Wall clock time and date at job start Tue Mar 31 2020 06:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30844 * 125.89476 * 2 1 4 4 N 1.40083 * 108.20198 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03812 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46848 * 90.02225 * 5 4 3 7 7 H 1.08002 * 120.00148 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99807 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99995 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00015 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.46895 * 89.99715 * 10 8 6 12 12 H 1.48495 * 109.46979 * 209.99882 * 10 8 6 13 13 H 1.48498 * 109.47261 * 330.00309 * 10 8 6 14 14 C 1.34951 * 107.92726 * 359.97438 * 4 3 2 15 15 C 1.50700 * 126.12824 * 180.02562 * 14 4 3 16 16 C 1.35320 * 107.74569 * 0.02562 * 14 4 3 17 17 C 1.50697 * 126.04023 * 180.02562 * 16 14 4 18 18 C 1.52997 * 109.46925 * 270.00016 * 17 16 14 19 19 C 1.50707 * 109.46923 * 180.02562 * 18 17 16 20 20 O 1.21281 * 120.00190 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00008 * 179.97438 * 19 18 17 22 22 C 1.47154 * 120.98175 * 359.71742 * 21 19 18 23 23 C 1.52885 * 108.60831 * 230.50249 * 22 21 19 24 24 H 1.09003 * 109.36530 * 67.81474 * 23 22 21 25 25 C 1.52995 * 109.58060 * 187.92240 * 23 22 21 26 26 O 1.42962 * 109.29493 * 307.93532 * 23 22 21 27 27 C 1.42964 * 114.16948 * 62.44672 * 26 23 22 28 28 H 1.08998 * 109.54724 * 57.36662 * 27 26 23 29 29 C 1.52992 * 109.51174 * 177.49500 * 27 26 23 30 30 C 1.47146 * 120.98454 * 179.97438 * 21 19 18 31 31 H 1.09006 * 109.47315 * 89.97776 * 1 2 3 32 32 H 1.08994 * 109.47486 * 209.97447 * 1 2 3 33 33 H 1.09006 * 109.47537 * 329.97908 * 1 2 3 34 34 H 1.08994 * 109.47314 * 210.02353 * 5 4 3 35 35 H 1.08998 * 109.46715 * 330.02835 * 5 4 3 36 36 H 0.96995 * 119.99676 * 179.97438 * 9 8 6 37 37 H 1.08997 * 109.46919 * 269.94708 * 15 14 4 38 38 H 1.09001 * 109.46951 * 29.94215 * 15 14 4 39 39 H 1.08996 * 109.47302 * 149.94752 * 15 14 4 40 40 H 1.09007 * 109.46911 * 29.99328 * 17 16 14 41 41 H 1.08997 * 109.47417 * 149.99511 * 17 16 14 42 42 H 1.08998 * 109.46983 * 299.99520 * 18 17 16 43 43 H 1.08991 * 109.47766 * 59.99880 * 18 17 16 44 44 H 1.09006 * 109.68135 * 350.27968 * 22 21 19 45 45 H 1.09000 * 109.68350 * 110.82970 * 22 21 19 46 46 H 1.09005 * 109.46824 * 179.87998 * 25 23 22 47 47 H 1.09003 * 109.47366 * 299.87960 * 25 23 22 48 48 H 1.08996 * 109.47531 * 59.88155 * 25 23 22 49 49 H 1.09003 * 109.47050 * 179.74525 * 29 27 26 50 50 H 1.09007 * 109.47419 * 299.74813 * 29 27 26 51 51 H 1.09001 * 109.47243 * 59.75018 * 29 27 26 52 52 H 1.08998 * 109.68478 * 249.16658 * 30 21 19 53 53 H 1.09000 * 109.68149 * 9.68516 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0013 6 6 5.1958 1.7978 1.4192 7 1 4.6308 1.3822 2.2405 8 6 6.2887 2.6002 1.6705 9 7 6.6433 2.8589 2.9103 10 14 7.2655 3.3197 0.2501 11 1 6.6954 4.6387 -0.1247 12 1 8.6823 3.4912 0.6604 13 1 7.1951 2.4011 -0.9146 14 6 3.6142 -0.7153 -0.0004 15 6 4.8350 -1.5988 -0.0003 16 6 2.3271 -1.1330 -0.0002 17 6 1.8599 -2.5657 0.0006 18 6 1.7019 -3.0514 -1.4417 19 6 1.2341 -4.4840 -1.4409 20 8 1.0461 -5.0600 -0.3902 21 7 1.0247 -5.1252 -2.6077 22 6 1.2401 -4.4453 -3.8949 23 6 -0.0008 -4.6444 -4.7654 24 1 -0.8390 -4.1007 -4.3297 25 6 0.2728 -4.1189 -6.1760 26 8 -0.3157 -6.0376 -4.8275 27 6 -0.6452 -6.6200 -3.5642 28 1 -1.4861 -6.0842 -3.1238 29 6 -1.0225 -8.0895 -3.7618 30 6 0.5685 -6.5239 -2.6322 31 1 -0.3634 0.0004 -1.0277 32 1 -0.3634 -0.8901 0.5134 33 1 -0.3634 0.8898 0.5142 34 1 5.6089 0.9985 -0.5158 35 1 4.5558 2.4335 -0.5148 36 1 7.4123 3.4230 3.0870 37 1 5.1287 -1.8127 -1.0279 38 1 5.6515 -1.0903 0.5125 39 1 4.6079 -2.5323 0.5145 40 1 2.5935 -3.1868 0.5148 41 1 0.9011 -2.6350 0.5144 42 1 0.9684 -2.4304 -1.9559 43 1 2.6606 -2.9822 -1.9555 44 1 1.4012 -3.3806 -3.7253 45 1 2.1088 -4.8733 -4.3953 46 1 -0.6123 -4.2637 -6.7956 47 1 0.5128 -3.0568 -6.1279 48 1 1.1126 -4.6619 -6.6096 49 1 -1.2693 -8.5341 -2.7977 50 1 -1.8853 -8.1572 -4.4247 51 1 -0.1819 -8.6242 -4.2040 52 1 1.3684 -7.1645 -3.0035 53 1 0.2856 -6.8354 -1.6267 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040494366.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:40 Heat of formation + Delta-G solvation = -45.370757 kcal Electronic energy + Delta-G solvation = -31405.053241 eV Core-core repulsion = 27276.927558 eV Total energy + Delta-G solvation = -4128.125682 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 349.215 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.20777 -41.43429 -39.59379 -36.12373 -35.84790 -35.07886 -34.62971 -34.24461 -32.05041 -31.26221 -30.74855 -28.72409 -27.79246 -27.64791 -26.88668 -24.88425 -23.58306 -22.91489 -22.09746 -20.40068 -20.22962 -20.04769 -19.25310 -18.25321 -17.81906 -17.30021 -17.08426 -16.83885 -16.36195 -16.28109 -15.78404 -15.31110 -15.22147 -15.02472 -14.84162 -14.50115 -14.46378 -14.09363 -14.00868 -13.91611 -13.65695 -13.51360 -13.45028 -13.34493 -13.26895 -13.06273 -12.98677 -12.84016 -12.83503 -12.68200 -12.59731 -12.49222 -12.45078 -12.00597 -11.96278 -11.88675 -11.82147 -11.69283 -11.20901 -11.12010 -10.92439 -10.79197 -9.83473 -9.59499 -9.02762 -8.42998 -6.54280 1.13591 1.31760 1.35058 1.44327 1.57875 1.75749 1.89889 2.00017 2.24088 2.63827 2.89291 3.47198 3.63052 3.81942 3.88666 3.90556 3.98617 4.05559 4.09638 4.18410 4.20290 4.27950 4.34403 4.41402 4.46946 4.52362 4.58553 4.61965 4.67364 4.69565 4.72583 4.74444 4.76233 4.83023 4.85284 4.89689 4.96077 5.00288 5.01755 5.07013 5.12349 5.21358 5.22098 5.28671 5.34699 5.38879 5.40557 5.50189 5.91496 6.05455 6.20408 6.27992 6.40966 6.50805 7.05749 7.10237 7.10617 8.73825 Molecular weight = 349.22amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.002155 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.237568 B =12991.185178 C =13234.145733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.057 3.943 3 N -0.346 5.346 4 N -0.355 5.355 5 C 0.242 3.758 6 C -0.551 4.551 7 H 0.020 0.980 8 C 0.018 3.982 9 N -0.938 5.938 10 Si 0.954 3.046 11 H -0.266 1.266 12 H -0.274 1.274 13 H -0.233 1.233 14 C 0.082 3.918 15 C -0.090 4.090 16 C -0.257 4.257 17 C -0.004 4.004 18 C -0.121 4.121 19 C 0.518 3.482 20 O -0.578 6.578 21 N -0.620 5.620 22 C 0.074 3.926 23 C 0.071 3.929 24 H 0.062 0.938 25 C -0.140 4.140 26 O -0.387 6.387 27 C 0.078 3.922 28 H 0.057 0.943 29 C -0.140 4.140 30 C 0.080 3.920 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.273 0.727 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.086 0.914 46 H 0.066 0.934 47 H 0.092 0.908 48 H 0.067 0.933 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.068 0.932 52 H 0.079 0.921 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.173 -19.822 -21.386 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.108 4.108 3 N -0.170 5.170 4 N -0.135 5.135 5 C 0.121 3.879 6 C -0.589 4.589 7 H 0.038 0.962 8 C -0.181 4.181 9 N -0.576 5.576 10 Si 0.774 3.226 11 H -0.191 1.191 12 H -0.199 1.199 13 H -0.156 1.156 14 C -0.047 4.047 15 C -0.148 4.148 16 C -0.268 4.268 17 C -0.043 4.043 18 C -0.161 4.161 19 C 0.309 3.691 20 O -0.457 6.457 21 N -0.353 5.353 22 C -0.048 4.048 23 C 0.013 3.987 24 H 0.080 0.920 25 C -0.198 4.198 26 O -0.307 6.307 27 C 0.019 3.981 28 H 0.075 0.925 29 C -0.197 4.197 30 C -0.042 4.042 31 H 0.114 0.886 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.132 0.868 45 H 0.104 0.896 46 H 0.085 0.915 47 H 0.110 0.890 48 H 0.086 0.914 49 H 0.104 0.896 50 H 0.089 0.911 51 H 0.087 0.913 52 H 0.098 0.902 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.959 -18.746 -20.883 30.911 hybrid contribution 0.654 0.132 0.765 1.015 sum -12.305 -18.615 -20.118 30.044 Atomic orbital electron populations 1.20220 0.84749 1.03329 1.03944 1.22763 0.98110 0.90166 0.99773 1.77211 0.87680 1.24838 1.27232 1.48675 1.05126 1.04970 1.54691 1.19673 0.80930 0.90581 0.96683 1.21265 1.13734 1.32601 0.91275 0.96190 1.25896 0.97703 0.95372 0.99162 1.70043 1.27818 1.38091 1.21673 0.85642 0.77820 0.79919 0.79189 1.19091 1.19863 1.15592 1.21446 0.98220 0.84594 1.00456 1.20528 0.92345 0.97688 1.04278 1.19676 0.90504 0.96356 1.20289 1.19363 1.01217 0.88538 0.95225 1.21654 1.04254 0.90742 0.99452 1.21176 0.75976 0.89452 0.82543 1.90681 1.53401 1.69414 1.32240 1.48305 1.67236 1.13327 1.06453 1.22649 0.99247 1.00025 0.82902 1.22524 0.95874 0.82329 0.98013 0.91988 1.21745 1.03109 1.01985 0.92943 1.87965 1.89079 1.23748 1.29934 1.22489 0.94973 0.96602 0.84018 0.92506 1.21729 1.02732 0.91702 1.03546 1.22376 0.97681 0.82470 1.01706 0.88626 0.89329 0.91798 0.91247 0.93805 0.91743 0.87930 0.92189 0.88779 0.92003 0.91326 0.87111 0.87468 0.86780 0.89550 0.91459 0.88969 0.91393 0.89631 0.91062 0.91325 0.90241 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.63 10.26 71.23 0.73 -0.90 16 2 C 0.06 2.05 7.22 43.10 0.31 2.36 16 3 N -0.35 -15.58 12.58 -47.39 -0.60 -16.18 16 4 N -0.35 -16.08 3.60 -338.40 -1.22 -17.30 16 5 C 0.24 11.53 4.89 85.63 0.42 11.95 16 6 C -0.55 -32.02 9.94 25.60 0.25 -31.77 16 7 H 0.02 1.35 8.06 -2.91 -0.02 1.33 16 8 C 0.02 1.04 5.47 84.66 0.46 1.50 16 9 N -0.94 -57.76 13.96 21.45 0.30 -57.46 16 10 Si 0.95 41.12 27.47 68.60 1.88 43.00 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 H -0.23 -8.80 6.54 99.48 0.65 -8.15 16 14 C 0.08 3.10 6.93 41.41 0.29 3.39 16 15 C -0.09 -2.74 9.69 71.24 0.69 -2.05 16 16 C -0.26 -8.57 5.35 -20.14 -0.11 -8.67 16 17 C 0.00 -0.12 4.59 29.85 0.14 0.02 16 18 C -0.12 -2.35 4.06 29.85 0.12 -2.23 16 19 C 0.52 11.47 7.71 87.66 0.68 12.15 16 20 O -0.58 -17.39 15.45 -3.03 -0.05 -17.44 16 21 N -0.62 -10.74 3.02 -818.06 -2.47 -13.21 16 22 C 0.07 0.87 5.81 86.22 0.50 1.37 16 23 C 0.07 0.83 3.39 30.55 0.10 0.93 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 C -0.14 -1.12 9.57 71.98 0.69 -0.43 16 26 O -0.39 -5.94 10.03 -148.98 -1.49 -7.43 16 27 C 0.08 1.09 3.40 30.70 0.10 1.19 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 C -0.14 -1.39 9.57 71.98 0.69 -0.70 16 30 C 0.08 1.31 5.93 86.37 0.51 1.83 16 31 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.09 1.93 7.25 -2.39 -0.02 1.92 16 33 H 0.06 1.68 8.14 -2.38 -0.02 1.67 16 34 H 0.07 2.96 6.72 -2.39 -0.02 2.94 16 35 H 0.04 2.07 7.57 -2.39 -0.02 2.06 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.06 2.10 7.72 -2.39 -0.02 2.08 16 39 H 0.09 2.50 7.15 -2.39 -0.02 2.48 16 40 H 0.06 1.74 7.11 -2.38 -0.02 1.73 16 41 H 0.07 1.85 7.21 -2.39 -0.02 1.83 16 42 H 0.11 1.75 7.64 -2.39 -0.02 1.73 16 43 H 0.11 1.79 8.03 -2.39 -0.02 1.77 16 44 H 0.11 1.00 6.05 -2.38 -0.01 0.98 16 45 H 0.09 0.92 8.13 -2.39 -0.02 0.90 16 46 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 47 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 49 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 51 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 53 H 0.09 1.69 7.08 -2.39 -0.02 1.67 16 Total: -1.00 -79.05 422.34 3.76 -75.29 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.83 Total: 20.80 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 6.58 Total: -10.07 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -3.99 Total: -104.15 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.54 Total: -24.87 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.88 Total: 43.00 kcal Total: -79.05 3.76 -75.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040494366.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.915 kcal (2) G-P(sol) polarization free energy of solvation -79.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds