Wall clock time and date at job start Tue Mar 31 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86803 * 119.99996 * 2 1 4 4 H 1.48502 * 109.47107 * 270.00059 * 3 2 1 5 5 H 1.48503 * 109.47114 * 30.00360 * 3 2 1 6 6 H 1.48500 * 109.46923 * 149.99745 * 3 2 1 7 7 C 1.39019 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99691 * 167.40821 * 7 2 1 9 9 N 1.36853 * 120.00061 * 347.41732 * 7 2 1 10 10 C 1.46499 * 119.99675 * 317.21068 * 9 7 2 11 11 C 1.50700 * 109.47269 * 264.49567 * 10 9 7 12 12 C 1.38232 * 120.00581 * 270.87470 * 11 10 9 13 13 C 1.38233 * 120.00400 * 179.76277 * 12 11 10 14 14 C 1.38232 * 119.99776 * 0.51132 * 13 12 11 15 15 C 1.38236 * 120.00105 * 359.73738 * 14 13 12 16 16 C 1.38229 * 120.00183 * 0.02562 * 15 14 13 17 17 C 1.34774 * 120.00080 * 137.21576 * 9 7 2 18 18 O 1.21759 * 119.99994 * 182.88212 * 17 9 7 19 19 C 1.46412 * 120.00302 * 2.88284 * 17 9 7 20 20 C 1.36722 * 125.98795 * 174.43010 * 19 17 9 21 21 C 1.40240 * 106.72776 * 179.97438 * 20 19 17 22 22 C 1.35351 * 107.12768 * 0.02562 * 21 20 19 23 23 Br 1.89101 * 125.62501 * 179.97438 * 22 21 20 24 24 O 1.33985 * 108.75288 * 359.97438 * 22 21 20 25 25 H 0.96997 * 119.99958 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47200 * 24.49587 * 10 9 7 27 27 H 1.09000 * 109.47312 * 144.50255 * 10 9 7 28 28 H 1.08007 * 119.99473 * 0.02562 * 12 11 10 29 29 H 1.07995 * 120.00235 * 180.22917 * 13 12 11 30 30 H 1.08000 * 120.00473 * 179.72682 * 14 13 12 31 31 H 1.08004 * 120.00319 * 179.97438 * 15 14 13 32 32 H 1.08004 * 120.00699 * 179.97438 * 16 15 14 33 33 H 1.07994 * 126.63599 * 0.24513 * 20 19 17 34 34 H 1.07996 * 126.44142 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4954 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5454 1.4402 0.7001 7 6 2.0090 -1.2039 0.0005 8 1 3.0696 -1.2152 -0.2034 9 7 1.3494 -2.3748 0.2593 10 6 0.3623 -2.4360 1.3401 11 6 1.0188 -2.9610 2.5908 12 6 1.0536 -4.3212 2.8346 13 6 1.6601 -4.8030 3.9795 14 6 2.2226 -3.9239 4.8859 15 6 2.1833 -2.5633 4.6448 16 6 1.5811 -2.0818 3.4975 17 6 1.6080 -3.4715 -0.4802 18 8 0.9839 -4.4985 -0.2848 19 6 2.6394 -3.4280 -1.5184 20 6 3.0750 -4.4887 -2.2631 21 6 4.0617 -3.9957 -3.1292 22 6 4.1857 -2.6713 -2.8794 23 35 5.3754 -1.4917 -3.7565 24 8 3.3266 -2.3337 -1.9083 25 1 -0.4850 0.8400 0.0004 26 1 -0.0324 -1.4377 1.5285 27 1 -0.4521 -3.1003 1.0511 28 1 0.6105 -5.0078 2.1283 29 1 1.6905 -5.8659 4.1680 30 1 2.6926 -4.3000 5.7826 31 1 2.6224 -1.8764 5.3532 32 1 1.5501 -1.0187 3.3092 33 1 2.7237 -5.5080 -2.1999 34 1 4.6180 -4.5658 -3.8585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044350141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:09 Heat of formation + Delta-G solvation = 21.793635 kcal Electronic energy + Delta-G solvation = -22373.837447 eV Core-core repulsion = 18899.280581 eV Total energy + Delta-G solvation = -3474.556866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 349.010 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.06319 -39.10098 -37.89502 -35.13080 -32.72071 -32.06669 -31.65915 -30.89764 -30.33161 -28.41722 -25.94829 -24.81443 -22.04121 -21.96606 -21.27029 -20.55752 -19.41020 -18.27306 -16.55133 -15.88981 -15.79800 -15.57187 -14.91386 -14.67957 -14.45347 -14.33553 -13.63381 -13.24539 -12.85959 -12.67618 -12.53932 -12.41755 -12.26184 -12.07865 -11.58962 -11.32052 -11.10303 -11.02364 -10.91132 -10.54478 -10.47095 -10.35660 -10.24925 -9.54644 -9.38765 -8.97948 -8.37566 -8.19397 -8.07913 -7.67576 -6.56709 -4.30533 1.19382 1.60891 1.87903 1.95343 2.68080 3.06630 3.13826 3.17391 3.73814 3.97648 4.12733 4.28170 4.72991 4.88241 5.27001 5.38711 5.42697 5.53033 5.69328 5.80486 5.91830 6.04551 6.12001 6.14913 6.22340 6.41686 6.55041 6.68634 6.71826 6.98401 6.99515 7.04606 7.31116 7.34809 7.37909 7.56605 7.69117 8.19680 8.84787 9.17491 9.60744 10.45426 Molecular weight = 349.01amu Principal moments of inertia in cm(-1) A = 0.011940 B = 0.004526 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.486119 B = 6185.284931 C = 7334.237011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.052 3.948 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.333 4.333 8 H 0.100 0.900 9 N -0.406 5.406 10 C 0.150 3.850 11 C -0.084 4.084 12 C -0.101 4.101 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.132 4.132 16 C -0.097 4.097 17 C 0.535 3.465 18 O -0.580 6.580 19 C 0.018 3.982 20 C -0.174 4.174 21 C -0.165 4.165 22 C -0.043 4.043 23 Br 0.031 6.969 24 O -0.109 6.109 25 H 0.275 0.725 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.158 0.842 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.713 -2.300 -1.290 8.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.156 4.156 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.461 4.461 8 H 0.117 0.883 9 N -0.121 5.121 10 C 0.028 3.972 11 C -0.086 4.086 12 C -0.120 4.120 13 C -0.150 4.150 14 C -0.150 4.150 15 C -0.150 4.150 16 C -0.115 4.115 17 C 0.324 3.676 18 O -0.467 6.467 19 C -0.038 4.038 20 C -0.195 4.195 21 C -0.187 4.187 22 C -0.174 4.174 23 Br 0.115 6.885 24 O -0.003 6.003 25 H 0.085 0.915 26 H 0.134 0.866 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.176 0.824 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.597 -1.857 -1.360 7.938 hybrid contribution 0.347 0.586 -0.017 0.681 sum 7.944 -1.271 -1.377 8.162 Atomic orbital electron populations 1.69833 1.06233 1.28403 1.44572 1.25471 0.95232 1.00029 0.94851 0.86113 0.79874 0.80922 0.79184 1.19641 1.20403 1.18863 1.19642 0.93711 0.83198 1.49567 0.88310 1.43343 1.35275 1.08670 1.24855 1.20487 0.90249 1.03756 0.82750 1.20578 0.98242 0.93331 0.96415 1.21328 0.98517 0.95541 0.96593 1.21067 0.99723 0.99052 0.95184 1.20996 1.01033 0.93657 0.99346 1.21050 1.00799 0.95333 0.97853 1.21129 0.96950 0.99961 0.93481 1.16996 0.83531 0.85793 0.81304 1.90709 1.52220 1.32601 1.71161 1.22728 0.96879 0.84081 1.00118 1.21754 0.99509 1.00200 0.98073 1.21480 1.01846 0.92215 1.03145 1.24161 0.99967 0.94167 0.99060 1.96723 1.54829 1.63756 1.73239 1.84734 1.39699 1.35004 1.40864 0.91500 0.86577 0.91284 0.85459 0.86866 0.87039 0.86828 0.86078 0.82409 0.82819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.48 11.39 55.50 0.63 -20.85 16 2 C 0.05 1.26 5.08 -17.45 -0.09 1.17 16 3 Si 0.91 19.11 29.57 -169.99 -5.03 14.09 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.33 -8.30 7.88 -15.02 -0.12 -8.42 16 8 H 0.10 2.49 6.05 -52.48 -0.32 2.17 16 9 N -0.41 -9.99 2.48 -117.68 -0.29 -10.29 16 10 C 0.15 3.43 5.00 -5.19 -0.03 3.41 16 11 C -0.08 -1.73 5.42 -104.62 -0.57 -2.30 16 12 C -0.10 -1.95 9.43 -39.59 -0.37 -2.32 16 13 C -0.13 -2.18 10.05 -39.59 -0.40 -2.58 16 14 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 15 C -0.13 -2.15 10.05 -39.59 -0.40 -2.55 16 16 C -0.10 -1.82 9.70 -39.58 -0.38 -2.20 16 17 C 0.54 13.12 7.55 -12.97 -0.10 13.02 16 18 O -0.58 -14.62 15.36 5.14 0.08 -14.54 16 19 C 0.02 0.40 6.81 -36.84 -0.25 0.15 16 20 C -0.17 -3.27 10.62 -39.38 -0.42 -3.68 16 21 C -0.16 -2.71 10.82 -39.86 -0.43 -3.14 16 22 C -0.04 -0.78 7.80 29.70 0.23 -0.55 16 23 Br 0.03 0.45 34.09 -68.01 -2.32 -1.87 16 24 O -0.11 -2.39 7.57 4.69 0.04 -2.35 16 25 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 26 H 0.12 2.77 5.61 -51.93 -0.29 2.47 16 27 H 0.07 1.61 7.50 -51.93 -0.39 1.22 16 28 H 0.13 2.54 7.17 -52.48 -0.38 2.16 16 29 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 33 H 0.16 2.70 8.06 -52.49 -0.42 2.27 16 34 H 0.15 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 321.02 15.07 4.84 4.84 Total: -1.00 -27.17 321.02 -8.82 -35.99 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -3.05 Total: 7.40 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -3.72 Total: -12.41 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.34 Total: -31.14 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: 0.11 Total: -16.89 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.09 kcal Atomic # 35 Polarization: 0.45 SS G_CDS: -2.32 Total: -1.87 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.17 -8.82 -35.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044350141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.780 kcal (2) G-P(sol) polarization free energy of solvation -27.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds