Wall clock time and date at job start Tue Mar 31 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86808 * 119.99888 * 2 1 4 4 H 1.48498 * 109.47143 * 269.99948 * 3 2 1 5 5 H 1.48497 * 109.47033 * 30.00248 * 3 2 1 6 6 H 1.48500 * 109.46734 * 149.99882 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00244 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00237 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47324 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99944 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99872 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46840 * 179.97438 * 14 13 11 16 16 N 1.46499 * 109.46840 * 179.97438 * 15 14 13 17 17 C 1.39138 * 120.00009 * 180.02562 * 16 15 14 18 18 N 1.32378 * 119.69590 * 359.72323 * 17 16 15 19 19 C 1.31971 * 121.64500 * 179.74870 * 18 17 16 20 20 C 1.38152 * 120.86297 * 0.53549 * 19 18 17 21 21 Cl 1.73595 * 120.34571 * 179.76132 * 20 19 18 22 22 C 1.38937 * 119.31036 * 359.73897 * 20 19 18 23 23 C 1.38425 * 118.48403 * 359.97438 * 22 20 19 24 24 Cl 1.73598 * 120.45430 * 179.97438 * 23 22 20 25 25 H 0.97007 * 120.00127 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47573 * 59.99523 * 10 9 7 27 27 H 1.09002 * 109.46856 * 300.00046 * 10 9 7 28 28 H 0.97005 * 119.99680 * 359.97438 * 13 11 10 29 29 H 1.09001 * 109.46813 * 60.00258 * 14 13 11 30 30 H 1.08992 * 109.47397 * 300.00319 * 14 13 11 31 31 H 1.09002 * 109.47398 * 300.00326 * 15 14 13 32 32 H 1.09001 * 109.47194 * 60.00507 * 15 14 13 33 33 H 0.97000 * 120.00420 * 0.02562 * 16 15 14 34 34 H 1.08006 * 119.56482 * 180.25184 * 19 18 17 35 35 H 1.07996 * 120.75823 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0018 14 6 2.3304 -7.7151 -0.0019 15 6 3.5024 -8.6985 -0.0033 16 7 2.9887 -10.0704 -0.0027 17 6 3.8732 -11.1445 -0.0032 18 7 5.1777 -10.9198 -0.0098 19 6 6.0508 -11.9094 -0.0057 20 6 5.6304 -13.2254 -0.0053 21 17 6.7906 -14.5167 -0.0060 22 6 4.2694 -13.5046 -0.0038 23 6 3.3782 -12.4454 -0.0022 24 17 1.6666 -12.7357 -0.0011 25 1 -0.4851 0.8401 0.0004 26 1 3.1245 -3.7313 0.8894 27 1 3.1244 -3.7313 -0.8905 28 1 3.8009 -6.1834 -0.0022 29 1 1.7214 -7.8749 -0.8916 30 1 1.7222 -7.8753 0.8883 31 1 4.1103 -8.5381 -0.8937 32 1 4.1118 -8.5388 0.8863 33 1 2.0319 -10.2301 -0.0020 34 1 7.1078 -11.6875 -0.0072 35 1 3.9149 -14.5247 -0.0031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048782828.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:21 Heat of formation + Delta-G solvation = -12.961679 kcal Electronic energy + Delta-G solvation = -21458.763964 eV Core-core repulsion = 17669.740453 eV Total energy + Delta-G solvation = -3789.023511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 349.016 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.95730 -39.30027 -37.45938 -37.10831 -36.59768 -34.43376 -32.81751 -32.45007 -31.22413 -29.53824 -27.56419 -25.51041 -24.62935 -23.44517 -22.47192 -20.51129 -18.69006 -17.94868 -17.52693 -17.31283 -16.34873 -16.15916 -15.89488 -15.35377 -15.31020 -14.84116 -14.81192 -14.45582 -14.09998 -13.80702 -13.47827 -13.20685 -13.07362 -12.73187 -12.59214 -12.25938 -12.18328 -11.93633 -11.73563 -11.46931 -11.08026 -11.04547 -10.78382 -10.52348 -10.24870 -10.16220 -9.84458 -9.52902 -9.10239 -9.02944 -8.27076 -8.26702 -6.52987 -6.23760 -3.94769 0.35431 0.55161 1.33716 1.71412 2.35431 3.00698 3.02940 3.06240 3.21208 3.27249 3.31695 3.65907 3.86230 4.14428 4.18246 4.20349 4.39104 4.55574 4.77340 4.88259 5.08777 5.11603 5.12575 5.22345 5.47103 5.57084 5.58449 5.74590 5.84917 6.09916 6.35013 6.47021 6.60237 7.41448 7.56612 7.58469 8.33137 8.50607 9.21671 10.83636 Molecular weight = 349.02amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.001546 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.410183 B =18108.706488 C =19175.367491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.515 6.515 13 N -0.736 5.736 14 C 0.109 3.891 15 C 0.119 3.881 16 N -0.707 5.707 17 C 0.426 3.574 18 N -0.512 5.512 19 C 0.176 3.824 20 C -0.146 4.146 21 Cl -0.054 7.054 22 C -0.012 4.012 23 C -0.149 4.149 24 Cl -0.046 7.046 25 H 0.269 0.731 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.401 0.599 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.416 0.584 34 H 0.173 0.827 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.942 -30.346 0.001 32.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.389 6.389 13 N -0.391 5.391 14 C -0.016 4.016 15 C -0.005 4.005 16 N -0.340 5.340 17 C 0.187 3.813 18 N -0.230 5.230 19 C 0.016 3.984 20 C -0.178 4.178 21 Cl -0.025 7.025 22 C -0.038 4.038 23 C -0.184 4.184 24 Cl -0.018 7.018 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.235 0.765 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.255 0.745 34 H 0.190 0.810 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 11.031 -29.614 -0.002 31.602 hybrid contribution 1.714 0.204 -0.003 1.726 sum 12.745 -29.410 -0.005 32.053 Atomic orbital electron populations 1.70016 1.05962 1.27489 1.46797 1.24993 0.95030 0.99047 0.94493 0.86162 0.79412 0.81531 0.78362 1.20258 1.20742 1.19680 1.22865 0.94931 0.91600 1.59050 0.90864 1.85407 1.04835 0.96373 1.96738 1.23528 1.06684 0.95053 1.05110 1.20335 0.86432 0.86222 0.74980 1.90711 1.15365 1.85531 1.47287 1.45777 1.10243 1.04746 1.78384 1.21308 0.95625 0.81484 1.03218 1.21479 0.96151 0.79425 1.03456 1.44540 1.07786 1.03300 1.78348 1.18086 0.88118 0.85396 0.89696 1.67576 0.99887 1.34576 1.20952 1.22600 0.99737 0.85725 0.90298 1.21568 0.90626 0.90898 1.14714 1.98381 1.57985 1.48822 1.97321 1.21168 0.90313 0.99565 0.92773 1.21116 0.86954 0.93080 1.17202 1.98390 1.10164 1.95956 1.97271 0.92160 0.89042 0.89052 0.76461 0.90943 0.90935 0.90441 0.90458 0.74544 0.81029 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.10 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 11 C 0.53 9.50 7.85 -10.98 -0.09 9.42 16 12 O -0.52 -11.32 15.86 5.56 0.09 -11.23 16 13 N -0.74 -8.91 5.56 -60.30 -0.33 -9.25 16 14 C 0.11 1.11 5.79 -4.04 -0.02 1.08 16 15 C 0.12 0.94 5.81 -4.04 -0.02 0.91 16 16 N -0.71 -5.59 5.67 -60.37 -0.34 -5.93 16 17 C 0.43 3.60 7.48 -154.89 -1.16 2.45 16 18 N -0.51 -4.37 9.57 -12.36 -0.12 -4.49 16 19 C 0.18 1.19 10.97 -17.52 -0.19 1.00 16 20 C -0.15 -0.95 6.34 -39.35 -0.25 -1.20 16 21 Cl -0.05 -0.32 28.98 -51.86 -1.50 -1.82 16 22 C -0.01 -0.08 9.77 -39.25 -0.38 -0.46 16 23 C -0.15 -1.13 6.36 -39.16 -0.25 -1.38 16 24 Cl -0.05 -0.33 27.62 -51.86 -1.43 -1.76 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 26 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 27 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 28 H 0.40 3.64 8.47 -40.82 -0.35 3.30 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.42 3.02 7.13 -40.82 -0.29 2.73 16 34 H 0.17 0.76 8.06 -52.48 -0.42 0.33 16 35 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -34.14 356.13 -10.29 -44.43 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -3.56 Total: 1.28 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -1.95 Total: -3.75 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.06 Total: -44.88 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -2.94 Total: -3.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.14 -10.29 -44.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048782828.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.466 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds