Wall clock time and date at job start Tue Mar 31 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86807 * 119.99777 * 2 1 4 4 H 1.48496 * 109.47015 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46874 * 300.00104 * 3 2 1 6 6 H 1.48502 * 109.47155 * 59.99553 * 3 2 1 7 7 C 1.39888 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00007 * 195.91839 * 7 2 1 9 9 C 1.41215 * 119.99963 * 15.91735 * 7 2 1 10 10 C 1.40833 * 120.17750 * 24.80875 * 9 7 2 11 11 C 1.36441 * 119.81419 * 180.02562 * 10 9 7 12 12 C 1.39316 * 120.17997 * 359.97438 * 11 10 9 13 13 O 1.35674 * 119.81198 * 179.97438 * 12 11 10 14 14 C 1.42899 * 116.99588 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47166 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.47466 * 54.99476 * 15 14 13 17 17 O 1.42905 * 109.46743 * 294.99976 * 15 14 13 18 18 C 1.53000 * 109.47376 * 174.99956 * 15 14 13 19 19 N 1.46903 * 109.47017 * 175.48139 * 18 15 14 20 20 C 1.46839 * 111.00223 * 52.08239 * 19 18 15 21 21 C 1.53037 * 109.52621 * 185.83798 * 20 19 18 22 22 C 1.53125 * 109.27588 * 300.82084 * 21 20 19 23 23 C 1.50697 * 109.57116 * 177.58860 * 22 21 20 24 24 N 1.34769 * 120.00110 * 60.28765 * 23 22 21 25 25 O 1.21287 * 119.99810 * 240.28488 * 23 22 21 26 26 C 1.53119 * 109.15847 * 57.65501 * 22 21 20 27 27 C 1.46846 * 110.99559 * 176.29446 * 19 18 15 28 28 C 1.39308 * 120.36562 * 0.25389 * 12 11 10 29 29 C 1.36436 * 120.18653 * 359.48492 * 28 12 11 30 30 H 0.96995 * 120.00092 * 0.02562 * 1 2 3 31 31 H 1.08008 * 120.09392 * 359.97438 * 10 9 7 32 32 H 1.07996 * 119.90634 * 179.97438 * 11 10 9 33 33 H 1.08995 * 109.47333 * 60.00171 * 14 13 12 34 34 H 1.09001 * 109.46993 * 300.00040 * 14 13 12 35 35 H 0.96696 * 113.99818 * 299.99368 * 17 15 14 36 36 H 1.09005 * 109.46700 * 295.47823 * 18 15 14 37 37 H 1.08999 * 109.47017 * 55.48097 * 18 15 14 38 38 H 1.09002 * 109.46530 * 305.85700 * 20 19 18 39 39 H 1.09004 * 109.46477 * 65.81950 * 20 19 18 40 40 H 1.08995 * 109.50432 * 180.88350 * 21 20 19 41 41 H 1.09003 * 109.53390 * 60.77893 * 21 20 19 42 42 H 1.08992 * 109.52337 * 297.74916 * 22 21 20 43 43 H 0.97002 * 120.00418 * 359.97438 * 24 23 22 44 44 H 0.97004 * 120.00086 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.50021 * 182.40099 * 26 22 21 46 46 H 1.08999 * 109.53766 * 62.30496 * 26 22 21 47 47 H 1.09002 * 109.46368 * 294.17068 * 27 19 18 48 48 H 1.09001 * 109.46555 * 54.15026 * 27 19 18 49 49 H 1.08004 * 119.90734 * 179.72121 * 28 12 11 50 50 H 1.08003 * 120.10004 * 180.25177 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3465 0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8840 2.3966 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0573 -1.2292 0.2571 9 6 1.3429 -2.4111 -0.3343 10 6 0.1920 -2.3797 -1.1453 11 6 -0.4454 -3.5432 -1.4638 12 6 0.0397 -4.7601 -0.9896 13 8 -0.6003 -5.9125 -1.3105 14 6 -0.0514 -7.1255 -0.7914 15 6 -0.9010 -8.3099 -1.2566 16 1 -0.9773 -8.2976 -2.3438 17 8 -2.2077 -8.2117 -0.6863 18 6 -0.2448 -9.6165 -0.8060 19 7 -1.1139 -10.7475 -1.1575 20 6 -1.4902 -10.7011 -2.5761 21 6 -2.5075 -11.8055 -2.8718 22 6 -1.8904 -13.1652 -2.5325 23 6 -2.9069 -14.2531 -2.7653 24 7 -3.4279 -14.4367 -3.9945 25 8 -3.2561 -14.9634 -1.8463 26 6 -1.4631 -13.1702 -1.0621 27 6 -0.4761 -12.0262 -0.8188 28 6 1.1749 -4.7995 -0.1830 29 6 1.8270 -3.6455 0.1404 30 1 -0.4850 0.8400 -0.0004 31 1 -0.1856 -1.4371 -1.5133 32 1 -1.3284 -3.5208 -2.0852 33 1 -0.0480 -7.0859 0.2978 34 1 0.9695 -7.2466 -1.1537 35 1 -2.2163 -8.2168 0.2806 36 1 0.7183 -9.7299 -1.3038 37 1 -0.0956 -9.5947 0.2735 38 1 -1.9314 -9.7306 -2.8032 39 1 -0.6033 -10.8497 -3.1922 40 1 -2.7747 -11.7807 -3.9282 41 1 -3.4006 -11.6499 -2.2667 42 1 -1.0201 -13.3384 -3.1653 43 1 -3.1489 -13.8684 -4.7295 44 1 -4.0825 -15.1368 -4.1443 45 1 -0.9844 -14.1205 -0.8256 46 1 -2.3391 -13.0362 -0.4275 47 1 0.4060 -12.1687 -1.4432 48 1 -0.1810 -12.0183 0.2304 49 1 1.5419 -5.7465 0.1842 50 1 2.7093 -3.6781 0.7624 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044869298.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:48 Heat of formation + Delta-G solvation = -112.561554 kcal Electronic energy + Delta-G solvation = -29789.872794 eV Core-core repulsion = 25588.426316 eV Total energy + Delta-G solvation = -4201.446477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.188 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.53525 -39.29736 -38.57831 -37.08652 -35.97613 -34.29595 -33.47332 -33.31730 -31.21392 -30.51706 -29.55372 -28.96639 -26.74116 -24.88048 -24.05689 -23.62882 -21.91315 -21.06145 -20.59715 -20.55787 -19.95723 -17.96382 -17.37747 -17.23523 -16.99280 -16.55299 -16.23373 -15.80677 -15.39822 -15.21512 -15.06813 -14.81980 -14.45335 -14.22114 -13.96627 -13.85315 -13.70681 -13.40690 -13.21472 -12.83842 -12.45680 -12.28341 -12.18876 -12.13748 -11.76427 -11.70376 -11.50200 -11.39273 -11.17983 -11.07287 -11.05792 -10.88348 -10.68511 -10.50368 -10.15704 -10.09716 -9.99425 -9.90469 -9.81206 -9.34242 -9.04603 -8.57775 -7.65348 -7.03149 -6.71655 -4.27058 2.25426 2.76024 2.94107 3.08309 3.11474 3.13352 3.19356 3.36186 3.94401 3.98903 4.22513 4.36646 4.43173 4.51196 4.61955 4.79092 4.81438 4.86684 4.93332 5.03701 5.11005 5.13863 5.18576 5.29461 5.32840 5.42537 5.52184 5.58179 5.60117 5.66417 5.72776 5.79000 5.98706 6.01143 6.04775 6.21537 6.35230 6.69260 6.74669 6.79911 6.89467 6.96890 7.10281 7.18233 7.46117 7.54834 7.75062 7.78066 7.86238 7.99932 8.20144 8.44362 8.64675 8.89532 8.97735 10.22386 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.040275 B = 0.001528 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.055160 B =18323.152752 C =18657.660923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.076 0.924 9 C 0.086 3.914 10 C -0.132 4.132 11 C -0.120 4.120 12 C -0.008 4.008 13 O -0.317 6.317 14 C 0.038 3.962 15 C 0.112 3.888 16 H 0.104 0.896 17 O -0.539 6.539 18 C 0.026 3.974 19 N -0.525 5.525 20 C 0.050 3.950 21 C -0.105 4.105 22 C -0.111 4.111 23 C 0.523 3.477 24 N -0.857 5.857 25 O -0.543 6.543 26 C -0.095 4.095 27 C 0.054 3.946 28 C -0.169 4.169 29 C -0.198 4.198 30 H 0.279 0.721 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.374 0.626 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.033 0.967 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.401 0.599 44 H 0.400 0.600 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.033 0.967 48 H 0.079 0.921 49 H 0.092 0.908 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 -23.137 -7.045 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.084 3.916 10 C -0.152 4.152 11 C -0.139 4.139 12 C -0.051 4.051 13 O -0.233 6.233 14 C -0.039 4.039 15 C 0.052 3.948 16 H 0.122 0.878 17 O -0.344 6.344 18 C -0.103 4.103 19 N -0.250 5.250 20 C -0.077 4.077 21 C -0.143 4.143 22 C -0.132 4.132 23 C 0.308 3.692 24 N -0.421 5.421 25 O -0.419 6.419 26 C -0.133 4.133 27 C -0.073 4.073 28 C -0.188 4.188 29 C -0.217 4.217 30 H 0.090 0.910 31 H 0.146 0.854 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.220 0.780 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.230 0.770 44 H 0.231 0.769 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.051 0.949 48 H 0.098 0.902 49 H 0.110 0.890 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.739 -23.294 -6.777 24.546 hybrid contribution 1.484 0.606 -0.149 1.610 sum -2.255 -22.688 -6.926 23.829 Atomic orbital electron populations 1.69827 1.07459 1.28980 1.36439 1.25880 0.94753 1.01223 0.92437 0.86272 0.80881 0.81092 0.78510 1.18519 1.19760 1.20069 1.19497 0.97361 0.90982 1.41390 0.90565 1.17616 0.92010 0.92147 0.89840 1.21041 0.98149 0.96296 0.99673 1.19856 1.00614 0.90303 1.03107 1.18628 0.96315 0.84774 1.05412 1.85880 1.53215 1.12272 1.71915 1.23111 0.97065 0.85345 0.98417 1.21918 0.83454 0.90087 0.99329 0.87831 1.86600 1.26430 1.96286 1.25036 1.22727 0.94561 0.90980 1.01985 1.61833 1.42302 1.01501 1.19340 1.22191 0.97453 1.00149 0.87939 1.21570 0.99581 0.91738 1.01393 1.21438 0.97585 0.94143 1.00045 1.20689 0.81743 0.84461 0.82306 1.43919 1.47336 1.39400 1.11400 1.90751 1.61209 1.47498 1.42423 1.21396 1.00331 0.97674 0.93936 1.22141 0.95070 0.88854 1.01279 1.20390 0.97662 0.97740 1.03002 1.20560 1.02724 0.92615 1.05840 0.90980 0.85430 0.88438 0.92804 0.92641 0.77953 0.93684 0.89859 0.88958 0.94886 0.91117 0.90104 0.88801 0.77020 0.76935 0.90868 0.90011 0.94872 0.90214 0.88967 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.72 10.86 55.54 0.60 -20.11 16 2 C 0.07 1.84 5.18 -17.34 -0.09 1.75 16 3 Si 0.91 18.62 29.59 -169.99 -5.03 13.59 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -12.23 9.05 -37.83 -0.34 -12.57 16 8 H 0.08 1.94 7.89 -52.48 -0.41 1.52 16 9 C 0.09 2.29 5.58 -106.80 -0.60 1.70 16 10 C -0.13 -3.45 8.64 -39.25 -0.34 -3.79 16 11 C -0.12 -2.91 9.92 -39.83 -0.40 -3.30 16 12 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 13 O -0.32 -6.37 10.09 -23.58 -0.24 -6.60 16 14 C 0.04 0.56 4.36 37.16 0.16 0.72 16 15 C 0.11 1.32 2.59 -26.73 -0.07 1.25 16 16 H 0.10 1.26 6.47 -51.93 -0.34 0.92 16 17 O -0.54 -7.10 13.01 -40.08 -0.52 -7.62 16 18 C 0.03 0.23 4.81 -3.82 -0.02 0.22 16 19 N -0.53 -4.67 4.54 -234.67 -1.07 -5.73 16 20 C 0.05 0.41 5.04 -3.84 -0.02 0.39 16 21 C -0.10 -0.71 5.26 -26.65 -0.14 -0.85 16 22 C -0.11 -0.75 2.59 -91.65 -0.24 -0.99 16 23 C 0.52 4.32 7.43 -10.99 -0.08 4.24 16 24 N -0.86 -3.88 8.78 31.22 0.27 -3.61 16 25 O -0.54 -6.90 16.81 5.55 0.09 -6.80 16 26 C -0.10 -0.77 4.68 -26.65 -0.12 -0.89 16 27 C 0.05 0.42 5.46 -3.83 -0.02 0.40 16 28 C -0.17 -3.77 8.96 -39.83 -0.36 -4.13 16 29 C -0.20 -4.82 9.74 -39.25 -0.38 -5.20 16 30 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 31 H 0.13 3.41 6.10 -52.48 -0.32 3.09 16 32 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 33 H 0.05 0.76 7.63 -51.93 -0.40 0.37 16 34 H 0.06 0.77 7.66 -51.93 -0.40 0.38 16 35 H 0.37 3.93 9.04 45.56 0.41 4.34 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.88 5.89 -51.93 -0.31 0.57 16 39 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.32 7.67 -51.93 -0.40 -0.07 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.40 0.73 8.32 -40.82 -0.34 0.39 16 44 H 0.40 1.53 8.93 -40.82 -0.36 1.17 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 47 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 48 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 49 H 0.09 1.76 6.27 -52.48 -0.33 1.43 16 50 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 400.45 15.07 6.03 6.03 Total: -1.00 -32.62 400.45 -10.13 -42.75 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -6.97 Total: 9.61 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -3.31 Total: -21.51 kcal Atomic # 7 Polarization: -29.27 SS G_CDS: -0.19 Total: -29.46 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.67 Total: -21.03 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.62 -10.13 -42.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044869298.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.812 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds