Wall clock time and date at job start Tue Mar 31 2020 05:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.47602 * 2 1 4 4 C 1.46756 * 111.00094 * 190.00232 * 3 2 1 5 5 C 1.53423 * 108.59724 * 285.48480 * 4 3 2 6 6 H 1.09003 * 109.77524 * 56.39691 * 5 4 3 7 7 C 1.53000 * 109.77975 * 177.14926 * 5 4 3 8 8 N 1.46897 * 109.47382 * 180.31686 * 7 5 4 9 9 C 1.46895 * 111.00178 * 199.76802 * 8 7 5 10 10 C 1.46899 * 110.99950 * 75.81288 * 8 7 5 11 11 C 1.50699 * 109.47422 * 190.00132 * 10 8 7 12 12 O 1.21282 * 119.99667 * 0.02562 * 11 10 8 13 13 N 1.34775 * 120.00636 * 180.02562 * 11 10 8 14 14 C 1.46491 * 120.00422 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47376 * 179.97438 * 14 13 11 16 16 H 1.08006 * 119.99850 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00276 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99862 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00243 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47473 * 89.99289 * 19 17 15 21 21 H 1.48498 * 109.47116 * 209.99920 * 19 17 15 22 22 H 1.48500 * 109.46656 * 329.99614 * 19 17 15 23 23 O 1.43141 * 107.89521 * 296.74969 * 5 4 3 24 24 C 1.36141 * 116.68275 * 45.34117 * 23 5 4 25 25 C 1.38777 * 118.75166 * 165.22899 * 24 23 5 26 26 C 1.38179 * 120.20664 * 179.52218 * 25 24 23 27 27 C 1.38254 * 120.02929 * 0.07128 * 26 25 24 28 28 C 1.38068 * 120.11431 * 0.07332 * 27 26 25 29 29 C 1.38973 * 121.37676 * 344.99919 * 24 23 5 30 30 H 1.09001 * 109.47336 * 59.99506 * 1 2 3 31 31 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46887 * 299.99682 * 1 2 3 33 33 H 1.09004 * 109.47189 * 239.99883 * 2 1 3 34 34 H 1.09001 * 109.47336 * 120.00494 * 2 1 3 35 35 H 1.08998 * 109.61845 * 165.75235 * 4 3 2 36 36 H 1.09005 * 109.76904 * 45.30288 * 4 3 2 37 37 H 1.08995 * 109.47241 * 60.31470 * 7 5 4 38 38 H 1.09006 * 109.46796 * 300.31961 * 7 5 4 39 39 H 1.09000 * 109.47254 * 65.44052 * 9 8 7 40 40 H 1.08996 * 109.47363 * 185.44242 * 9 8 7 41 41 H 1.08996 * 109.47187 * 305.43906 * 9 8 7 42 42 H 1.09000 * 109.47398 * 309.99935 * 10 8 7 43 43 H 1.09000 * 109.47273 * 69.99841 * 10 8 7 44 44 H 0.97009 * 119.99387 * 359.97438 * 13 11 10 45 45 H 1.09004 * 109.47214 * 299.99567 * 14 13 11 46 46 H 1.08996 * 109.47247 * 59.99731 * 14 13 11 47 47 H 0.97004 * 119.99951 * 180.02562 * 18 17 15 48 48 H 1.07996 * 119.89158 * 359.57643 * 25 24 23 49 49 H 1.08001 * 119.98465 * 180.02562 * 26 25 24 50 50 H 1.07999 * 119.94501 * 180.02562 * 27 26 25 51 51 H 1.08005 * 119.87807 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4671 1.4309 -0.2380 5 6 4.1875 0.9777 1.0386 6 1 3.8400 -0.0147 1.3256 7 6 5.6981 0.9475 0.7977 8 7 6.3804 0.5057 2.0212 9 6 7.7959 0.8981 2.0057 10 6 6.2382 -0.9443 2.2089 11 6 6.7305 -1.3239 3.5817 12 8 7.1574 -0.4704 4.3302 13 7 6.6965 -2.6117 3.9777 14 6 7.1745 -2.9805 5.3124 15 6 7.0287 -4.4681 5.5050 16 1 6.6211 -5.0778 4.7122 17 6 7.4157 -5.0507 6.6932 18 7 7.9125 -4.3083 7.6584 19 14 7.2356 -6.8946 6.9316 20 1 8.4758 -7.5756 6.4809 21 1 7.0043 -7.1876 8.3689 22 1 6.0833 -7.3865 6.1345 23 8 3.8809 1.9175 2.0739 24 6 2.5780 2.2947 2.1909 25 6 2.1730 2.9463 3.3473 26 6 0.8600 3.3513 3.4935 27 6 -0.0557 3.1065 2.4870 28 6 0.3387 2.4561 1.3348 29 6 1.6586 2.0442 1.1793 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.7653 2.4500 -0.4842 36 1 3.7269 0.7648 -1.0608 37 1 6.0433 1.9460 0.5295 38 1 5.9228 0.2553 -0.0139 39 1 7.8719 1.9851 2.0334 40 1 8.2995 0.4763 2.8755 41 1 8.2667 0.5240 1.0966 42 1 5.1889 -1.2224 2.1096 43 1 6.8257 -1.4677 1.4546 44 1 6.3546 -3.2943 3.3791 45 1 8.2237 -2.7021 5.4124 46 1 6.5864 -2.4576 6.0664 47 1 8.1852 -4.7182 8.4942 48 1 2.8866 3.1383 4.1349 49 1 0.5488 3.8585 4.3948 50 1 -1.0815 3.4240 2.6026 51 1 -0.3799 2.2666 0.5511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048262187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:26 Heat of formation + Delta-G solvation = -21.038187 kcal Electronic energy + Delta-G solvation = -31038.678560 eV Core-core repulsion = 26938.919496 eV Total energy + Delta-G solvation = -4099.759064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.46466 -39.20365 -37.92242 -37.02944 -36.42870 -34.12727 -32.33525 -32.13782 -31.13514 -30.58265 -28.90675 -28.31462 -26.70579 -25.79861 -23.90925 -23.29408 -22.70855 -22.55420 -21.42970 -20.02437 -19.61561 -18.23924 -17.35453 -16.91343 -16.61727 -16.00538 -15.62707 -15.58385 -15.36970 -15.09934 -15.05634 -14.65285 -14.46127 -14.27447 -14.08427 -13.94538 -13.64327 -13.44674 -12.96691 -12.80748 -12.52418 -12.46652 -12.33959 -12.16752 -12.01378 -11.98103 -11.91154 -11.75090 -11.57570 -11.31377 -11.12786 -11.08028 -10.98211 -10.87926 -10.75702 -10.31584 -9.54815 -9.40169 -9.00456 -8.73597 -8.48226 -8.25304 -8.09336 -7.85416 -6.17158 -4.24206 1.14693 1.30176 3.05119 3.23036 3.29104 3.29950 3.31523 3.38197 3.57835 3.63894 4.13641 4.32755 4.42155 4.51700 4.55565 4.65875 4.76106 4.88002 4.88666 4.95227 5.05092 5.12859 5.18737 5.19592 5.21534 5.25770 5.32017 5.34670 5.38240 5.48651 5.54625 5.57776 5.61276 5.64880 5.72416 5.80806 5.86558 6.07110 6.08155 6.25852 6.36941 6.47594 6.62768 6.85209 6.93866 7.03982 7.32327 7.39557 7.45366 7.52390 7.66955 7.96887 8.63341 8.78783 9.12854 9.42612 10.93043 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.002407 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.203176 B =11632.096349 C =12233.048741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.048 3.952 3 N -0.485 5.485 4 C 0.021 3.979 5 C 0.059 3.941 6 H 0.073 0.927 7 C 0.065 3.935 8 N -0.514 5.514 9 C 0.023 3.977 10 C 0.032 3.968 11 C 0.499 3.501 12 O -0.535 6.535 13 N -0.716 5.716 14 C 0.252 3.748 15 C -0.543 4.543 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 O -0.281 6.281 24 C 0.096 3.904 25 C -0.133 4.133 26 C -0.096 4.096 27 C -0.149 4.149 28 C -0.087 4.087 29 C 0.017 3.983 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.018 0.982 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.388 0.612 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.266 0.734 48 H 0.133 0.867 49 H 0.127 0.873 50 H 0.124 0.876 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 12.534 -19.485 27.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.077 4.077 3 N -0.202 5.202 4 C -0.107 4.107 5 C 0.000 4.000 6 H 0.091 0.909 7 C -0.064 4.064 8 N -0.238 5.238 9 C -0.124 4.124 10 C -0.099 4.099 11 C 0.283 3.717 12 O -0.412 6.412 13 N -0.365 5.365 14 C 0.131 3.869 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 O -0.194 6.194 24 C 0.048 3.952 25 C -0.152 4.152 26 C -0.115 4.115 27 C -0.167 4.167 28 C -0.106 4.106 29 C -0.079 4.079 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.036 0.964 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.221 0.779 45 H 0.044 0.956 46 H 0.044 0.956 47 H 0.076 0.924 48 H 0.150 0.850 49 H 0.145 0.855 50 H 0.142 0.858 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.921 13.624 -18.641 26.961 hybrid contribution 0.452 -2.287 -0.310 2.352 sum -13.469 11.337 -18.951 25.867 Atomic orbital electron populations 1.22123 0.94315 1.02233 1.03077 1.22274 0.97018 0.86987 1.01395 1.59358 1.13189 1.15670 1.32008 1.22969 0.86074 1.04237 0.97426 1.23134 0.96589 0.92172 0.88092 0.90939 1.22105 0.91033 1.01920 0.91348 1.61509 1.14715 1.12316 1.35215 1.22536 0.86974 1.01520 1.01393 1.22090 1.02120 0.89256 0.96417 1.20217 0.79834 0.83348 0.88323 1.90642 1.46500 1.49049 1.55025 1.46454 1.63515 1.06894 1.19640 1.19075 0.95158 0.95137 0.77520 1.21222 1.44032 0.92052 1.00865 0.91975 1.24954 0.94743 0.98769 0.95560 1.69976 1.41221 1.35679 1.05349 0.86421 0.78502 0.84492 0.77529 1.20474 1.20973 1.19763 1.86517 1.21441 1.58620 1.52801 1.19184 0.84744 0.98031 0.93227 1.20553 0.96724 1.01858 0.96096 1.20951 0.92253 0.99216 0.99051 1.20935 0.99813 1.01629 0.94353 1.20943 0.94145 0.97367 0.98155 1.18683 0.94844 1.04880 0.89488 0.91712 0.91888 0.91242 0.89988 0.94072 0.88727 0.88406 0.89358 0.92395 0.91426 0.88930 0.96389 0.89006 0.92415 0.77944 0.95626 0.95558 0.92434 0.84951 0.85463 0.85841 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.79 37.16 0.33 -0.85 16 2 C 0.05 0.41 5.32 -3.83 -0.02 0.39 16 3 N -0.49 -4.73 4.67 -170.82 -0.80 -5.53 16 4 C 0.02 0.19 5.32 -3.68 -0.02 0.17 16 5 C 0.06 0.65 2.87 -26.51 -0.08 0.57 16 6 H 0.07 0.84 5.55 -51.93 -0.29 0.55 16 7 C 0.06 0.67 4.71 -3.83 -0.02 0.66 16 8 N -0.51 -7.35 4.34 -244.38 -1.06 -8.41 16 9 C 0.02 0.32 9.16 60.06 0.55 0.87 16 10 C 0.03 0.47 5.27 -4.98 -0.03 0.44 16 11 C 0.50 10.02 7.47 -10.99 -0.08 9.94 16 12 O -0.53 -12.97 14.39 5.56 0.08 -12.89 16 13 N -0.72 -15.08 5.55 -61.48 -0.34 -15.43 16 14 C 0.25 6.72 5.43 -5.20 -0.03 6.69 16 15 C -0.54 -14.78 9.28 -34.44 -0.32 -15.09 16 16 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.88 -26.21 13.29 55.43 0.74 -25.47 16 19 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 O -0.28 -4.01 9.96 -20.19 -0.20 -4.22 16 24 C 0.10 1.28 6.47 -39.11 -0.25 1.02 16 25 C -0.13 -1.66 9.94 -39.40 -0.39 -2.05 16 26 C -0.10 -0.97 10.04 -39.60 -0.40 -1.37 16 27 C -0.15 -1.38 10.03 -39.64 -0.40 -1.77 16 28 C -0.09 -0.86 7.54 -39.31 -0.30 -1.15 16 29 C 0.02 0.20 5.05 -83.59 -0.42 -0.23 16 30 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.57 5.14 -51.93 -0.27 0.30 16 33 H 0.08 0.55 7.88 -51.93 -0.41 0.14 16 34 H 0.04 0.40 7.06 -51.93 -0.37 0.04 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 0.62 7.85 -51.93 -0.41 0.21 16 37 H 0.09 0.86 7.94 -51.93 -0.41 0.44 16 38 H 0.06 0.46 8.00 -51.93 -0.42 0.05 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.60 5.79 -51.93 -0.30 1.30 16 41 H 0.02 0.21 8.13 -51.93 -0.42 -0.22 16 42 H 0.09 1.18 6.63 -51.93 -0.34 0.84 16 43 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 44 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 45 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 49 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 50 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 51 H 0.13 1.09 6.38 -52.48 -0.33 0.75 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -34.08 402.88 -10.57 -44.65 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -8.07 Total: 5.50 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.97 Total: -0.10 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -1.46 Total: -54.84 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.12 Total: -17.11 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.08 -10.57 -44.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048262187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.608 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds