Wall clock time and date at job start Tue Mar 31 2020 05:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1 5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1 6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1 7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1 9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1 10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2 11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7 12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9 13 13 C 1.46898 * 110.99940 * 172.61011 * 12 11 10 14 14 C 1.50694 * 109.47313 * 294.30236 * 13 12 11 15 15 N 1.30980 * 126.43724 * 89.71670 * 14 13 12 16 16 C 1.35221 * 105.57778 * 179.97438 * 15 14 13 17 17 C 1.48404 * 126.41222 * 180.09433 * 16 15 14 18 18 C 1.39346 * 120.10653 * 359.97438 * 17 16 15 19 19 C 1.37987 * 119.89068 * 179.72345 * 18 17 16 20 20 C 1.38450 * 120.10557 * 0.57934 * 19 18 17 21 21 Cl 1.73603 * 119.89258 * 179.70148 * 20 19 18 22 22 C 1.38447 * 120.21525 * 359.67144 * 20 19 18 23 23 C 1.37984 * 120.10809 * 0.05157 * 22 20 19 24 24 N 1.30768 * 107.17265 * 0.34501 * 16 15 14 25 25 O 1.21290 * 110.09229 * 359.77919 * 24 16 15 26 26 C 1.46903 * 111.26992 * 296.76086 * 12 11 10 27 27 C 1.47080 * 120.88364 * 206.56279 * 9 7 2 28 28 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.63087 * 248.51914 * 10 9 7 30 30 H 1.08996 * 109.63194 * 9.10611 * 10 9 7 31 31 H 1.09005 * 109.64569 * 294.08201 * 11 10 9 32 32 H 1.08993 * 109.45072 * 173.95996 * 11 10 9 33 33 H 1.09000 * 109.47430 * 54.30450 * 13 12 11 34 34 H 1.09005 * 109.47063 * 174.30016 * 13 12 11 35 35 H 1.08000 * 120.05381 * 359.97409 * 18 17 16 36 36 H 1.08002 * 119.94749 * 180.27073 * 19 18 17 37 37 H 1.07999 * 119.94844 * 180.02562 * 22 20 19 38 38 H 1.08001 * 120.05491 * 180.02562 * 23 22 20 39 39 H 1.09001 * 109.49186 * 303.14219 * 26 12 11 40 40 H 1.09000 * 109.51153 * 183.07955 * 26 12 11 41 41 H 1.09004 * 109.62440 * 350.90141 * 27 9 7 42 42 H 1.09004 * 109.62907 * 111.27775 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4048 2.1001 -1.3960 5 1 1.4968 2.6242 0.7907 6 1 3.5909 1.4155 0.6053 7 6 2.0104 -1.2021 -0.0005 8 1 3.0541 -1.2230 0.2760 9 7 1.3732 -2.3604 -0.3571 10 6 0.2096 -2.3359 -1.2565 11 6 0.4569 -3.3417 -2.3921 12 7 0.7680 -4.6565 -1.8155 13 6 0.8391 -5.6862 -2.8608 14 6 -0.5233 -5.8705 -3.4779 15 7 -1.0050 -5.2208 -4.5082 16 6 -2.2484 -5.7160 -4.7008 17 6 -3.2075 -5.3030 -5.7554 18 6 -2.8566 -4.3122 -6.6701 19 6 -3.7496 -3.9357 -7.6524 20 6 -4.9971 -4.5322 -7.7225 21 17 -6.1192 -4.0488 -8.9557 22 6 -5.3523 -5.5134 -6.8126 23 6 -4.4640 -5.9008 -5.8303 24 7 -2.4496 -6.6230 -3.7806 25 8 -1.4699 -6.7227 -3.0725 26 6 2.0102 -4.6146 -1.0325 27 6 1.8303 -3.6617 0.1539 28 1 -0.4851 0.8399 0.0004 29 1 -0.6867 -2.6167 -0.7035 30 1 0.0888 -1.3354 -1.6717 31 1 1.2942 -3.0054 -3.0036 32 1 -0.4375 -3.4181 -3.0103 33 1 1.5470 -5.3757 -3.6292 34 1 1.1693 -6.6276 -2.4216 35 1 -1.8857 -3.8425 -6.6130 36 1 -3.4770 -3.1709 -8.3646 37 1 -6.3263 -5.9762 -6.8715 38 1 -4.7418 -6.6666 -5.1213 39 1 2.8259 -4.2606 -1.6630 40 1 2.2425 -5.6140 -0.6644 41 1 2.7815 -3.5379 0.6717 42 1 1.0884 -4.0657 0.8427 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044895411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:07 Heat of formation + Delta-G solvation = 128.406229 kcal Electronic energy + Delta-G solvation = -27292.043608 eV Core-core repulsion = 23302.382004 eV Total energy + Delta-G solvation = -3989.661603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.57227 -39.64686 -38.34713 -36.93779 -35.85263 -34.81421 -32.98777 -31.56367 -31.30757 -30.59353 -29.99547 -28.07161 -25.35418 -24.90087 -23.59893 -22.74796 -22.68037 -22.40382 -20.98316 -19.21409 -18.16509 -18.08442 -17.12333 -16.80954 -16.10394 -15.72646 -15.28222 -14.97999 -14.68368 -14.53483 -14.33409 -13.99243 -13.92562 -13.53743 -13.46568 -13.13695 -12.79977 -12.65011 -12.49869 -12.19641 -11.98064 -11.86772 -11.65451 -11.40894 -11.26692 -11.13650 -11.03725 -10.78696 -10.54796 -10.47749 -10.25798 -10.12653 -9.80458 -9.69442 -9.47486 -8.85021 -8.55584 -8.11351 -6.72757 -5.81251 -3.23029 0.28605 0.89637 1.20094 1.71571 2.22518 2.74825 3.28840 3.36206 3.36217 3.43281 3.44737 3.80042 4.24280 4.44036 4.47594 4.47947 4.75457 4.86185 5.01581 5.10680 5.21868 5.26076 5.34748 5.37290 5.48108 5.56596 5.70789 5.75559 5.79654 5.81363 5.95714 6.01967 6.06169 6.12878 6.23751 6.29746 6.46277 6.59456 6.84401 7.13009 7.27712 7.50377 7.62213 7.77076 8.06788 8.39445 9.17063 9.80495 10.38330 11.27544 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.002444 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.826919 B =11455.332936 C =13330.484999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.180 3.820 11 C 0.031 3.969 12 N -0.530 5.530 13 C 0.138 3.862 14 C 0.214 3.786 15 N -0.472 5.472 16 C 0.205 3.795 17 C -0.010 4.010 18 C -0.061 4.061 19 C -0.112 4.112 20 C -0.021 4.021 21 Cl -0.067 7.067 22 C -0.113 4.113 23 C -0.073 4.073 24 N -0.376 5.376 25 O 0.091 5.909 26 C 0.047 3.953 27 C 0.148 3.852 28 H 0.254 0.746 29 H 0.025 0.975 30 H 0.090 0.910 31 H 0.033 0.967 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.036 0.964 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.050 -13.994 -14.902 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.319 5.319 10 C 0.054 3.946 11 C -0.098 4.098 12 N -0.257 5.257 13 C 0.008 3.992 14 C -0.007 4.007 15 N -0.206 5.206 16 C -0.065 4.065 17 C -0.012 4.012 18 C -0.081 4.081 19 C -0.131 4.131 20 C -0.048 4.048 21 Cl -0.038 7.038 22 C -0.131 4.131 23 C -0.093 4.093 24 N -0.082 5.082 25 O 0.030 5.970 26 C -0.081 4.081 27 C 0.021 3.979 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.108 0.892 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.346 -14.079 -14.900 21.777 hybrid contribution 0.950 1.151 -0.530 1.584 sum -6.396 -12.928 -15.430 21.122 Atomic orbital electron populations 1.70026 1.05235 1.25554 1.53849 1.25040 0.95303 0.98442 1.00921 0.86269 0.79134 0.83736 0.77593 1.21489 1.21758 1.20387 1.19199 0.92715 0.84782 1.41601 0.91475 1.44168 1.34385 1.01268 1.52035 1.20945 0.88938 0.96639 0.88095 1.23132 0.99413 0.88396 0.98855 1.62007 1.35943 1.06063 1.21649 1.20618 0.83931 0.99477 0.95161 1.28684 0.95429 0.86577 0.90047 1.72018 1.07443 1.24621 1.16487 1.23744 0.91961 0.93927 0.96872 1.17428 0.91866 0.98395 0.93531 1.21233 1.00216 0.94553 0.92145 1.21039 0.91842 1.00670 0.99505 1.21131 0.92034 0.98509 0.93145 1.98385 1.61355 1.90960 1.53066 1.20958 1.00663 0.97127 0.94393 1.21142 0.91610 0.98945 0.97569 1.74854 1.07007 1.20578 1.05727 1.85278 1.17889 1.49339 1.44510 1.22686 0.88581 1.00142 0.96722 1.20983 0.98149 0.86430 0.92340 0.93568 0.95655 0.89150 0.94855 0.91768 0.90245 0.87300 0.83497 0.84019 0.84161 0.84161 0.94614 0.91297 0.92190 0.95460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.10 11.16 55.49 0.62 -25.48 16 2 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16 3 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.25 -6.82 9.63 -15.06 -0.15 -6.97 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.60 -14.65 3.03 -171.74 -0.52 -15.17 16 10 C 0.18 4.31 5.45 -3.36 -0.02 4.29 16 11 C 0.03 0.59 5.49 -3.46 -0.02 0.57 16 12 N -0.53 -8.63 4.62 -235.47 -1.09 -9.72 16 13 C 0.14 1.69 5.59 -4.98 -0.03 1.67 16 14 C 0.21 2.98 7.12 -12.99 -0.09 2.88 16 15 N -0.47 -7.00 10.33 -9.89 -0.10 -7.10 16 16 C 0.20 2.94 7.80 -156.12 -1.22 1.72 16 17 C -0.01 -0.13 5.88 -104.89 -0.62 -0.74 16 18 C -0.06 -0.67 9.70 -39.26 -0.38 -1.05 16 19 C -0.11 -1.05 9.81 -39.60 -0.39 -1.44 16 20 C -0.02 -0.19 6.32 -39.43 -0.25 -0.44 16 21 Cl -0.07 -0.57 28.95 -51.86 -1.50 -2.07 16 22 C -0.11 -1.01 9.81 -39.60 -0.39 -1.40 16 23 C -0.07 -0.76 9.69 -39.26 -0.38 -1.14 16 24 N -0.38 -5.55 11.86 30.97 0.37 -5.18 16 25 O 0.09 1.31 11.29 18.05 0.20 1.51 16 26 C 0.05 0.75 5.62 -3.70 -0.02 0.72 16 27 C 0.15 2.95 6.69 -3.61 -0.02 2.92 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 2.42 6.11 -51.93 -0.32 2.10 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.22 6.37 -51.93 -0.33 0.89 16 33 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 34 H 0.11 1.00 7.97 -51.93 -0.41 0.58 16 35 H 0.15 1.57 7.88 -52.49 -0.41 1.16 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.14 1.36 7.87 -52.49 -0.41 0.95 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.85 7.99 -51.93 -0.41 0.44 16 41 H 0.06 1.14 7.95 -51.93 -0.41 0.72 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -30.61 366.83 -10.80 -41.41 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.22 Total: -1.73 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -4.06 Total: 1.57 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.72 Total: -62.65 kcal Atomic # 8 Polarization: 1.31 SS G_CDS: 0.20 Total: 1.51 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.61 -10.80 -41.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044895411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.813 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds