Wall clock time and date at job start Tue Mar 31 2020 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37953 * 120.07460 * 2 1 4 4 C 1.38365 * 120.15043 * 179.79011 * 3 2 1 5 5 C 1.38399 * 120.30616 * 0.46284 * 4 3 2 6 6 C 1.37911 * 120.15853 * 359.79197 * 5 4 3 7 7 C 1.39643 * 120.07810 * 180.27215 * 2 1 3 8 8 C 1.47665 * 120.15275 * 359.96030 * 7 2 1 9 9 N 1.30426 * 124.20539 * 4.11136 * 8 7 2 10 10 C 1.36426 * 109.09501 * 180.02562 * 9 8 7 11 11 C 1.37749 * 127.28574 * 180.02562 * 10 9 8 12 12 C 1.46679 * 119.99850 * 171.84992 * 11 10 9 13 13 C 1.40156 * 120.16118 * 139.36443 * 12 11 10 14 14 C 1.37859 * 119.93924 * 179.97438 * 13 12 11 15 15 C 1.38344 * 120.27047 * 0.02562 * 14 13 12 16 16 C 1.39043 * 120.32587 * 359.97438 * 15 14 13 17 17 O 1.35769 * 119.96903 * 180.02562 * 16 15 14 18 18 C 1.34829 * 117.00141 * 6.03036 * 17 16 15 19 19 H 1.07999 * 119.99946 * 5.41061 * 18 17 16 20 20 C 1.38654 * 120.00030 * 185.40465 * 18 17 16 21 21 N 1.31563 * 119.99764 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00167 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47077 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47262 * 120.00394 * 22 20 18 25 25 H 1.48501 * 109.47317 * 240.00475 * 22 20 18 26 26 C 1.38501 * 120.06120 * 359.74405 * 16 15 14 27 27 C 1.47585 * 105.42421 * 0.02562 * 10 9 8 28 28 O 1.21641 * 127.40000 * 179.97438 * 27 10 9 29 29 O 1.34697 * 124.20119 * 183.81934 * 8 7 2 30 30 H 1.09000 * 109.47585 * 261.85543 * 1 2 3 31 31 H 1.09001 * 109.47255 * 141.85350 * 1 2 3 32 32 H 1.09004 * 109.47327 * 21.85392 * 1 2 3 33 33 H 1.07994 * 119.92880 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.84221 * 180.21024 * 4 3 2 35 35 H 1.08000 * 119.91987 * 179.76937 * 5 4 3 36 36 H 1.07993 * 120.07726 * 179.97438 * 6 5 4 37 37 H 1.07999 * 120.00265 * 351.85229 * 11 10 9 38 38 H 1.07996 * 120.03361 * 359.95553 * 13 12 11 39 39 H 1.07998 * 119.86956 * 180.02562 * 14 13 12 40 40 H 1.08009 * 119.83275 * 179.97438 * 15 14 13 41 41 H 0.97002 * 119.99615 * 179.97438 * 21 20 18 42 42 H 1.07994 * 120.14128 * 180.27417 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1938 0.0000 4 6 3.5819 1.1956 0.0044 5 6 4.2819 0.0017 -0.0009 6 6 3.6037 -1.1991 -0.0062 7 6 2.2068 -1.2084 -0.0057 8 6 1.4737 -2.4901 -0.0109 9 7 0.1757 -2.5921 -0.0879 10 6 -0.1704 -3.9116 -0.0675 11 6 -1.4400 -4.4423 -0.1296 12 6 -1.6232 -5.8903 -0.2754 13 6 -2.6292 -6.5489 0.4447 14 6 -2.7976 -7.9099 0.3038 15 6 -1.9770 -8.6299 -0.5459 16 6 -0.9755 -7.9878 -1.2657 17 8 -0.1745 -8.7014 -2.0979 18 6 -0.4812 -10.0022 -2.2764 19 1 -1.3801 -10.4101 -1.8382 20 6 0.3574 -10.8162 -3.0225 21 7 1.4526 -10.3193 -3.5559 22 14 -0.0670 -12.6185 -3.2692 23 1 -1.3414 -12.9268 -2.5718 24 1 -0.2171 -12.8976 -4.7199 25 1 1.0196 -13.4637 -2.7122 26 6 -0.7979 -6.6201 -1.1389 27 6 1.1034 -4.6499 0.0353 28 8 1.2566 -5.8556 0.0837 29 8 2.0627 -3.6996 0.0576 30 1 -0.3634 -0.1456 1.0173 31 1 -0.3634 -0.8082 -0.6348 32 1 -0.3634 0.9538 -0.3825 33 1 1.6584 2.1291 0.0004 34 1 4.1181 2.1331 0.0078 35 1 5.3619 0.0105 -0.0012 36 1 4.1512 -2.1299 -0.0107 37 1 -2.3005 -3.7924 -0.0710 38 1 -3.2716 -5.9908 1.1096 39 1 -3.5734 -8.4162 0.8589 40 1 -2.1149 -9.6960 -0.6507 41 1 2.0395 -10.8888 -4.0776 42 1 -0.0233 -6.1194 -1.7007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048312243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:29 Heat of formation + Delta-G solvation = 3.714166 kcal Electronic energy + Delta-G solvation = -28688.447947 eV Core-core repulsion = 24565.800727 eV Total energy + Delta-G solvation = -4122.647221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.115 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.10321 -40.88644 -40.32919 -39.34367 -38.43423 -36.64139 -34.47810 -34.22063 -33.23804 -32.58596 -31.04285 -29.64368 -28.08407 -27.41011 -26.63874 -24.31739 -24.05035 -23.04639 -22.96740 -21.98328 -21.28980 -19.59022 -19.00061 -18.48398 -18.33873 -17.71608 -17.22591 -16.90936 -16.46855 -16.34706 -16.13841 -15.77670 -15.61919 -15.51569 -15.09519 -14.87995 -14.71042 -14.48259 -14.26284 -14.08037 -13.93019 -13.62480 -13.51960 -13.35311 -13.00696 -12.93341 -12.70556 -12.63215 -12.41468 -12.38271 -12.14117 -12.09909 -12.00740 -11.34116 -11.06080 -10.90238 -10.67228 -9.95041 -9.70108 -9.22234 -8.88910 -8.50575 -6.20017 -1.45130 -0.09262 0.40102 0.50888 0.66543 1.17301 1.23203 1.31507 1.40868 1.51213 1.76010 2.14228 2.52379 2.63154 2.76347 2.78925 3.09830 3.31861 3.69143 3.88635 3.89810 3.97533 4.09969 4.16268 4.22644 4.30482 4.36574 4.42834 4.44917 4.58893 4.63106 4.74905 4.83024 4.86792 4.96206 5.01708 5.04176 5.06055 5.11995 5.39353 5.44195 5.47927 5.51245 5.54574 5.62674 5.66624 5.92069 5.96544 5.97181 6.05243 6.28130 6.92945 7.75002 8.73587 Molecular weight = 349.11amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.002379 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.503623 B =11768.278094 C =13094.719150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.031 4.031 3 C -0.128 4.128 4 C -0.078 4.078 5 C -0.133 4.133 6 C -0.090 4.090 7 C -0.074 4.074 8 C 0.322 3.678 9 N -0.451 5.451 10 C -0.124 4.124 11 C 0.126 3.874 12 C -0.078 4.078 13 C -0.137 4.137 14 C -0.080 4.080 15 C -0.215 4.215 16 C 0.101 3.899 17 O -0.237 6.237 18 C -0.412 4.412 19 H 0.107 0.893 20 C -0.029 4.029 21 N -0.925 5.925 22 Si 1.024 2.976 23 H -0.246 1.246 24 H -0.267 1.267 25 H -0.270 1.270 26 C -0.135 4.135 27 C 0.458 3.542 28 O -0.444 6.444 29 O -0.308 6.308 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.124 0.876 37 H 0.210 0.790 38 H 0.174 0.826 39 H 0.162 0.838 40 H 0.125 0.875 41 H 0.272 0.728 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 24.980 10.162 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.033 4.033 3 C -0.145 4.145 4 C -0.096 4.096 5 C -0.151 4.151 6 C -0.110 4.110 7 C -0.076 4.076 8 C 0.110 3.890 9 N -0.180 5.180 10 C -0.230 4.230 11 C 0.107 3.893 12 C -0.079 4.079 13 C -0.155 4.155 14 C -0.097 4.097 15 C -0.234 4.234 16 C 0.051 3.949 17 O -0.144 6.144 18 C -0.488 4.488 19 H 0.124 0.876 20 C -0.225 4.225 21 N -0.563 5.563 22 Si 0.842 3.158 23 H -0.169 1.169 24 H -0.192 1.192 25 H -0.196 1.196 26 C -0.155 4.155 27 C 0.301 3.699 28 O -0.327 6.327 29 O -0.212 6.212 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.180 0.820 34 H 0.181 0.819 35 H 0.171 0.829 36 H 0.142 0.858 37 H 0.226 0.774 38 H 0.192 0.808 39 H 0.180 0.820 40 H 0.143 0.857 41 H 0.081 0.919 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.302 24.771 9.887 27.016 hybrid contribution 1.353 -2.186 -0.469 2.614 sum -2.949 22.584 9.418 24.647 Atomic orbital electron populations 1.21212 0.89108 1.04308 1.03710 1.20259 0.97736 0.90852 0.94430 1.21412 0.94750 0.97478 1.00894 1.21862 0.94294 0.99292 0.94180 1.21397 1.01664 0.91250 1.00749 1.21466 0.92151 1.00323 0.97028 1.17632 0.92976 0.85829 1.11124 1.24024 0.87604 0.84569 0.92755 1.71442 1.10024 1.15324 1.21228 1.21893 0.94286 0.90039 1.16745 1.22911 0.94547 0.92706 0.79115 1.18727 0.97711 0.92423 0.99019 1.21408 0.98077 0.94618 1.01370 1.21196 0.98034 0.94308 0.96195 1.21601 0.98923 1.01263 1.01628 1.19719 0.91845 0.92108 0.91232 1.83994 1.49439 1.23840 1.57137 1.21926 1.09493 0.82938 1.34469 0.87604 1.26729 0.94628 1.05660 0.95530 1.70235 1.13648 1.38636 1.33782 0.84467 0.79213 0.73241 0.78848 1.16860 1.19222 1.19561 1.20360 1.00255 0.91244 1.03594 1.22733 0.86329 0.86033 0.74818 1.91133 1.85511 1.11115 1.44986 1.85015 1.39575 1.17932 1.78672 0.90568 0.89380 0.89634 0.82044 0.81882 0.82863 0.85807 0.77357 0.80843 0.82037 0.85681 0.91900 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.89 71.23 0.63 -1.37 16 2 C -0.03 -0.55 5.92 -19.59 -0.12 -0.66 16 3 C -0.13 -1.48 9.66 22.23 0.21 -1.26 16 4 C -0.08 -0.78 10.04 22.34 0.22 -0.55 16 5 C -0.13 -1.80 10.03 22.23 0.22 -1.57 16 6 C -0.09 -1.83 9.69 22.54 0.22 -1.62 16 7 C -0.07 -1.73 5.87 -20.10 -0.12 -1.85 16 8 C 0.32 9.61 7.70 87.39 0.67 10.28 16 9 N -0.45 -12.83 7.68 -293.06 -2.25 -15.08 16 10 C -0.12 -4.01 6.84 40.78 0.28 -3.73 16 11 C 0.13 3.35 9.94 24.36 0.24 3.60 16 12 C -0.08 -2.68 5.38 -20.19 -0.11 -2.79 16 13 C -0.14 -3.84 9.80 22.65 0.22 -3.62 16 14 C -0.08 -2.53 10.02 22.21 0.22 -2.31 16 15 C -0.21 -9.37 9.13 22.49 0.21 -9.16 16 16 C 0.10 5.33 6.64 22.53 0.15 5.48 16 17 O -0.24 -15.24 9.75 -22.95 -0.22 -15.46 16 18 C -0.41 -24.96 9.44 67.92 0.64 -24.32 16 19 H 0.11 5.76 5.29 -2.91 -0.02 5.74 16 20 C -0.03 -1.70 5.49 84.83 0.47 -1.23 16 21 N -0.92 -59.86 13.67 21.61 0.30 -59.57 16 22 Si 1.02 44.31 29.55 68.60 2.03 46.33 16 23 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 C -0.14 -6.35 7.04 22.75 0.16 -6.19 16 27 C 0.46 18.69 8.05 70.29 0.57 19.26 16 28 O -0.44 -22.13 14.45 18.85 0.27 -21.86 16 29 O -0.31 -11.30 10.35 9.17 0.09 -11.21 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.77 5.59 -2.39 -0.01 1.75 16 32 H 0.08 0.89 8.02 -2.38 -0.02 0.87 16 33 H 0.16 0.88 8.05 -2.91 -0.02 0.86 16 34 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 35 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.12 2.68 7.83 -2.91 -0.02 2.66 16 37 H 0.21 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 39 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 40 H 0.13 5.47 5.70 -2.91 -0.02 5.46 16 41 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 42 H 0.09 4.44 6.58 -2.91 -0.02 4.42 16 Total: -1.00 -86.79 366.13 6.30 -80.50 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 1.08 Total: 19.97 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 5.00 Total: -23.62 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.95 Total: -74.65 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: 0.14 Total: -48.53 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -86.79 6.30 -80.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048312243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.211 kcal (2) G-P(sol) polarization free energy of solvation -86.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds