Wall clock time and date at job start Tue Mar 31 2020 05:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46908 * 109.46967 * 2 1 4 4 C 1.46904 * 110.99658 * 298.14672 * 3 2 1 5 5 C 1.50698 * 109.46897 * 292.87573 * 4 3 2 6 6 H 1.08002 * 120.00663 * 354.95793 * 5 4 3 7 7 C 1.37884 * 119.99751 * 174.95731 * 5 4 3 8 8 N 1.31513 * 119.99743 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99950 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46889 * 90.00218 * 9 7 5 11 11 H 1.48498 * 109.47065 * 210.00073 * 9 7 5 12 12 H 1.48504 * 109.47155 * 329.99915 * 9 7 5 13 13 C 1.46894 * 110.99989 * 62.09752 * 3 2 1 14 14 N 1.46498 * 109.46975 * 66.04678 * 13 3 2 15 15 N 1.40162 * 126.34200 * 269.95799 * 14 13 3 16 16 C 1.29433 * 108.14757 * 180.02562 * 15 14 13 17 17 N 1.37459 * 108.80498 * 359.73981 * 16 15 14 18 18 C 1.40283 * 125.84662 * 180.30499 * 17 16 15 19 19 C 1.38724 * 120.08441 * 65.14353 * 18 17 16 20 20 C 1.38189 * 119.98353 * 179.97438 * 19 18 17 21 21 C 1.38282 * 120.16890 * 0.02562 * 20 19 18 22 22 C 1.38241 * 120.17496 * 0.02562 * 21 20 19 23 23 C 1.38569 * 120.00900 * 359.70387 * 22 21 20 24 24 O 1.35956 * 120.08183 * 180.29022 * 23 22 21 25 25 C 1.42911 * 117.00015 * 0.26111 * 24 23 22 26 26 C 1.34819 * 108.31741 * 0.42763 * 17 16 15 27 27 S 1.71201 * 126.29682 * 179.84281 * 26 17 16 28 28 H 1.08994 * 109.46660 * 179.61493 * 1 2 3 29 29 H 1.08998 * 109.46891 * 299.61687 * 1 2 3 30 30 H 1.09004 * 109.46718 * 59.61767 * 1 2 3 31 31 H 1.08999 * 109.47116 * 239.99872 * 2 1 3 32 32 H 1.08998 * 109.47196 * 119.99427 * 2 1 3 33 33 H 1.08991 * 109.47165 * 52.87706 * 4 3 2 34 34 H 1.09001 * 109.46941 * 172.88165 * 4 3 2 35 35 H 0.97007 * 119.99600 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47288 * 306.04947 * 13 3 2 37 37 H 1.09002 * 109.46966 * 186.04353 * 13 3 2 38 38 H 1.08000 * 125.59672 * 180.02562 * 16 15 14 39 39 H 1.08002 * 120.00637 * 359.95680 * 19 18 17 40 40 H 1.07998 * 119.91433 * 179.97438 * 20 19 18 41 41 H 1.08002 * 119.91792 * 180.02562 * 21 20 19 42 42 H 1.07995 * 119.99202 * 179.97438 * 22 21 20 43 43 H 1.08993 * 109.46878 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.46876 * 299.99731 * 25 24 23 45 45 H 1.09000 * 109.46857 * 59.99493 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5852 2.0970 -1.2093 5 6 2.2650 1.5006 -2.4148 6 1 3.0117 0.7307 -2.2880 7 6 1.9336 1.9380 -3.6798 8 7 1.0247 2.8759 -3.8342 9 14 2.7768 1.1993 -5.1741 10 1 2.0035 0.0234 -5.6479 11 1 2.8462 2.2145 -6.2556 12 1 4.1510 0.7727 -4.8067 13 6 1.5901 2.0953 1.2119 14 7 2.2359 1.4973 2.3831 15 7 1.7355 0.4434 3.1599 16 6 2.5875 0.1978 4.1028 17 7 3.6514 1.0585 3.9740 18 6 4.7810 1.0986 4.8048 19 6 5.6546 0.0216 4.8431 20 6 6.7670 0.0635 5.6619 21 6 7.0122 1.1767 6.4447 22 6 6.1456 2.2533 6.4127 23 6 5.0309 2.2214 5.5901 24 8 4.1808 3.2817 5.5530 25 6 4.5007 4.3992 6.3844 26 6 3.4224 1.8596 2.9141 27 16 4.4510 3.1030 2.3425 28 1 -0.3632 -1.0276 -0.0069 29 1 -0.3633 0.5079 0.8934 30 1 -0.3633 0.5198 -0.8866 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 0.5048 2.0029 -1.3178 34 1 1.8517 3.1506 -1.1261 35 1 0.7919 3.1838 -4.7241 36 1 0.5077 2.0172 1.3144 37 1 1.8733 3.1452 1.1374 38 1 2.4820 -0.5621 4.8630 39 1 5.4652 -0.8494 4.2333 40 1 7.4462 -0.7757 5.6911 41 1 7.8831 1.2053 7.0828 42 1 6.3397 3.1210 7.0256 43 1 3.7439 5.1735 6.2594 44 1 4.5267 4.0809 7.4266 45 1 5.4758 4.7954 6.1011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048289320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:10 Heat of formation + Delta-G solvation = 115.137199 kcal Electronic energy + Delta-G solvation = -28534.410907 eV Core-core repulsion = 24682.050716 eV Total energy + Delta-G solvation = -3852.360191 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.74395 -40.36733 -37.88184 -37.43147 -34.98841 -32.82315 -32.25492 -30.77257 -30.11819 -29.46734 -27.75789 -27.31459 -25.28968 -24.01984 -23.36460 -22.73358 -22.25297 -22.03363 -19.88859 -19.02928 -17.92762 -16.95266 -16.56619 -16.35996 -16.13754 -15.95661 -15.70960 -15.32454 -14.95682 -14.89228 -14.77514 -14.50112 -14.11411 -13.85800 -13.11635 -13.03287 -12.58371 -12.46062 -12.19991 -12.11956 -11.88382 -11.63211 -11.51723 -11.40990 -11.23809 -11.10880 -10.91588 -10.87709 -10.76295 -10.59523 -10.44722 -10.09666 -9.82742 -9.35436 -9.26807 -8.54940 -8.41773 -7.44798 -7.24790 -7.07587 -6.00961 -4.01444 0.66837 1.03066 1.38634 1.56450 1.73125 2.65143 2.67182 2.95786 3.26042 3.34743 3.41317 3.47099 4.25884 4.41426 4.45182 4.46478 4.55196 4.75663 4.87455 4.90375 4.91664 4.96522 5.10117 5.16681 5.30178 5.35037 5.35201 5.51316 5.72654 5.76238 5.80943 5.86159 5.96691 6.05386 6.06517 6.21712 6.30712 6.37958 6.59401 6.63094 6.83940 7.07770 7.18653 7.29302 7.34003 7.76878 7.99688 8.10711 8.46366 9.04577 9.62021 11.09708 Molecular weight = 348.14amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.002866 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.811299 B = 9767.684181 C = 9951.360596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.061 3.939 3 N -0.539 5.539 4 C 0.197 3.803 5 C -0.502 4.502 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.898 3.102 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.305 3.695 14 N -0.361 5.361 15 N -0.271 5.271 16 C 0.240 3.760 17 N -0.450 5.450 18 C 0.087 3.913 19 C -0.060 4.060 20 C -0.151 4.151 21 C -0.061 4.061 22 C -0.204 4.204 23 C 0.171 3.829 24 O -0.295 6.295 25 C 0.029 3.971 26 C 0.480 3.520 27 S -0.556 6.556 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.009 0.991 34 H 0.033 0.967 35 H 0.261 0.739 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.235 0.765 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.101 0.899 44 H 0.053 0.947 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.165 -5.520 26.836 28.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.067 4.067 3 N -0.264 5.264 4 C 0.073 3.927 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.726 3.274 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.095 3.905 14 N -0.155 5.155 15 N -0.090 5.090 16 C -0.060 4.060 17 N -0.149 5.149 18 C -0.004 4.004 19 C -0.079 4.079 20 C -0.170 4.170 21 C -0.080 4.080 22 C -0.223 4.223 23 C 0.123 3.877 24 O -0.207 6.207 25 C -0.066 4.066 26 C 0.124 3.876 27 S -0.427 6.427 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.252 0.748 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.120 0.880 44 H 0.072 0.928 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.972 -4.843 25.645 26.773 hybrid contribution -0.204 -0.760 -0.111 0.794 sum 5.768 -5.602 25.534 26.770 Atomic orbital electron populations 1.22343 0.98850 1.01369 1.01844 1.21988 0.92479 0.90779 1.01462 1.62215 1.59774 1.02590 1.01793 1.19777 0.94877 0.94028 0.84013 1.21041 1.21846 1.21490 0.89679 0.91889 1.24945 0.95279 0.95212 0.98997 1.69948 1.31937 1.29007 1.22874 0.86489 0.80050 0.78653 0.82217 1.20829 1.21226 1.19733 1.22411 0.93755 0.96170 0.78154 1.49660 1.15143 1.26028 1.24659 1.77154 1.21936 1.05508 1.04356 1.26490 0.83850 0.96489 0.99136 1.43238 1.17546 1.29586 1.24527 1.16558 0.90395 0.96225 0.97267 1.20982 0.92359 0.97019 0.97578 1.20908 0.97854 0.99585 0.98610 1.21102 0.97804 0.92164 0.96889 1.21171 0.96098 1.01606 1.03435 1.18930 0.89890 0.86797 0.92123 1.86275 1.46987 1.24401 1.63000 1.23102 1.03036 0.87270 0.93209 1.23830 0.88382 0.91517 0.83896 1.93237 1.49417 1.26724 1.73285 0.93170 0.93674 0.91096 0.89754 0.93214 0.97292 0.94850 0.92896 0.91051 0.86190 0.74849 0.84562 0.84764 0.85020 0.84475 0.88043 0.92802 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.34 9.26 37.16 0.34 -2.99 16 2 C 0.06 1.22 5.78 -3.82 -0.02 1.20 16 3 N -0.54 -11.92 4.83 -239.98 -1.16 -13.08 16 4 C 0.20 5.08 4.53 -4.97 -0.02 5.06 16 5 C -0.50 -14.18 8.40 -34.44 -0.29 -14.47 16 6 H 0.06 1.80 7.38 -52.49 -0.39 1.42 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.30 5.88 5.73 -63.32 -0.36 5.51 16 14 N -0.36 -6.37 3.34 -64.99 -0.22 -6.58 16 15 N -0.27 -3.92 11.52 29.89 0.34 -3.58 16 16 C 0.24 2.67 12.55 -89.00 -1.12 1.55 16 17 N -0.45 -6.24 2.60 -62.81 -0.16 -6.40 16 18 C 0.09 1.04 5.38 -83.42 -0.45 0.59 16 19 C -0.06 -0.56 9.91 -39.42 -0.39 -0.95 16 20 C -0.15 -1.10 10.04 -39.58 -0.40 -1.50 16 21 C -0.06 -0.43 10.04 -39.56 -0.40 -0.83 16 22 C -0.20 -1.73 9.04 -39.46 -0.36 -2.08 16 23 C 0.17 1.98 6.37 -39.07 -0.25 1.73 16 24 O -0.30 -3.72 9.41 -19.60 -0.18 -3.90 16 25 C 0.03 0.24 9.81 101.05 0.99 1.23 16 26 C 0.48 8.68 7.40 -86.73 -0.64 8.04 16 27 S -0.56 -12.01 29.18 -107.50 -3.14 -15.15 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.76 6.34 -51.93 -0.33 0.43 16 30 H 0.07 1.45 6.28 -51.93 -0.33 1.12 16 31 H 0.08 1.83 6.99 -51.93 -0.36 1.47 16 32 H 0.05 0.94 6.74 -51.93 -0.35 0.59 16 33 H 0.01 0.25 6.00 -51.93 -0.31 -0.06 16 34 H 0.03 0.93 7.91 -51.93 -0.41 0.52 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.07 1.28 6.07 -51.93 -0.32 0.97 16 37 H 0.12 2.45 7.47 -51.93 -0.39 2.06 16 38 H 0.24 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.14 0.85 6.30 -52.49 -0.33 0.52 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.30 7.65 -51.93 -0.40 -0.10 16 45 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -36.35 384.34 -12.45 -48.80 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.98 Total: -0.68 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -3.46 Total: 3.61 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.46 Total: -55.51 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.18 Total: -3.90 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -12.01 SS G_CDS: -3.14 Total: -15.15 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.35 -12.45 -48.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048289320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.938 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds