Wall clock time and date at job start Tue Mar 31 2020 05:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86803 * 119.99996 * 2 1 4 4 H 1.48502 * 109.47107 * 270.00059 * 3 2 1 5 5 H 1.48503 * 109.47114 * 30.00360 * 3 2 1 6 6 H 1.48500 * 109.46923 * 149.99745 * 3 2 1 7 7 C 1.39019 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99691 * 167.40821 * 7 2 1 9 9 N 1.36853 * 120.00061 * 347.41732 * 7 2 1 10 10 C 1.46499 * 119.99675 * 317.21068 * 9 7 2 11 11 C 1.50700 * 109.47269 * 264.49567 * 10 9 7 12 12 C 1.38232 * 120.00581 * 270.87470 * 11 10 9 13 13 C 1.38233 * 120.00400 * 179.76277 * 12 11 10 14 14 C 1.38232 * 119.99776 * 0.51132 * 13 12 11 15 15 C 1.38236 * 120.00105 * 359.73738 * 14 13 12 16 16 C 1.38229 * 120.00183 * 0.02562 * 15 14 13 17 17 C 1.34774 * 120.00080 * 137.21576 * 9 7 2 18 18 O 1.21759 * 119.99994 * 182.88212 * 17 9 7 19 19 C 1.46412 * 120.00302 * 2.88284 * 17 9 7 20 20 C 1.36722 * 125.98795 * 174.43010 * 19 17 9 21 21 C 1.40240 * 106.72776 * 179.97438 * 20 19 17 22 22 C 1.35351 * 107.12768 * 0.02562 * 21 20 19 23 23 Br 1.89101 * 125.62501 * 179.97438 * 22 21 20 24 24 O 1.33985 * 108.75288 * 359.97438 * 22 21 20 25 25 H 0.96997 * 119.99958 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47200 * 24.49587 * 10 9 7 27 27 H 1.09000 * 109.47312 * 144.50255 * 10 9 7 28 28 H 1.08007 * 119.99473 * 0.02562 * 12 11 10 29 29 H 1.07995 * 120.00235 * 180.22917 * 13 12 11 30 30 H 1.08000 * 120.00473 * 179.72682 * 14 13 12 31 31 H 1.08004 * 120.00319 * 179.97438 * 15 14 13 32 32 H 1.08004 * 120.00699 * 179.97438 * 16 15 14 33 33 H 1.07994 * 126.63599 * 0.24513 * 20 19 17 34 34 H 1.07996 * 126.44142 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4954 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5454 1.4402 0.7001 7 6 2.0090 -1.2039 0.0005 8 1 3.0696 -1.2152 -0.2034 9 7 1.3494 -2.3748 0.2593 10 6 0.3623 -2.4360 1.3401 11 6 1.0188 -2.9610 2.5908 12 6 1.0536 -4.3212 2.8346 13 6 1.6601 -4.8030 3.9795 14 6 2.2226 -3.9239 4.8859 15 6 2.1833 -2.5633 4.6448 16 6 1.5811 -2.0818 3.4975 17 6 1.6080 -3.4715 -0.4802 18 8 0.9839 -4.4985 -0.2848 19 6 2.6394 -3.4280 -1.5184 20 6 3.0750 -4.4887 -2.2631 21 6 4.0617 -3.9957 -3.1292 22 6 4.1857 -2.6713 -2.8794 23 35 5.3754 -1.4917 -3.7565 24 8 3.3266 -2.3337 -1.9083 25 1 -0.4850 0.8400 0.0004 26 1 -0.0324 -1.4377 1.5285 27 1 -0.4521 -3.1003 1.0511 28 1 0.6105 -5.0078 2.1283 29 1 1.6905 -5.8659 4.1680 30 1 2.6926 -4.3000 5.7826 31 1 2.6224 -1.8764 5.3532 32 1 1.5501 -1.0187 3.3092 33 1 2.7237 -5.5080 -2.1999 34 1 4.6180 -4.5658 -3.8585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044350141.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:08 Heat of formation + Delta-G solvation = 8.950532 kcal Electronic energy + Delta-G solvation = -22374.394366 eV Core-core repulsion = 18899.280581 eV Total energy + Delta-G solvation = -3475.113785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 349.010 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.59811 -40.74240 -39.47903 -36.95698 -34.21618 -33.81794 -33.09750 -32.46121 -31.70477 -29.92241 -27.65986 -26.58842 -23.60832 -23.35715 -22.74737 -22.05244 -21.13058 -19.98239 -18.14287 -17.44569 -17.36083 -17.20459 -16.70462 -16.30714 -16.00679 -15.78482 -15.29397 -14.92356 -14.24203 -14.12792 -14.00953 -13.88108 -13.82270 -13.61970 -13.24751 -13.05578 -12.84929 -12.57087 -12.31943 -12.14607 -11.93029 -11.76971 -11.68176 -11.24054 -10.99850 -10.81988 -9.75761 -9.70200 -9.61740 -9.42163 -8.41514 -6.22442 -0.17857 0.02453 0.48143 0.56999 1.22728 1.40773 1.41256 1.52296 2.13872 2.27140 2.34774 2.74971 3.06079 3.15691 3.90425 3.99829 4.09544 4.14597 4.23926 4.36444 4.44527 4.49625 4.65223 4.72737 4.80254 4.87594 5.11432 5.19971 5.25520 5.30131 5.43022 5.63763 5.64543 5.79243 5.82691 5.93154 6.19910 6.31175 6.96811 7.32509 7.75605 8.61575 Molecular weight = 349.01amu Principal moments of inertia in cm(-1) A = 0.011940 B = 0.004526 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.486119 B = 6185.284931 C = 7334.237011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.016 3.984 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.344 4.344 8 H 0.093 0.907 9 N -0.417 5.417 10 C 0.157 3.843 11 C -0.107 4.107 12 C -0.120 4.120 13 C -0.129 4.129 14 C -0.121 4.121 15 C -0.126 4.126 16 C -0.113 4.113 17 C 0.523 3.477 18 O -0.602 6.602 19 C -0.031 4.031 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.052 4.052 23 Br 0.067 6.933 24 O -0.135 6.135 25 H 0.277 0.723 26 H 0.101 0.899 27 H 0.046 0.954 28 H 0.108 0.892 29 H 0.143 0.857 30 H 0.155 0.845 31 H 0.147 0.853 32 H 0.112 0.888 33 H 0.173 0.827 34 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.299 -2.545 -0.774 10.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.471 4.471 8 H 0.110 0.890 9 N -0.132 5.132 10 C 0.035 3.965 11 C -0.109 4.109 12 C -0.139 4.139 13 C -0.147 4.147 14 C -0.139 4.139 15 C -0.144 4.144 16 C -0.132 4.132 17 C 0.313 3.687 18 O -0.491 6.491 19 C -0.086 4.086 20 C -0.176 4.176 21 C -0.171 4.171 22 C -0.182 4.182 23 Br 0.150 6.850 24 O -0.030 6.030 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.065 0.935 28 H 0.126 0.874 29 H 0.160 0.840 30 H 0.173 0.827 31 H 0.165 0.835 32 H 0.130 0.870 33 H 0.190 0.810 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 10.182 -2.104 -0.838 10.431 hybrid contribution -0.362 0.592 -0.252 0.738 sum 9.820 -1.512 -1.090 9.995 Atomic orbital electron populations 1.69928 1.07471 1.29185 1.45590 1.26188 0.95837 1.02565 0.94232 0.85262 0.78970 0.77355 0.79078 1.19624 1.19532 1.18240 1.19697 0.93525 0.83662 1.50263 0.88983 1.43529 1.35429 1.08836 1.25409 1.20300 0.89941 1.02294 0.83973 1.20401 1.00045 0.94369 0.96040 1.21262 1.00018 0.94684 0.97903 1.21403 0.98370 1.00952 0.93934 1.21474 0.99393 0.92950 1.00040 1.21422 0.99372 0.96631 0.96964 1.21160 0.98065 0.99349 0.94627 1.17389 0.84069 0.85516 0.81724 1.90658 1.53346 1.33063 1.72068 1.22482 0.98704 0.85591 1.01868 1.22101 0.98730 1.00022 0.96744 1.21917 1.00739 0.91643 1.02751 1.24892 0.99389 0.95934 0.97959 1.96754 1.53138 1.63049 1.72058 1.84647 1.40702 1.35326 1.42309 0.91280 0.88155 0.93533 0.87397 0.83953 0.82748 0.83517 0.86989 0.80951 0.78467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.46 11.39 21.68 0.25 -46.21 16 2 C 0.02 0.82 5.08 84.95 0.43 1.25 16 3 Si 0.97 39.60 29.57 68.60 2.03 41.63 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.34 -17.84 7.88 84.10 0.66 -17.18 16 8 H 0.09 4.82 6.05 -2.91 -0.02 4.80 16 9 N -0.42 -21.75 2.48 -644.41 -1.60 -23.35 16 10 C 0.16 7.76 5.00 85.63 0.43 8.19 16 11 C -0.11 -4.62 5.42 -19.86 -0.11 -4.73 16 12 C -0.12 -4.75 9.43 22.27 0.21 -4.55 16 13 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 14 C -0.12 -3.31 10.05 22.27 0.22 -3.08 16 15 C -0.13 -3.81 10.05 22.27 0.22 -3.58 16 16 C -0.11 -4.33 9.70 22.27 0.22 -4.11 16 17 C 0.52 27.04 7.55 86.37 0.65 27.69 16 18 O -0.60 -32.14 15.36 -4.54 -0.07 -32.21 16 19 C -0.03 -1.44 6.81 24.04 0.16 -1.27 16 20 C -0.15 -5.68 10.62 22.40 0.24 -5.44 16 21 C -0.15 -4.54 10.82 22.09 0.24 -4.30 16 22 C -0.05 -1.79 7.80 67.15 0.52 -1.27 16 23 Br 0.07 1.80 34.09 -20.37 -0.69 1.10 16 24 O -0.13 -5.95 7.57 -6.13 -0.05 -6.00 16 25 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 26 H 0.10 5.18 5.61 -2.39 -0.01 5.16 16 27 H 0.05 2.40 7.50 -2.39 -0.02 2.38 16 28 H 0.11 4.60 7.17 -2.91 -0.02 4.58 16 29 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 30 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 32 H 0.11 4.37 8.06 -2.91 -0.02 4.34 16 33 H 0.17 5.71 8.06 -2.91 -0.02 5.69 16 34 H 0.20 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -62.37 321.02 5.33 -57.04 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 1.14 Total: 24.18 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 4.33 Total: -16.18 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -1.35 Total: -69.56 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -0.12 Total: -38.21 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Atomic # 35 Polarization: 1.80 SS G_CDS: -0.69 Total: 1.10 kcal Total: -62.37 5.33 -57.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044350141.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.989 kcal (2) G-P(sol) polarization free energy of solvation -62.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds