Wall clock time and date at job start Tue Mar 31 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47204 * 2 1 4 4 C 1.53005 * 109.46821 * 119.99755 * 2 1 3 5 5 N 1.46503 * 109.47035 * 175.00230 * 4 2 1 6 6 C 1.34731 * 126.50414 * 264.98178 * 5 4 2 7 7 N 1.30869 * 109.71362 * 180.02562 * 6 5 4 8 8 C 1.33548 * 109.80797 * 359.97438 * 7 6 5 9 9 C 1.38049 * 126.50425 * 84.97505 * 5 4 2 10 10 C 1.41152 * 134.58849 * 0.27097 * 9 5 4 11 11 O 1.21801 * 120.38622 * 359.95106 * 10 9 5 12 12 N 1.34938 * 119.22653 * 180.16605 * 10 9 5 13 13 C 1.46491 * 119.50472 * 179.80817 * 12 10 9 14 14 C 1.50702 * 109.46957 * 269.72396 * 13 12 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.34421 * 120.98507 * 359.52946 * 12 10 9 23 23 O 1.21602 * 119.16230 * 180.27631 * 22 12 10 24 24 N 1.34634 * 121.66766 * 0.25391 * 22 12 10 25 25 C 1.46500 * 119.94803 * 180.02562 * 24 22 12 26 26 C 1.53000 * 109.47199 * 89.99812 * 25 24 22 27 27 C 1.53006 * 109.46897 * 65.00371 * 26 25 24 28 28 C 1.52995 * 109.46999 * 184.99956 * 26 25 24 29 29 H 1.08990 * 109.47402 * 299.99734 * 1 2 3 30 30 H 1.09000 * 109.46929 * 60.00743 * 1 2 3 31 31 H 1.09004 * 109.46917 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47242 * 239.99839 * 2 1 3 33 33 H 1.09004 * 109.46916 * 300.00338 * 3 2 1 34 34 H 1.09004 * 109.46882 * 59.99333 * 3 2 1 35 35 H 1.08998 * 109.47253 * 179.97438 * 3 2 1 36 36 H 1.08993 * 109.47154 * 55.00523 * 4 2 1 37 37 H 1.08995 * 109.47346 * 294.99899 * 4 2 1 38 38 H 1.08000 * 125.14914 * 0.02562 * 6 5 4 39 39 H 1.09004 * 109.47166 * 149.72662 * 13 12 10 40 40 H 1.08994 * 109.47507 * 29.72368 * 13 12 10 41 41 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.47156 * 210.00305 * 25 24 22 43 43 H 1.09001 * 109.46759 * 330.00244 * 25 24 22 44 44 H 1.08992 * 109.47160 * 305.00569 * 26 25 24 45 45 H 1.09001 * 109.46921 * 60.00017 * 27 26 25 46 46 H 1.09000 * 109.47360 * 179.97438 * 27 26 25 47 47 H 1.09004 * 109.46898 * 299.99933 * 27 26 25 48 48 H 1.08998 * 109.47165 * 60.00600 * 28 26 25 49 49 H 1.09009 * 109.46987 * 179.97438 * 28 26 25 50 50 H 1.08995 * 109.47767 * 299.99788 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.2103 -1.8752 0.7319 7 7 5.4899 -1.6193 0.8313 8 6 5.6689 -0.4034 1.3539 9 6 4.4092 0.1306 1.5951 10 6 4.3054 1.4210 2.1576 11 8 3.2123 1.9087 2.3830 12 7 5.4312 2.1097 2.4388 13 6 5.3305 3.4511 3.0188 14 6 5.2844 4.4742 1.9133 15 1 5.3255 4.1569 0.8817 16 6 5.1834 5.8150 2.2185 17 7 5.1329 6.2014 3.4746 18 14 5.1185 7.0826 0.8480 19 1 5.1910 6.3949 -0.4661 20 1 3.8468 7.8443 0.9381 21 1 6.2654 8.0163 0.9825 22 6 6.6437 1.5810 2.1998 23 8 7.6365 2.2289 2.4706 24 7 6.7868 0.3522 1.6685 25 6 8.1267 -0.1875 1.4242 26 6 8.6046 -0.9466 2.6637 27 6 7.7112 -2.1681 2.8895 28 6 10.0500 -1.4033 2.4562 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6054 -1.7197 1.2952 37 1 1.7516 -0.1583 2.1370 38 1 3.7877 -2.7891 0.3411 39 1 6.1976 3.6392 3.6520 40 1 4.4219 3.5212 3.6168 41 1 5.0622 7.1447 3.6894 42 1 8.0951 -0.8664 0.5720 43 1 8.8147 0.6308 1.2116 44 1 8.5516 -0.2920 3.5335 45 1 7.7642 -2.8227 2.0196 46 1 8.0519 -2.7092 3.7723 47 1 6.6814 -1.8427 3.0373 48 1 10.6864 -0.5331 2.2953 49 1 10.3906 -1.9437 3.3395 50 1 10.1029 -2.0580 1.5864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040461229.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:00 Heat of formation + Delta-G solvation = 5.248812 kcal Electronic energy + Delta-G solvation = -33249.668452 eV Core-core repulsion = 29085.623367 eV Total energy + Delta-G solvation = -4164.045085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.78906 -40.56961 -38.63794 -36.85415 -36.50419 -34.70369 -34.15223 -32.70954 -32.37410 -29.89309 -27.63834 -27.16877 -27.06451 -26.60077 -26.11706 -24.13984 -23.03525 -21.97876 -21.30222 -20.48464 -20.07368 -18.79503 -18.03347 -17.06694 -16.71037 -16.20180 -15.71939 -15.56364 -15.16540 -15.00405 -14.78002 -14.53193 -14.39394 -14.19875 -13.82570 -13.67207 -13.51448 -13.24274 -12.95741 -12.76767 -12.41246 -12.31315 -12.17265 -12.01294 -11.87461 -11.56008 -11.39472 -11.25330 -11.08107 -10.97105 -10.93353 -10.87028 -10.69666 -10.64546 -10.51868 -10.24274 -10.20859 -9.91911 -9.80800 -9.49644 -9.39494 -8.51338 -8.44993 -7.79264 -6.07562 -4.10698 1.23820 2.15884 2.58898 2.73241 2.84018 3.31387 3.37588 3.42163 3.59843 4.09189 4.22718 4.44531 4.45503 4.57073 4.63285 4.79615 4.89626 4.93075 5.00548 5.11326 5.13596 5.28194 5.29690 5.47004 5.47886 5.60697 5.65690 5.70158 5.74644 5.79163 5.85998 5.91173 5.92367 5.96182 6.03795 6.07531 6.12227 6.24833 6.28179 6.41557 6.47369 6.52485 6.72825 6.74890 6.99534 7.27097 7.34521 7.68543 7.85804 8.03322 8.10407 8.32421 8.66004 8.89421 9.52205 11.02333 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.007551 B = 0.005606 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3707.359349 B = 4993.195289 C = 8034.541399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.149 4.149 4 C 0.108 3.892 5 N -0.409 5.409 6 C 0.242 3.758 7 N -0.500 5.500 8 C 0.311 3.689 9 C -0.140 4.140 10 C 0.585 3.415 11 O -0.505 6.505 12 N -0.531 5.531 13 C 0.246 3.754 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.891 5.891 18 Si 0.902 3.098 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.702 3.298 23 O -0.527 6.527 24 N -0.516 5.516 25 C 0.128 3.872 26 C -0.113 4.113 27 C -0.138 4.138 28 C -0.140 4.140 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.220 0.780 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.264 0.736 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 -20.710 -5.543 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 C -0.207 4.207 4 C -0.014 4.014 5 N -0.091 5.091 6 C -0.041 4.041 7 N -0.225 5.225 8 C 0.081 3.919 9 C -0.258 4.258 10 C 0.377 3.623 11 O -0.381 6.381 12 N -0.273 5.273 13 C 0.130 3.870 14 C -0.561 4.561 15 H 0.076 0.924 16 C -0.137 4.137 17 N -0.530 5.530 18 Si 0.729 3.271 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.207 1.207 22 C 0.404 3.596 23 O -0.398 6.398 24 N -0.244 5.244 25 C 0.006 3.994 26 C -0.133 4.133 27 C -0.195 4.195 28 C -0.198 4.198 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.236 0.764 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.671 -20.276 -5.309 21.129 hybrid contribution -0.706 1.111 -0.607 1.449 sum -3.377 -19.166 -5.916 20.340 Atomic orbital electron populations 1.21759 0.93797 1.01642 1.02880 1.21476 0.96484 0.98146 0.96457 1.22022 1.01488 0.94184 1.02959 1.22234 0.74795 1.02713 1.01611 1.44751 1.07368 1.12252 1.44694 1.25052 0.85682 0.93650 0.99707 1.69623 1.16254 1.13627 1.22959 1.18075 0.85198 0.90751 0.97902 1.19214 0.89378 0.96817 1.20349 1.15432 0.85075 0.82991 0.78811 1.90811 1.25183 1.70575 1.51506 1.46452 1.03632 1.20310 1.56916 1.19709 1.00084 0.72333 0.94924 1.21196 1.51421 0.90934 0.92561 0.92441 1.24849 0.94809 0.98175 0.95844 1.69936 1.49821 1.16409 1.16845 0.86381 0.77649 0.81130 0.81924 1.19816 1.20808 1.20736 1.15676 0.84949 0.79814 0.79126 1.90990 1.35928 1.58133 1.54756 1.44221 1.05557 1.13858 1.60802 1.21751 0.80763 0.98698 0.98195 1.21494 0.95673 0.97506 0.98601 1.21791 0.99340 0.97096 1.01274 1.21724 0.95103 1.01286 1.01717 0.91926 0.91962 0.92665 0.91050 0.93191 0.90001 0.92883 0.88555 0.87682 0.76408 0.92406 0.92404 0.92607 0.89111 0.88624 0.90634 0.91990 0.93387 0.93017 0.92308 0.92461 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.19 37.16 0.34 -0.85 16 2 C -0.11 -1.11 3.13 -90.62 -0.28 -1.39 16 3 C -0.15 -2.26 7.57 37.16 0.28 -1.98 16 4 C 0.11 1.09 5.33 -4.04 -0.02 1.06 16 5 N -0.41 -5.14 2.66 -115.75 -0.31 -5.44 16 6 C 0.24 2.49 12.49 -90.35 -1.13 1.37 16 7 N -0.50 -6.68 10.29 -13.38 -0.14 -6.82 16 8 C 0.31 5.11 5.87 -154.55 -0.91 4.20 16 9 C -0.14 -2.41 5.51 -83.70 -0.46 -2.87 16 10 C 0.58 12.47 6.46 -15.08 -0.10 12.37 16 11 O -0.51 -11.46 12.48 5.10 0.06 -11.40 16 12 N -0.53 -12.50 2.54 -125.46 -0.32 -12.82 16 13 C 0.25 6.73 4.82 -5.20 -0.03 6.70 16 14 C -0.52 -15.26 9.38 -34.44 -0.32 -15.58 16 15 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 16 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 17 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 18 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.70 15.45 8.11 -87.36 -0.71 14.74 16 23 O -0.53 -12.86 15.26 5.28 0.08 -12.78 16 24 N -0.52 -9.18 2.53 -120.87 -0.31 -9.48 16 25 C 0.13 1.85 4.86 -4.04 -0.02 1.83 16 26 C -0.11 -1.46 3.13 -90.62 -0.28 -1.74 16 27 C -0.14 -1.66 8.33 37.16 0.31 -1.35 16 28 C -0.14 -1.42 9.19 37.16 0.34 -1.08 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.43 6.47 -51.93 -0.34 1.09 16 35 H 0.05 0.96 5.49 -51.93 -0.29 0.67 16 36 H 0.10 0.58 8.13 -51.93 -0.42 0.15 16 37 H 0.10 1.27 7.49 -51.93 -0.39 0.88 16 38 H 0.22 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.06 1.68 7.34 -51.93 -0.38 1.30 16 40 H 0.06 1.66 7.39 -51.93 -0.38 1.28 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.09 1.16 8.01 -51.93 -0.42 0.75 16 43 H 0.10 1.45 7.38 -51.93 -0.38 1.07 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.73 6.09 -51.93 -0.32 0.41 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 396.27 15.07 5.97 5.97 Total: -1.00 -34.36 396.27 -10.25 -44.61 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.93 Total: -0.43 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: -3.08 Total: 17.25 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.33 Total: -60.53 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.14 Total: -24.18 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.36 -10.25 -44.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040461229.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.858 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds