Wall clock time and date at job start Tue Mar 31 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86800 * 119.99709 * 2 1 4 4 H 1.48505 * 109.47028 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47238 * 300.00099 * 3 2 1 6 6 H 1.48499 * 109.47149 * 60.00318 * 3 2 1 7 7 C 1.39885 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00563 * 197.94137 * 7 2 1 9 9 C 1.41216 * 119.99925 * 17.94113 * 7 2 1 10 10 C 1.40833 * 120.17487 * 24.54652 * 9 7 2 11 11 C 1.36441 * 119.80936 * 180.02562 * 10 9 7 12 12 C 1.39317 * 120.18539 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.81836 * 179.97438 * 12 11 10 14 14 C 1.42897 * 117.00263 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.47401 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.47341 * 304.99849 * 15 14 13 17 17 O 1.42895 * 109.47513 * 64.99694 * 15 14 13 18 18 C 1.53000 * 109.47080 * 185.00018 * 15 14 13 19 19 N 1.46901 * 109.47130 * 179.97438 * 18 15 14 20 20 C 1.46847 * 111.00035 * 294.21180 * 19 18 15 21 21 C 1.53042 * 109.52446 * 174.16052 * 20 19 18 22 22 C 1.53119 * 109.27684 * 59.17891 * 21 20 19 23 23 C 1.50699 * 109.51829 * 182.44170 * 22 21 20 24 24 N 1.34777 * 120.00288 * 299.67629 * 23 22 21 25 25 O 1.21287 * 120.00100 * 119.68772 * 23 22 21 26 26 C 1.53118 * 109.15953 * 302.34251 * 22 21 20 27 27 C 1.46848 * 111.00134 * 169.99791 * 19 18 15 28 28 C 1.39311 * 120.36156 * 0.26090 * 12 11 10 29 29 C 1.36438 * 120.19005 * 359.47762 * 28 12 11 30 30 H 0.97002 * 120.00841 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.09948 * 359.97438 * 10 9 7 32 32 H 1.08005 * 119.90758 * 179.97438 * 11 10 9 33 33 H 1.08997 * 109.47072 * 60.00143 * 14 13 12 34 34 H 1.09005 * 109.46942 * 299.99967 * 14 13 12 35 35 H 0.96701 * 114.00285 * 60.00119 * 17 15 14 36 36 H 1.08997 * 109.47113 * 299.99375 * 18 15 14 37 37 H 1.09001 * 109.47458 * 60.00228 * 18 15 14 38 38 H 1.09003 * 109.46140 * 294.17567 * 20 19 18 39 39 H 1.08997 * 109.46619 * 54.14454 * 20 19 18 40 40 H 1.08997 * 109.50502 * 299.23681 * 21 20 19 41 41 H 1.08998 * 109.50139 * 179.11599 * 21 20 19 42 42 H 1.08995 * 109.57778 * 62.28359 * 22 21 20 43 43 H 0.97000 * 119.99623 * 0.02562 * 24 23 22 44 44 H 0.97002 * 120.00231 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.50678 * 297.71480 * 26 22 21 46 46 H 1.08999 * 109.53745 * 177.61815 * 26 22 21 47 47 H 1.08993 * 109.46136 * 305.85238 * 27 19 18 48 48 H 1.09005 * 109.46121 * 65.83681 * 27 19 18 49 49 H 1.08001 * 119.90445 * 179.72096 * 28 12 11 50 50 H 1.07990 * 120.10097 * 180.25965 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3465 -0.0006 5 1 1.8839 2.3965 -1.2125 6 1 1.8839 2.3964 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0489 -1.2340 0.2886 9 6 1.3537 -2.4048 -0.3757 10 6 0.2248 -2.3583 -1.2163 11 6 -0.4022 -3.5159 -1.5746 12 6 0.0718 -4.7415 -1.1119 13 8 -0.5577 -5.8880 -1.4725 14 6 -0.0212 -7.1106 -0.9630 15 6 -0.8564 -8.2862 -1.4740 16 1 -1.9030 -8.1289 -1.2133 17 8 -0.7283 -8.3799 -2.8941 18 6 -0.3598 -9.5824 -0.8305 19 7 -1.1621 -10.7111 -1.3207 20 6 -2.5552 -10.6019 -0.8691 21 6 -3.3906 -11.7097 -1.5150 22 6 -2.8126 -13.0724 -1.1231 23 6 -3.5946 -14.1657 -1.8045 24 7 -4.9147 -14.2983 -1.5672 25 8 -3.0360 -14.9264 -2.5662 26 6 -1.3473 -13.1418 -1.5619 27 6 -0.5711 -11.9926 -0.9146 28 6 1.1850 -4.7958 -0.2761 29 6 1.8267 -3.6479 0.0874 30 1 -0.4851 0.8400 0.0004 31 1 -0.1442 -1.4091 -1.5756 32 1 -1.2684 -3.4821 -2.2189 33 1 -0.0470 -7.0925 0.1265 34 1 1.0092 -7.2236 -1.3003 35 1 0.1786 -8.5205 -3.1989 36 1 0.6867 -9.7398 -1.0913 37 1 -0.4576 -9.5110 0.2527 38 1 -2.5943 -10.7031 0.2155 39 1 -2.9555 -9.6301 -1.1577 40 1 -3.3632 -11.6009 -2.5992 41 1 -4.4211 -11.6379 -1.1674 42 1 -2.8757 -13.1987 -0.0424 43 1 -5.3615 -13.6898 -0.9582 44 1 -5.4179 -15.0023 -2.0055 45 1 -1.2877 -13.0555 -2.6468 46 1 -0.9176 -14.0931 -1.2483 47 1 0.4696 -12.0307 -1.2363 48 1 -0.6197 -12.0874 0.1703 49 1 1.5435 -5.7496 0.0820 50 1 2.6920 -3.6920 0.7320 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044869302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:52 Heat of formation + Delta-G solvation = -113.969856 kcal Electronic energy + Delta-G solvation = -29738.666408 eV Core-core repulsion = 25537.158862 eV Total energy + Delta-G solvation = -4201.507546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.188 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.52973 -39.25603 -38.56905 -37.10218 -35.96741 -34.30557 -33.48975 -33.32103 -31.22942 -30.51466 -29.55602 -28.97470 -26.74196 -24.86801 -24.01692 -23.62128 -21.88777 -21.10922 -20.62178 -20.58252 -19.96474 -17.96850 -17.37274 -17.22005 -17.00103 -16.51902 -16.25283 -15.85665 -15.35073 -15.20221 -15.09042 -14.82176 -14.47993 -14.15567 -13.96786 -13.86082 -13.73334 -13.40032 -13.23700 -12.83580 -12.56298 -12.27300 -12.14730 -12.06395 -11.79320 -11.70954 -11.52929 -11.39620 -11.17653 -11.07566 -11.04767 -10.87417 -10.66917 -10.57135 -10.17615 -10.10410 -10.01091 -9.87536 -9.82208 -9.34391 -9.02907 -8.57367 -7.65237 -7.03982 -6.73218 -4.26306 2.24748 2.76186 2.94176 3.08385 3.10643 3.13458 3.19781 3.33948 3.94498 4.01872 4.21222 4.34145 4.43741 4.49925 4.61199 4.77630 4.80871 4.87987 4.93723 5.02893 5.11251 5.13469 5.19149 5.27973 5.31836 5.40754 5.51275 5.55073 5.61111 5.66405 5.68331 5.77341 6.00026 6.01514 6.04954 6.22006 6.34673 6.69125 6.74397 6.78314 6.88760 6.96961 7.10332 7.17801 7.45654 7.54900 7.77344 7.78777 7.85620 8.00018 8.19714 8.44629 8.64750 8.89242 8.97951 10.21226 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.038102 B = 0.001524 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.683573 B =18362.656213 C =18665.377751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.087 3.913 10 C -0.133 4.133 11 C -0.119 4.119 12 C -0.009 4.009 13 O -0.317 6.317 14 C 0.038 3.962 15 C 0.116 3.884 16 H 0.103 0.897 17 O -0.538 6.538 18 C 0.026 3.974 19 N -0.526 5.526 20 C 0.053 3.947 21 C -0.105 4.105 22 C -0.110 4.110 23 C 0.523 3.477 24 N -0.857 5.857 25 O -0.542 6.542 26 C -0.096 4.096 27 C 0.055 3.945 28 C -0.168 4.168 29 C -0.198 4.198 30 H 0.279 0.721 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.371 0.629 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.401 0.599 44 H 0.400 0.600 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.033 0.967 49 H 0.092 0.908 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.193 -22.930 0.929 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.153 4.153 11 C -0.138 4.138 12 C -0.052 4.052 13 O -0.233 6.233 14 C -0.040 4.040 15 C 0.056 3.944 16 H 0.121 0.879 17 O -0.342 6.342 18 C -0.102 4.102 19 N -0.250 5.250 20 C -0.075 4.075 21 C -0.144 4.144 22 C -0.132 4.132 23 C 0.308 3.692 24 N -0.421 5.421 25 O -0.418 6.418 26 C -0.134 4.134 27 C -0.072 4.072 28 C -0.187 4.187 29 C -0.218 4.218 30 H 0.090 0.910 31 H 0.143 0.857 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.217 0.783 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.230 0.770 44 H 0.231 0.769 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.051 0.949 49 H 0.110 0.890 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.665 -23.074 -0.114 24.314 hybrid contribution 0.650 0.628 1.484 1.737 sum -7.014 -22.446 1.370 23.557 Atomic orbital electron populations 1.69837 1.07514 1.29046 1.36102 1.25874 0.94710 1.01230 0.92368 0.86296 0.80978 0.81118 0.78514 1.18477 1.19727 1.20092 1.19489 0.98110 0.91230 1.40499 0.90527 1.17608 0.91872 0.92127 0.89900 1.20984 0.98468 0.96320 0.99482 1.19847 1.00843 0.90231 1.02865 1.18620 0.97027 0.84840 1.04715 1.85884 1.54470 1.12007 1.70891 1.23117 0.97243 0.85249 0.98354 1.21860 1.00647 0.89960 0.81941 0.87913 1.86628 1.32759 1.95158 1.19672 1.22717 0.98320 0.91290 0.97871 1.61774 1.01753 1.01308 1.60196 1.22147 0.88726 0.99741 0.96896 1.21574 0.98268 0.91743 1.02775 1.21430 0.96761 0.94034 1.00940 1.20688 0.82370 0.85007 0.81149 1.43920 1.10191 1.37385 1.50570 1.90753 1.69610 1.45001 1.36464 1.21403 0.91820 0.97597 1.02561 1.22134 0.98941 0.88790 0.97372 1.20391 0.98041 0.97715 1.02577 1.20550 1.03098 0.92539 1.05626 0.90968 0.85661 0.88430 0.92641 0.92897 0.78281 0.89951 0.93608 0.94705 0.89568 0.90063 0.91064 0.88775 0.77032 0.76925 0.89969 0.90847 0.90187 0.94896 0.88979 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.64 10.96 55.54 0.61 -20.03 16 2 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 3 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 7 C -0.46 -12.27 9.04 -37.83 -0.34 -12.61 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 9 C 0.09 2.33 5.57 -106.80 -0.60 1.73 16 10 C -0.13 -3.48 8.64 -39.25 -0.34 -3.82 16 11 C -0.12 -2.90 9.92 -39.83 -0.40 -3.29 16 12 C -0.01 -0.20 6.71 -38.78 -0.26 -0.46 16 13 O -0.32 -6.41 10.09 -23.57 -0.24 -6.65 16 14 C 0.04 0.56 4.36 37.16 0.16 0.72 16 15 C 0.12 1.40 3.12 -26.73 -0.08 1.31 16 16 H 0.10 1.30 6.43 -51.93 -0.33 0.97 16 17 O -0.54 -7.24 13.17 -40.08 -0.53 -7.76 16 18 C 0.03 0.24 4.62 -3.82 -0.02 0.22 16 19 N -0.53 -4.68 4.52 -234.67 -1.06 -5.74 16 20 C 0.05 0.42 5.29 -3.83 -0.02 0.40 16 21 C -0.11 -0.70 5.26 -26.65 -0.14 -0.84 16 22 C -0.11 -0.74 2.59 -91.65 -0.24 -0.97 16 23 C 0.52 4.28 7.43 -10.99 -0.08 4.20 16 24 N -0.86 -3.81 8.78 31.22 0.27 -3.54 16 25 O -0.54 -6.87 16.81 5.55 0.09 -6.78 16 26 C -0.10 -0.77 4.68 -26.65 -0.12 -0.89 16 27 C 0.06 0.42 5.46 -3.83 -0.02 0.40 16 28 C -0.17 -3.76 8.96 -39.83 -0.36 -4.12 16 29 C -0.20 -4.84 9.74 -39.25 -0.38 -5.22 16 30 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 31 H 0.13 3.35 6.16 -52.49 -0.32 3.03 16 32 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 33 H 0.06 0.79 7.64 -51.93 -0.40 0.39 16 34 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 35 H 0.37 3.86 9.05 45.56 0.41 4.27 16 36 H 0.08 0.68 7.99 -51.93 -0.41 0.26 16 37 H 0.05 0.39 8.12 -51.93 -0.42 -0.03 16 38 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 0.77 6.21 -51.93 -0.32 0.45 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.31 7.66 -51.93 -0.40 -0.09 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.40 0.69 8.32 -40.82 -0.34 0.35 16 44 H 0.40 1.51 8.93 -40.82 -0.36 1.14 16 45 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.08 0.58 8.02 -51.93 -0.42 0.16 16 48 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.09 1.76 6.27 -52.49 -0.33 1.43 16 50 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 401.31 15.07 6.05 6.05 Total: -1.00 -32.90 401.31 -10.13 -43.04 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.97 Total: 9.28 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -3.32 Total: -21.46 kcal Atomic # 7 Polarization: -29.13 SS G_CDS: -0.18 Total: -29.30 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.67 Total: -21.19 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.90 -10.13 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044869302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.934 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds