Wall clock time and date at job start Tue Mar 31 2020 05:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46901 * 109.46840 * 2 1 4 4 C 1.46753 * 111.00629 * 310.01086 * 3 2 1 5 5 C 1.53415 * 108.59809 * 184.99998 * 4 3 2 6 6 H 1.08998 * 109.78220 * 303.53517 * 5 4 3 7 7 C 1.53004 * 109.77301 * 182.79307 * 5 4 3 8 8 N 1.46902 * 109.46823 * 179.49564 * 7 5 4 9 9 C 1.46905 * 110.99854 * 160.27265 * 8 7 5 10 10 C 1.46907 * 110.99765 * 284.21481 * 8 7 5 11 11 C 1.50695 * 109.46995 * 170.00236 * 10 8 7 12 12 O 1.21283 * 120.00467 * 0.02562 * 11 10 8 13 13 N 1.34783 * 120.00002 * 179.97438 * 11 10 8 14 14 C 1.46499 * 119.99831 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46711 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00358 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00124 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99883 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00367 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47154 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47063 * 299.99645 * 19 17 15 22 22 H 1.48500 * 109.47241 * 59.99768 * 19 17 15 23 23 O 1.43148 * 107.94680 * 63.16787 * 5 4 3 24 24 C 1.36145 * 116.67515 * 314.68096 * 23 5 4 25 25 C 1.38777 * 118.75431 * 194.97884 * 24 23 5 26 26 C 1.38174 * 120.21097 * 180.22908 * 25 24 23 27 27 C 1.38262 * 120.02555 * 359.97438 * 26 25 24 28 28 C 1.38059 * 120.11600 * 359.90990 * 27 26 25 29 29 C 1.38958 * 121.37744 * 15.02880 * 24 23 5 30 30 H 1.09005 * 109.47010 * 299.99673 * 1 2 3 31 31 H 1.08995 * 109.47240 * 60.00109 * 1 2 3 32 32 H 1.09001 * 109.46868 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46827 * 240.00230 * 2 1 3 34 34 H 1.08995 * 109.47240 * 119.99891 * 2 1 3 35 35 H 1.08998 * 109.65403 * 65.24468 * 4 3 2 36 36 H 1.08998 * 109.56766 * 304.71149 * 4 3 2 37 37 H 1.08993 * 109.47109 * 59.49201 * 7 5 4 38 38 H 1.08998 * 109.47141 * 299.48788 * 7 5 4 39 39 H 1.08998 * 109.46801 * 189.54894 * 9 8 7 40 40 H 1.08998 * 109.46655 * 309.54038 * 9 8 7 41 41 H 1.08995 * 109.47513 * 69.54719 * 9 8 7 42 42 H 1.08997 * 109.46602 * 50.00471 * 10 8 7 43 43 H 1.09000 * 109.47560 * 290.00609 * 10 8 7 44 44 H 0.96996 * 119.99931 * 0.02562 * 13 11 10 45 45 H 1.08997 * 109.47385 * 60.00710 * 14 13 11 46 46 H 1.08994 * 109.47355 * 300.00076 * 14 13 11 47 47 H 0.97003 * 120.00172 * 359.97438 * 18 17 15 48 48 H 1.08010 * 119.89747 * 0.20633 * 25 24 23 49 49 H 1.07995 * 119.98975 * 180.02562 * 26 25 24 50 50 H 1.07998 * 119.94244 * 179.97438 * 27 26 25 51 51 H 1.08000 * 119.88535 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3645 2.1746 -1.0493 5 6 2.0030 3.5691 -1.0829 6 1 1.9272 4.0334 -0.0997 7 6 1.2924 4.4389 -2.1220 8 7 1.9010 5.7758 -2.1401 9 6 1.5941 6.4769 -3.3940 10 6 1.4727 6.5649 -0.9774 11 6 2.2957 7.8245 -0.8944 12 8 3.1543 8.0436 -1.7226 13 7 2.0771 8.7082 0.0995 14 6 2.8768 9.9330 0.1798 15 6 2.4375 10.7424 1.3726 16 1 1.6418 10.3810 2.0071 17 6 3.0505 11.9451 1.6533 18 7 4.0184 12.3861 0.8798 19 14 2.5055 12.9488 3.1314 20 1 3.3154 14.1909 3.2122 21 1 1.0705 13.3028 2.9875 22 1 2.6968 12.1511 4.3693 23 8 3.3805 3.4150 -1.4408 24 6 4.0697 2.4267 -0.8071 25 6 5.4559 2.4312 -0.8734 26 6 6.1853 1.4399 -0.2453 27 6 5.5348 0.4392 0.4526 28 6 4.1562 0.4289 0.5252 29 6 3.4139 1.4237 -0.1036 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.3006 2.2645 -0.8301 36 1 1.5022 1.6856 -2.0137 37 1 0.2368 4.5236 -1.8642 38 1 1.3905 3.9818 -3.1066 39 1 2.1900 7.3875 -3.4562 40 1 1.8299 5.8301 -4.2390 41 1 0.5350 6.7335 -3.4171 42 1 1.6127 5.9789 -0.0691 43 1 0.4195 6.8253 -1.0829 44 1 1.3902 8.5332 0.7616 45 1 2.7367 10.5187 -0.7287 46 1 3.9300 9.6730 0.2856 47 1 4.3013 11.8650 0.1120 48 1 5.9663 3.2120 -1.4179 49 1 7.2639 1.4472 -0.2988 50 1 6.1062 -0.3352 0.9426 51 1 3.6519 -0.3544 1.0717 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048262185.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:22 Heat of formation + Delta-G solvation = -27.140453 kcal Electronic energy + Delta-G solvation = -30791.978536 eV Core-core repulsion = 26691.954858 eV Total energy + Delta-G solvation = -4100.023678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.35567 -39.25967 -37.93169 -37.32526 -36.46569 -34.33552 -32.41594 -31.98473 -31.61135 -30.46225 -28.80187 -28.11494 -26.56292 -26.17437 -23.92032 -23.47752 -22.75017 -21.81138 -21.30584 -20.28740 -19.68368 -18.46018 -17.59525 -17.20693 -16.73172 -16.15302 -15.74892 -15.54987 -15.33448 -15.15626 -15.01645 -14.49525 -14.38183 -14.13378 -14.05115 -13.90247 -13.69942 -13.65621 -13.27048 -12.92709 -12.58244 -12.55522 -12.38998 -12.30543 -12.17136 -12.04800 -11.94312 -11.74328 -11.60573 -11.41249 -11.29481 -11.00651 -10.85437 -10.75153 -10.69689 -10.15395 -10.13944 -9.14493 -8.77475 -8.66627 -8.63199 -8.27330 -7.95363 -7.79193 -6.50233 -4.23702 1.15795 1.28288 2.97749 3.22787 3.31399 3.38040 3.40275 3.57122 3.59780 3.70015 4.11747 4.31969 4.37526 4.47073 4.55563 4.60770 4.67580 4.74181 4.88279 4.93842 4.95986 5.00269 5.07509 5.17135 5.22025 5.27633 5.28491 5.31307 5.34121 5.36920 5.46970 5.50548 5.56462 5.61348 5.64463 5.65985 5.76804 5.92700 6.07312 6.25113 6.37362 6.47152 6.59398 6.79403 6.87618 6.99777 7.05992 7.24779 7.35825 7.39193 7.68138 8.28307 8.49323 8.73211 9.03500 9.50185 10.89932 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.002276 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.124129 B =12300.465482 C =12821.668657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.054 3.946 3 N -0.486 5.486 4 C 0.018 3.982 5 C 0.094 3.906 6 H 0.082 0.918 7 C 0.063 3.937 8 N -0.513 5.513 9 C 0.022 3.978 10 C 0.033 3.967 11 C 0.501 3.499 12 O -0.537 6.537 13 N -0.711 5.711 14 C 0.242 3.758 15 C -0.623 4.623 16 H 0.056 0.944 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 1.075 2.925 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.286 1.286 23 O -0.287 6.287 24 C 0.095 3.905 25 C -0.123 4.123 26 C -0.111 4.111 27 C -0.132 4.132 28 C -0.126 4.126 29 C 0.036 3.964 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.019 0.981 42 H 0.096 0.904 43 H 0.059 0.941 44 H 0.391 0.609 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.273 0.727 48 H 0.134 0.866 49 H 0.127 0.873 50 H 0.123 0.877 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.513 -28.805 -3.677 29.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.072 4.072 3 N -0.202 5.202 4 C -0.109 4.109 5 C 0.037 3.963 6 H 0.100 0.900 7 C -0.066 4.066 8 N -0.237 5.237 9 C -0.125 4.125 10 C -0.098 4.098 11 C 0.285 3.715 12 O -0.414 6.414 13 N -0.360 5.360 14 C 0.121 3.879 15 C -0.661 4.661 16 H 0.075 0.925 17 C -0.184 4.184 18 N -0.536 5.536 19 Si 0.903 3.097 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.213 1.213 23 O -0.200 6.200 24 C 0.048 3.952 25 C -0.142 4.142 26 C -0.130 4.130 27 C -0.150 4.150 28 C -0.146 4.146 29 C -0.062 4.062 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.114 0.886 43 H 0.077 0.923 44 H 0.224 0.776 45 H 0.033 0.967 46 H 0.035 0.965 47 H 0.083 0.917 48 H 0.152 0.848 49 H 0.145 0.855 50 H 0.141 0.859 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.232 -26.919 -3.145 27.810 hybrid contribution -1.513 -1.863 -0.914 2.568 sum -7.745 -28.782 -4.059 30.081 Atomic orbital electron populations 1.21944 0.94239 1.02507 1.02851 1.22259 0.96070 0.86911 1.01931 1.58846 1.02955 1.13150 1.45281 1.22835 1.00374 0.94316 0.93391 1.22665 0.80108 0.93893 0.99631 0.89987 1.22125 0.95269 0.89788 0.99408 1.61498 1.58710 1.01184 1.02278 1.22581 0.98785 1.00995 0.90178 1.22113 0.97385 0.94751 0.95580 1.20272 0.84557 0.84419 0.82296 1.90623 1.33757 1.76756 1.40306 1.46263 1.39027 1.22471 1.28258 1.19132 0.90857 0.80705 0.97228 1.22063 1.23317 1.08036 1.12718 0.92540 1.25877 0.94138 0.95945 1.02416 1.70757 1.26383 1.40625 1.15869 0.83454 0.75767 0.76126 0.74385 1.20549 1.21323 1.21268 1.86448 1.23055 1.49584 1.60920 1.18794 0.91849 0.89305 0.95277 1.20554 0.90495 1.00612 1.02525 1.20895 0.99800 0.94339 0.98011 1.20870 0.93839 0.99505 1.00831 1.20826 0.94054 0.98375 1.01388 1.18879 0.88472 0.97184 1.01618 0.91401 0.92240 0.91512 0.93663 0.89633 0.87951 0.92450 0.92287 0.89483 0.88668 0.91677 0.96219 0.88576 0.92272 0.77625 0.96655 0.96549 0.91677 0.84831 0.85484 0.85921 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 9.34 37.16 0.35 -0.50 16 2 C 0.05 0.38 5.08 -3.82 -0.02 0.36 16 3 N -0.49 -4.80 4.75 -170.83 -0.81 -5.61 16 4 C 0.02 0.16 4.14 -3.69 -0.02 0.15 16 5 C 0.09 1.07 3.07 -26.51 -0.08 0.99 16 6 H 0.08 1.02 6.77 -51.93 -0.35 0.67 16 7 C 0.06 0.66 4.72 -3.82 -0.02 0.64 16 8 N -0.51 -7.34 4.34 -244.37 -1.06 -8.40 16 9 C 0.02 0.30 9.19 60.07 0.55 0.86 16 10 C 0.03 0.48 5.27 -4.97 -0.03 0.46 16 11 C 0.50 10.15 7.59 -10.99 -0.08 10.06 16 12 O -0.54 -12.98 14.31 5.56 0.08 -12.90 16 13 N -0.71 -15.29 5.55 -61.48 -0.34 -15.63 16 14 C 0.24 6.49 4.74 -5.19 -0.02 6.47 16 15 C -0.62 -17.33 9.28 -34.44 -0.32 -17.65 16 16 H 0.06 1.48 7.60 -52.49 -0.40 1.09 16 17 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 18 N -0.90 -27.62 13.65 55.43 0.76 -26.86 16 19 Si 1.08 24.62 29.90 -169.99 -5.08 19.54 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 23 O -0.29 -4.15 9.97 -20.20 -0.20 -4.35 16 24 C 0.10 1.29 6.47 -39.12 -0.25 1.04 16 25 C -0.12 -1.55 9.94 -39.41 -0.39 -1.94 16 26 C -0.11 -1.16 10.04 -39.60 -0.40 -1.55 16 27 C -0.13 -1.25 10.03 -39.64 -0.40 -1.65 16 28 C -0.13 -1.26 9.07 -39.31 -0.36 -1.62 16 29 C 0.04 0.42 5.81 -83.59 -0.49 -0.06 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.30 6.43 -51.93 -0.33 -0.03 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.33 8.12 -51.93 -0.42 -0.09 16 34 H 0.09 0.55 6.44 -51.93 -0.33 0.22 16 35 H 0.10 0.69 6.55 -51.93 -0.34 0.35 16 36 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 37 H 0.06 0.47 8.00 -51.93 -0.42 0.06 16 38 H 0.09 0.83 7.74 -51.93 -0.40 0.43 16 39 H 0.09 1.65 6.00 -51.93 -0.31 1.34 16 40 H 0.06 0.77 7.84 -51.93 -0.41 0.37 16 41 H 0.02 0.23 8.07 -51.93 -0.42 -0.18 16 42 H 0.10 1.27 6.62 -51.93 -0.34 0.93 16 43 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 44 H 0.39 7.26 8.32 -40.82 -0.34 6.92 16 45 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 46 H 0.02 0.49 8.01 -51.93 -0.42 0.07 16 47 H 0.27 8.47 7.22 -40.82 -0.29 8.18 16 48 H 0.13 1.67 8.06 -52.48 -0.42 1.24 16 49 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 50 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 51 H 0.13 0.99 6.13 -52.49 -0.32 0.67 16 LS Contribution 403.55 15.07 6.08 6.08 Total: -1.00 -35.10 403.55 -10.67 -45.77 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.02 Total: 5.79 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.07 Total: -3.42 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -1.46 Total: -56.50 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.12 Total: -17.25 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.54 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.10 -10.67 -45.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048262185.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.631 kcal (2) G-P(sol) polarization free energy of solvation -35.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds