Wall clock time and date at job start Tue Mar 31 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37953 * 120.07460 * 2 1 4 4 C 1.38365 * 120.15043 * 179.79011 * 3 2 1 5 5 C 1.38399 * 120.30616 * 0.46284 * 4 3 2 6 6 C 1.37911 * 120.15853 * 359.79197 * 5 4 3 7 7 C 1.39643 * 120.07810 * 180.27215 * 2 1 3 8 8 C 1.47665 * 120.15275 * 359.96030 * 7 2 1 9 9 N 1.30426 * 124.20539 * 4.11136 * 8 7 2 10 10 C 1.36426 * 109.09501 * 180.02562 * 9 8 7 11 11 C 1.37749 * 127.28574 * 180.02562 * 10 9 8 12 12 C 1.46679 * 119.99850 * 171.84992 * 11 10 9 13 13 C 1.40156 * 120.16118 * 139.36443 * 12 11 10 14 14 C 1.37859 * 119.93924 * 179.97438 * 13 12 11 15 15 C 1.38344 * 120.27047 * 0.02562 * 14 13 12 16 16 C 1.39043 * 120.32587 * 359.97438 * 15 14 13 17 17 O 1.35769 * 119.96903 * 180.02562 * 16 15 14 18 18 C 1.34829 * 117.00141 * 6.03036 * 17 16 15 19 19 H 1.07999 * 119.99946 * 5.41061 * 18 17 16 20 20 C 1.38654 * 120.00030 * 185.40465 * 18 17 16 21 21 N 1.31563 * 119.99764 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00167 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47077 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47262 * 120.00394 * 22 20 18 25 25 H 1.48501 * 109.47317 * 240.00475 * 22 20 18 26 26 C 1.38501 * 120.06120 * 359.74405 * 16 15 14 27 27 C 1.47585 * 105.42421 * 0.02562 * 10 9 8 28 28 O 1.21641 * 127.40000 * 179.97438 * 27 10 9 29 29 O 1.34697 * 124.20119 * 183.81934 * 8 7 2 30 30 H 1.09000 * 109.47585 * 261.85543 * 1 2 3 31 31 H 1.09001 * 109.47255 * 141.85350 * 1 2 3 32 32 H 1.09004 * 109.47327 * 21.85392 * 1 2 3 33 33 H 1.07994 * 119.92880 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.84221 * 180.21024 * 4 3 2 35 35 H 1.08000 * 119.91987 * 179.76937 * 5 4 3 36 36 H 1.07993 * 120.07726 * 179.97438 * 6 5 4 37 37 H 1.07999 * 120.00265 * 351.85229 * 11 10 9 38 38 H 1.07996 * 120.03361 * 359.95553 * 13 12 11 39 39 H 1.07998 * 119.86956 * 180.02562 * 14 13 12 40 40 H 1.08009 * 119.83275 * 179.97438 * 15 14 13 41 41 H 0.97002 * 119.99615 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.14128 * 180.27417 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1938 0.0000 4 6 3.5819 1.1956 0.0044 5 6 4.2819 0.0017 -0.0009 6 6 3.6037 -1.1991 -0.0062 7 6 2.2068 -1.2084 -0.0057 8 6 1.4737 -2.4901 -0.0109 9 7 0.1757 -2.5921 -0.0879 10 6 -0.1704 -3.9116 -0.0675 11 6 -1.4400 -4.4423 -0.1296 12 6 -1.6232 -5.8903 -0.2754 13 6 -2.6292 -6.5489 0.4447 14 6 -2.7976 -7.9099 0.3038 15 6 -1.9770 -8.6299 -0.5459 16 6 -0.9755 -7.9878 -1.2657 17 8 -0.1745 -8.7014 -2.0979 18 6 -0.4812 -10.0022 -2.2764 19 1 -1.3801 -10.4101 -1.8382 20 6 0.3574 -10.8162 -3.0225 21 7 1.4526 -10.3193 -3.5559 22 14 -0.0670 -12.6185 -3.2692 23 1 -1.3414 -12.9268 -2.5718 24 1 -0.2171 -12.8976 -4.7199 25 1 1.0196 -13.4637 -2.7122 26 6 -0.7979 -6.6201 -1.1389 27 6 1.1034 -4.6499 0.0353 28 8 1.2566 -5.8556 0.0837 29 8 2.0627 -3.6996 0.0576 30 1 -0.3634 -0.1456 1.0173 31 1 -0.3634 -0.8082 -0.6348 32 1 -0.3634 0.9538 -0.3825 33 1 1.6584 2.1291 0.0004 34 1 4.1181 2.1331 0.0078 35 1 5.3619 0.0105 -0.0012 36 1 4.1512 -2.1299 -0.0107 37 1 -2.3005 -3.7924 -0.0710 38 1 -3.2716 -5.9908 1.1096 39 1 -3.5734 -8.4162 0.8589 40 1 -2.1149 -9.6960 -0.6507 41 1 2.0395 -10.8888 -4.0776 42 1 -0.0233 -6.1194 -1.7007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048312243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:30 Heat of formation + Delta-G solvation = 23.926564 kcal Electronic energy + Delta-G solvation = -28687.571472 eV Core-core repulsion = 24565.800727 eV Total energy + Delta-G solvation = -4121.770745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.115 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.80017 -39.60704 -39.12547 -37.80244 -36.74978 -35.34034 -33.38107 -32.40447 -32.22188 -31.57944 -29.38549 -28.32126 -27.30037 -25.69090 -25.14080 -23.30555 -22.64696 -21.86994 -21.44048 -21.05563 -19.92342 -17.95837 -17.37368 -17.10542 -16.85756 -16.55979 -16.03749 -15.69039 -15.27430 -15.04053 -14.58130 -14.44090 -14.24855 -14.10242 -13.85074 -13.61879 -13.46943 -13.40909 -12.94212 -12.79734 -12.69204 -12.41644 -12.24649 -11.99759 -11.73414 -11.68284 -11.44902 -11.37599 -11.07149 -11.02565 -10.84552 -10.78853 -10.46330 -9.80702 -9.67503 -9.43894 -9.04566 -8.90921 -8.70520 -7.72195 -7.31133 -6.48018 -4.06424 -0.24068 0.85434 1.06331 2.02759 2.25861 2.38926 2.48654 3.03752 3.11091 3.12487 3.17639 3.49457 3.67092 3.91427 3.93157 4.43868 4.55220 4.56755 4.69744 4.77505 4.99519 5.06196 5.11432 5.15703 5.39619 5.40268 5.47934 5.51689 5.56822 5.65084 5.68714 5.72373 5.80673 5.98146 6.07275 6.09216 6.13193 6.17035 6.20651 6.39486 6.49040 6.62885 6.74461 6.92654 7.00611 7.21704 7.30977 7.37327 7.52616 7.62916 7.95026 8.96363 9.66012 10.69596 Molecular weight = 349.11amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.002379 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.503623 B =11768.278094 C =13094.719150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.025 4.025 3 C -0.131 4.131 4 C -0.091 4.091 5 C -0.133 4.133 6 C -0.073 4.073 7 C -0.042 4.042 8 C 0.324 3.676 9 N -0.461 5.461 10 C -0.117 4.117 11 C 0.106 3.894 12 C -0.079 4.079 13 C -0.174 4.174 14 C -0.084 4.084 15 C -0.210 4.210 16 C 0.144 3.856 17 O -0.172 6.172 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.857 5.857 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.112 4.112 27 C 0.470 3.530 28 O -0.389 6.389 29 O -0.296 6.296 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.152 0.848 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.131 0.869 41 H 0.271 0.729 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.183 21.499 7.831 22.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.026 4.026 3 C -0.148 4.148 4 C -0.110 4.110 5 C -0.151 4.151 6 C -0.092 4.092 7 C -0.044 4.044 8 C 0.112 3.888 9 N -0.191 5.191 10 C -0.223 4.223 11 C 0.087 3.913 12 C -0.080 4.080 13 C -0.193 4.193 14 C -0.102 4.102 15 C -0.229 4.229 16 C 0.091 3.909 17 O -0.076 6.076 18 C -0.467 4.467 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.491 5.491 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.131 4.131 27 C 0.310 3.690 28 O -0.268 6.268 29 O -0.199 6.199 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.170 0.830 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.148 0.852 41 H 0.080 0.920 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.224 21.215 7.513 22.539 hybrid contribution 0.467 -1.592 0.020 1.659 sum -0.757 19.623 7.533 21.033 Atomic orbital electron populations 1.21249 0.89596 1.03729 1.04020 1.20027 0.97166 0.90892 0.94558 1.21021 0.94211 0.97300 1.02318 1.21394 0.94303 0.98362 0.96900 1.21075 1.00378 0.91838 1.01817 1.21373 0.92439 0.99431 0.95999 1.17404 0.92323 0.86517 1.08130 1.23210 0.87306 0.84672 0.93581 1.71338 1.10324 1.17170 1.20262 1.21732 0.94936 0.89725 1.15899 1.22528 0.93547 0.94104 0.81144 1.18351 0.98584 0.90655 1.00433 1.20665 1.00007 0.94858 1.03794 1.20648 0.98304 0.93625 0.97600 1.21403 0.99197 1.01044 1.01297 1.19138 0.90677 0.91139 0.89983 1.84031 1.46722 1.23005 1.53816 1.21390 1.08624 0.82712 1.33973 0.88946 1.25331 0.94969 1.00194 0.96103 1.70064 1.11494 1.36420 1.31122 0.85629 0.78734 0.80425 0.78523 1.19040 1.20085 1.20073 1.20351 0.99329 0.91679 1.01782 1.22081 0.84723 0.86256 0.75934 1.91162 1.84475 1.08915 1.42281 1.85055 1.39064 1.16908 1.78912 0.90659 0.87416 0.92125 0.85120 0.85472 0.85157 0.84648 0.83043 0.86846 0.86805 0.85160 0.91952 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 8.89 36.00 0.32 -0.85 16 2 C -0.02 -0.24 5.92 -104.20 -0.62 -0.86 16 3 C -0.13 -1.00 9.66 -39.64 -0.38 -1.38 16 4 C -0.09 -0.63 10.04 -39.48 -0.40 -1.03 16 5 C -0.13 -1.04 10.03 -39.64 -0.40 -1.44 16 6 C -0.07 -0.74 9.69 -39.16 -0.38 -1.12 16 7 C -0.04 -0.50 5.87 -104.98 -0.62 -1.11 16 8 C 0.32 4.68 7.70 -14.30 -0.11 4.57 16 9 N -0.46 -6.64 7.68 -7.85 -0.06 -6.70 16 10 C -0.12 -1.90 6.84 -82.19 -0.56 -2.46 16 11 C 0.11 1.55 9.94 -36.35 -0.36 1.19 16 12 C -0.08 -1.42 5.38 -105.12 -0.57 -1.99 16 13 C -0.17 -2.87 9.80 -39.00 -0.38 -3.25 16 14 C -0.08 -1.48 10.02 -39.68 -0.40 -1.88 16 15 C -0.21 -4.52 9.13 -39.24 -0.36 -4.88 16 16 C 0.14 3.57 6.64 -39.19 -0.26 3.31 16 17 O -0.17 -5.04 9.75 -0.01 0.00 -5.04 16 18 C -0.39 -11.01 9.44 30.89 0.29 -10.72 16 19 H 0.09 2.38 5.29 -52.49 -0.28 2.10 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 22 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 C -0.11 -2.48 7.04 -38.84 -0.27 -2.76 16 27 C 0.47 8.94 8.05 34.54 0.28 9.21 16 28 O -0.39 -8.83 14.45 -18.83 -0.27 -9.10 16 29 O -0.30 -5.01 10.35 -21.53 -0.22 -5.23 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.11 1.17 5.59 -51.93 -0.29 0.88 16 32 H 0.06 0.42 8.02 -51.93 -0.42 0.01 16 33 H 0.13 0.70 8.05 -52.49 -0.42 0.27 16 34 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.14 1.33 7.83 -52.49 -0.41 0.92 16 37 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.13 2.78 5.70 -52.48 -0.30 2.49 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.12 2.68 6.58 -52.49 -0.35 2.33 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -33.48 366.13 -8.70 -42.19 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.13 Total: 4.02 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -5.27 Total: -16.44 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.70 Total: -31.49 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.49 Total: -19.38 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.48 -8.70 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048312243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.112 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds