Wall clock time and date at job start Tue Mar 31 2020 05:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86808 * 119.99888 * 2 1 4 4 H 1.48498 * 109.47143 * 269.99948 * 3 2 1 5 5 H 1.48497 * 109.47033 * 30.00248 * 3 2 1 6 6 H 1.48500 * 109.46734 * 149.99882 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00244 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00237 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47324 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99944 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99872 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46840 * 179.97438 * 14 13 11 16 16 N 1.46499 * 109.46840 * 179.97438 * 15 14 13 17 17 C 1.39138 * 120.00009 * 180.02562 * 16 15 14 18 18 N 1.32378 * 119.69590 * 359.72323 * 17 16 15 19 19 C 1.31971 * 121.64500 * 179.74870 * 18 17 16 20 20 C 1.38152 * 120.86297 * 0.53549 * 19 18 17 21 21 Cl 1.73595 * 120.34571 * 179.76132 * 20 19 18 22 22 C 1.38937 * 119.31036 * 359.73897 * 20 19 18 23 23 C 1.38425 * 118.48403 * 359.97438 * 22 20 19 24 24 Cl 1.73598 * 120.45430 * 179.97438 * 23 22 20 25 25 H 0.97007 * 120.00127 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47573 * 59.99523 * 10 9 7 27 27 H 1.09002 * 109.46856 * 300.00046 * 10 9 7 28 28 H 0.97005 * 119.99680 * 359.97438 * 13 11 10 29 29 H 1.09001 * 109.46813 * 60.00258 * 14 13 11 30 30 H 1.08992 * 109.47397 * 300.00319 * 14 13 11 31 31 H 1.09002 * 109.47398 * 300.00326 * 15 14 13 32 32 H 1.09001 * 109.47194 * 60.00507 * 15 14 13 33 33 H 0.97000 * 120.00420 * 0.02562 * 16 15 14 34 34 H 1.08006 * 119.56482 * 180.25184 * 19 18 17 35 35 H 1.07996 * 120.75823 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0018 14 6 2.3304 -7.7151 -0.0019 15 6 3.5024 -8.6985 -0.0033 16 7 2.9887 -10.0704 -0.0027 17 6 3.8732 -11.1445 -0.0032 18 7 5.1777 -10.9198 -0.0098 19 6 6.0508 -11.9094 -0.0057 20 6 5.6304 -13.2254 -0.0053 21 17 6.7906 -14.5167 -0.0060 22 6 4.2694 -13.5046 -0.0038 23 6 3.3782 -12.4454 -0.0022 24 17 1.6666 -12.7357 -0.0011 25 1 -0.4851 0.8401 0.0004 26 1 3.1245 -3.7313 0.8894 27 1 3.1244 -3.7313 -0.8905 28 1 3.8009 -6.1834 -0.0022 29 1 1.7214 -7.8749 -0.8916 30 1 1.7222 -7.8753 0.8883 31 1 4.1103 -8.5381 -0.8937 32 1 4.1118 -8.5388 0.8863 33 1 2.0319 -10.2301 -0.0020 34 1 7.1078 -11.6875 -0.0072 35 1 3.9149 -14.5247 -0.0031 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048782828.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:20 Heat of formation + Delta-G solvation = -36.209689 kcal Electronic energy + Delta-G solvation = -21459.772074 eV Core-core repulsion = 17669.740453 eV Total energy + Delta-G solvation = -3790.031620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 349.016 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51049 -40.64391 -38.04782 -37.68149 -37.26367 -35.48210 -34.57600 -33.35426 -32.18479 -30.66199 -28.49202 -27.61638 -25.25133 -24.08962 -23.16523 -21.83680 -19.87586 -19.24116 -18.28579 -17.89140 -17.66234 -17.04026 -17.02986 -16.86739 -16.22851 -16.00798 -15.83256 -15.42605 -15.35725 -14.72474 -14.56639 -14.32852 -13.96927 -13.90115 -13.45645 -13.20552 -13.15730 -12.93651 -12.88644 -12.68931 -12.59689 -12.49926 -11.98718 -11.72649 -11.13596 -11.09456 -11.05181 -10.79128 -10.69897 -10.26857 -10.19772 -8.83204 -8.65890 -8.33996 -6.11943 -0.17311 0.01422 0.80911 1.18044 1.25992 1.43308 1.45176 1.55887 1.58622 1.80035 2.27932 2.46911 2.48255 3.00404 3.28192 3.33489 3.61052 3.67060 3.69060 4.00833 4.01604 4.05573 4.32430 4.36232 4.39111 4.53332 4.73654 4.82658 4.82868 5.06500 5.32967 5.43081 5.79025 6.02322 6.20703 6.45181 6.84724 7.07610 7.20293 8.75118 Molecular weight = 349.02amu Principal moments of inertia in cm(-1) A = 0.025625 B = 0.001546 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.410183 B =18108.706488 C =19175.367491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.537 3.463 12 O -0.564 6.564 13 N -0.709 5.709 14 C 0.112 3.888 15 C 0.135 3.865 16 N -0.710 5.710 17 C 0.413 3.587 18 N -0.527 5.527 19 C 0.173 3.827 20 C -0.145 4.145 21 Cl -0.047 7.047 22 C -0.011 4.011 23 C -0.156 4.156 24 Cl -0.047 7.047 25 H 0.271 0.729 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.420 0.580 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.417 0.583 34 H 0.194 0.806 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.632 -31.065 0.002 34.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.364 5.364 14 C -0.013 4.013 15 C 0.010 3.990 16 N -0.343 5.343 17 C 0.175 3.825 18 N -0.245 5.245 19 C 0.014 3.986 20 C -0.177 4.177 21 Cl -0.019 7.019 22 C -0.037 4.037 23 C -0.191 4.191 24 Cl -0.018 7.018 25 H 0.080 0.920 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.258 0.742 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.256 0.744 34 H 0.210 0.790 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 13.786 -30.382 -0.001 33.364 hybrid contribution 0.963 0.229 -0.005 0.990 sum 14.748 -30.153 -0.006 33.567 Atomic orbital electron populations 1.70182 1.07974 1.28584 1.48040 1.26119 0.95950 1.03311 0.93760 0.84959 0.78226 0.76061 0.78770 1.19348 1.20400 1.18142 1.23215 0.95409 0.91976 1.58810 0.89778 1.85585 1.10606 0.99297 1.97069 1.23370 1.03577 0.94053 1.07095 1.20044 0.86121 0.86631 0.74968 1.90702 1.17443 1.86053 1.50008 1.45447 1.10620 1.04431 1.75876 1.21359 0.96574 0.80551 1.02773 1.21285 0.94807 0.78914 1.03978 1.44496 1.07914 1.03177 1.78738 1.18220 0.88329 0.85694 0.90252 1.67587 1.00020 1.35360 1.21567 1.22968 1.00501 0.85599 0.89551 1.21621 0.90760 0.91107 1.14254 1.98387 1.57713 1.48497 1.97268 1.21383 0.90281 1.00121 0.91962 1.21166 0.87132 0.93120 1.17665 1.98389 1.10198 1.95930 1.97307 0.92023 0.86940 0.86929 0.74233 0.91459 0.91446 0.89885 0.89894 0.74383 0.78972 0.81351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.62 13.22 21.65 0.29 -55.33 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.13 29.55 68.60 2.03 45.16 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.55 -30.77 9.50 67.95 0.65 -30.12 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 10 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 11 C 0.54 18.67 7.85 87.66 0.69 19.36 16 12 O -0.56 -25.17 15.86 -3.01 -0.05 -25.22 16 13 N -0.71 -15.82 5.56 -463.07 -2.57 -18.39 16 14 C 0.11 2.14 5.79 86.38 0.50 2.64 16 15 C 0.13 1.87 5.81 86.38 0.50 2.37 16 16 N -0.71 -10.37 5.67 -344.92 -1.95 -12.33 16 17 C 0.41 6.46 7.48 133.04 1.00 7.45 16 18 N -0.53 -8.10 9.57 -193.02 -1.85 -9.94 16 19 C 0.17 2.02 10.97 84.65 0.93 2.95 16 20 C -0.15 -1.64 6.34 22.42 0.14 -1.50 16 21 Cl -0.05 -0.48 28.98 -2.72 -0.08 -0.56 16 22 C -0.01 -0.13 9.77 22.48 0.22 0.09 16 23 C -0.16 -2.18 6.36 22.54 0.14 -2.04 16 24 Cl -0.05 -0.63 27.62 -2.72 -0.08 -0.71 16 25 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 26 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 27 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 28 H 0.42 6.37 8.47 -92.70 -0.79 5.58 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.42 5.74 7.13 -92.71 -0.66 5.08 16 34 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -75.44 356.13 -0.04 -75.47 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -0.28 Total: 13.39 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 5.67 Total: -2.05 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -6.09 Total: -95.99 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.05 Total: -25.22 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.15 Total: -1.26 kcal Total: -75.44 -0.04 -75.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048782828.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.263 kcal (2) G-P(sol) polarization free energy of solvation -75.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds