 16 7 -2.5704 -7.0758 -1.8858 17 6 -4.0342 -7.1207 -1.9252 18 6 -4.4883 -8.4753 -2.4727 19 6 -6.0171 -8.5225 -2.5132 20 7 -6.4531 -9.8233 -3.0384 21 6 -6.0675 -9.9783 -4.4485 22 6 -6.4871 -11.3672 -4.9370 23 8 -7.8939 -11.5317 -4.7392 24 6 -8.3044 -11.3879 -3.3768 25 6 -7.9032 -9.9992 -2.8724 26 6 -0.4143 -3.5294 -1.5336 27 6 0.2145 -2.3692 -1.1899 28 1 -0.4850 0.8401 -0.0004 29 1 2.6883 -3.6823 0.7660 30 1 1.5377 -5.7465 0.1442 31 1 -0.0797 -6.7222 -1.6188 32 1 -2.0535 -7.8392 -2.1875 33 1 -4.4291 -6.9846 -0.9184 34 1 -4.4049 -6.3252 -2.5715 35 1 -4.0935 -8.6112 -3.4796 36 1 -4.1176 -9.2712 -1.8266 37 1 -6.4116 -8.3869 -1.5062 38 1 -6.3881 -7.7267 -3.1590 39 1 -6.5652 -9.2158 -5.0478 40 1 -4.9871 -9.8696 -4.5445 41 1 -5.9487 -12.1292 -4.3736 42 1 -6.2546 -11.4663 -5.9973 43 1 -7.8188 -12.1506 -2.7680 44 1 -9.3863 -11.5016 -3.3080 45 1 -8.1628 -9.9059 -1.8179 46 1 -8.4302 -9.2367 -3.4459 47 1 -1.2805 -3.5020 -2.1781 48 1 -0.1527 -1.4239 -1.5611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038428232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:46 Heat of formation + Delta-G solvation = -18.948082 kcal Electronic energy + Delta-G solvation = -26869.403091 eV Core-core repulsion = 23049.342959 eV Total energy + Delta-G solvation = -3820.060133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.157 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.77280 -40.52254 -39.06162 -37.51026 -36.46285 -35.02243 -32.93712 -32.10700 -31.41722 -30.78454 -28.65297 -26.89678 -25.41386 -25.06343 -24.69050 -22.97525 -22.78620 -22.02322 -21.33797 -19.40081 -19.18841 -18.81869 -17.59419 -17.22944 -17.10373 -16.80609 -16.71892 -16.12507 -16.05396 -15.95214 -15.72700 -15.66136 -15.31370 -14.77585 -14.57459 -14.40541 -13.94116 -13.73073 -13.57677 -13.33785 -13.08940 -12.93320 -12.76290 -12.74334 -12.56974 -12.36359 -12.31322 -12.24941 -12.11120 -11.78537 -11.66867 -11.48712 -11.38761 -11.09381 -10.68346 -10.38767 -9.54895 -9.46114 -9.13315 -8.81704 -8.64125 -8.07239 -6.28009 0.21100 0.94533 1.12809 1.26463 1.39799 1.52260 1.55460 1.67214 2.21830 2.61251 2.76620 2.80397 2.96678 3.77870 3.80191 3.89690 3.90749 4.01346 4.06654 4.19656 4.28154 4.36757 4.42171 4.48534 4.53896 4.54963 4.64336 4.72488 4.73889 4.81481 4.83699 4.89367 4.98649 4.99667 5.09257 5.13893 5.14363 5.24608 5.36998 5.47759 5.73965 5.82767 5.90329 5.90899 6.02214 6.13741 6.17489 6.24013 6.38345 6.60926 6.72552 6.94228 7.06497 8.33449 Molecular weight = 349.16amu Principal moments of inertia in cm(-1) A = 0.030570 B = 0.001595 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.720239 B =17555.940519 C =18025.322428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.030 3.970 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.489 4.489 8 H 0.084 0.916 9 C 0.088 3.912 10 C -0.238 4.238 11 C -0.075 4.075 12 C -0.022 4.022 13 N -0.580 5.580 14 C 0.572 3.428 15 S -0.745 6.745 16 N -0.662 5.662 17 C 0.133 3.867 18 C -0.110 4.110 19 C 0.060 3.940 20 N -0.540 5.540 21 C 0.012 3.988 22 C 0.061 3.939 23 O -0.409 6.409 24 C 0.062 3.938 25 C 0.016 3.984 26 C -0.044 4.044 27 C -0.190 4.190 28 H 0.287 0.713 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.419 0.581 32 H 0.417 0.583 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.035 0.965 47 H 0.101 0.899 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.133 -23.671 -8.721 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.518 4.518 8 H 0.102 0.898 9 C 0.086 3.914 10 C -0.258 4.258 11 C -0.096 4.096 12 C -0.116 4.116 13 N -0.202 5.202 14 C 0.208 3.792 15 S -0.618 6.618 16 N -0.293 5.293 17 C 0.009 3.991 18 C -0.149 4.149 19 C -0.068 4.068 20 N -0.265 5.265 21 C -0.116 4.116 22 C -0.016 4.016 23 O -0.328 6.328 24 C -0.015 4.015 25 C -0.113 4.113 26 C -0.066 4.066 27 C -0.211 4.211 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.149 0.851 31 H 0.259 0.741 32 H 0.257 0.743 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.120 0.880 41 H 0.082 0.918 42 H 0.128 0.872 43 H 0.082 0.918 44 H 0.129 0.871 45 H 0.117 0.883 46 H 0.054 0.946 47 H 0.119 0.881 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.965 -23.049 -8.240 26.822 hybrid contribution 0.606 0.662 -0.472 1.014 sum -10.359 -22.387 -8.712 26.161 Atomic orbital electron populations 1.69981 1.09286 1.30652 1.34451 1.26899 0.95395 1.04960 0.91313 0.85211 0.78655 0.75314 0.80295 1.18109 1.19698 1.17982 1.19881 0.98271 0.92282 1.41348 0.89768 1.18054 0.91348 0.93498 0.88548 1.20720 1.05000 0.92378 1.07690 1.20326 0.95253 0.98254 0.95739 1.16835 0.99967 0.84297 1.10479 1.41572 1.02201 1.13647 1.62817 1.21700 0.85567 0.89772 0.82133 1.93770 1.64898 1.32307 1.70830 1.44693 1.09107 1.13812 1.61685 1.21561 0.75943 0.98868 1.02769 1.21651 0.95563 0.94900 1.02759 1.21949 0.94901 0.89096 1.00867 1.62223 1.14384 1.31899 1.18019 1.22915 1.02618 0.97909 0.88124 1.22796 0.81101 0.95304 1.02378 1.87966 1.24637 1.92488 1.27754 1.22786 1.01248 0.95236 0.82194 1.22838 0.87628 0.98013 1.02777 1.20522 0.96020 0.92007 0.98049 1.20757 1.00495 0.96485 1.03388 0.90228 0.87286 0.85104 0.74088 0.74278 0.91025 0.91436 0.89920 0.89204 0.89787 0.94657 0.94810 0.87999 0.91790 0.87189 0.91839 0.87074 0.88343 0.94641 0.88060 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.53 10.94 21.82 0.24 -45.29 16 2 C 0.03 1.56 5.15 85.23 0.44 2.00 16 3 Si 0.99 38.91 29.59 68.60 2.03 40.94 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 7 C -0.49 -26.49 9.04 23.38 0.21 -26.27 16 8 H 0.08 4.27 7.90 -2.91 -0.02 4.25 16 9 C 0.09 4.83 5.57 -21.27 -0.12 4.71 16 10 C -0.24 -11.28 9.74 22.48 0.22 -11.06 16 11 C -0.08 -3.08 9.90 22.14 0.22 -2.86 16 12 C -0.02 -0.92 5.94 38.60 0.23 -0.69 16 13 N -0.58 -17.70 5.29 -189.61 -1.00 -18.70 16 14 C 0.57 18.23 7.73 179.05 1.38 19.62 16 15 S -0.74 -34.21 24.96 -56.49 -1.41 -35.62 16 16 N -0.66 -13.07 5.56 -350.17 -1.95 -15.02 16 17 C 0.13 2.49 5.13 86.38 0.44 2.93 16 18 C -0.11 -1.21 5.26 30.60 0.16 -1.05 16 19 C 0.06 0.75 4.96 86.30 0.43 1.18 16 20 N -0.54 -6.69 4.73 -895.21 -4.23 -10.92 16 21 C 0.01 0.14 5.44 86.31 0.47 0.61 16 22 C 0.06 0.68 7.01 72.01 0.50 1.18 16 23 O -0.41 -6.37 10.83 -148.98 -1.61 -7.99 16 24 C 0.06 0.70 7.01 72.01 0.50 1.20 16 25 C 0.02 0.18 5.64 86.32 0.49 0.67 16 26 C -0.04 -2.22 7.76 22.14 0.17 -2.05 16 27 C -0.19 -10.61 8.63 22.48 0.19 -10.42 16 28 H 0.29 14.63 8.30 -92.70 -0.77 13.86 16 29 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.42 8.43 8.84 -92.71 -0.82 7.61 16 32 H 0.42 4.62 8.49 -92.71 -0.79 3.83 16 33 H 0.07 1.62 7.99 -2.39 -0.02 1.61 16 34 H 0.07 1.56 7.99 -2.39 -0.02 1.54 16 35 H 0.08 0.72 6.52 -2.39 -0.02 0.71 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 1.06 8.04 -2.39 -0.02 1.04 16 38 H 0.04 0.50 8.12 -2.39 -0.02 0.48 16 39 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 40 H 0.10 0.85 6.38 -2.38 -0.02 0.84 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.10 0.94 8.09 -2.39 -0.02 0.92 16 46 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.10 5.21 6.16 -6.32 -0.04 5.17 16 48 H 0.09 5.61 6.17 -2.91 -0.02 5.60 16 Total: -1.00 -76.82 395.23 -2.63 -79.45 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: -0.65 Total: 33.45 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 5.95 Total: -20.30 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -6.94 Total: -89.93 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -1.61 Total: -7.99 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Atomic # 16 Polarization: -34.21 SS G_CDS: -1.41 Total: -35.62 kcal Total: -76.82 -2.63 -79.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038428232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.504 kcal (2) G-P(sol) polarization free energy of solvation -76.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds