Wall clock time and date at job start Tue Mar 31 2020 06:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99956 * 2 1 4 4 H 1.48498 * 109.47029 * 275.40598 * 3 2 1 5 5 H 1.48499 * 109.47403 * 35.40404 * 3 2 1 6 6 H 1.48498 * 109.47161 * 155.40640 * 3 2 1 7 7 C 1.38808 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00314 * 336.78533 * 7 2 1 9 9 N 1.36938 * 120.00016 * 156.78687 * 7 2 1 10 10 C 1.46499 * 120.00071 * 143.23991 * 9 7 2 11 11 C 1.50706 * 109.47095 * 269.99689 * 10 9 7 12 12 N 1.31127 * 126.54563 * 90.00144 * 11 10 9 13 13 C 1.34496 * 105.61206 * 179.97438 * 12 11 10 14 14 C 1.50702 * 126.28797 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46877 * 90.00429 * 14 13 12 16 16 C 1.38237 * 119.99748 * 269.72411 * 15 14 13 17 17 C 1.38232 * 119.99623 * 179.76380 * 16 15 14 18 18 C 1.38237 * 120.00212 * 0.51504 * 17 16 15 19 19 C 1.38231 * 119.99931 * 359.73934 * 18 17 16 20 20 C 1.38228 * 120.00107 * 90.00104 * 15 14 13 21 21 N 1.29947 * 107.42643 * 0.02562 * 13 12 11 22 22 O 1.21311 * 110.24727 * 359.70606 * 21 13 12 23 23 C 1.46504 * 119.99893 * 323.23792 * 9 7 2 24 24 C 1.50696 * 109.46987 * 268.75147 * 23 9 7 25 25 C 1.38230 * 120.00003 * 265.45064 * 24 23 9 26 26 C 1.38242 * 119.99769 * 180.32680 * 25 24 23 27 27 C 1.38229 * 119.99999 * 359.95668 * 26 25 24 28 28 C 1.38237 * 120.00280 * 0.02562 * 27 26 25 29 29 C 1.38233 * 119.99767 * 0.02562 * 28 27 26 30 30 H 0.96998 * 120.00221 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47242 * 29.99821 * 10 9 7 32 32 H 1.09001 * 109.46813 * 150.00090 * 10 9 7 33 33 H 1.08997 * 109.47222 * 210.00107 * 14 13 12 34 34 H 1.08994 * 109.47054 * 330.00538 * 14 13 12 35 35 H 1.08003 * 120.00229 * 359.97438 * 16 15 14 36 36 H 1.08007 * 119.99703 * 180.22857 * 17 16 15 37 37 H 1.08003 * 119.99978 * 179.72044 * 18 17 16 38 38 H 1.07997 * 120.00095 * 179.97438 * 19 18 17 39 39 H 1.07999 * 120.00150 * 359.97438 * 20 15 14 40 40 H 1.09001 * 109.46961 * 148.74775 * 23 9 7 41 41 H 1.08999 * 109.46590 * 28.75642 * 23 9 7 42 42 H 1.08001 * 120.00177 * 0.28356 * 25 24 23 43 43 H 1.08004 * 119.99652 * 179.97438 * 26 25 24 44 44 H 1.08005 * 119.99939 * 180.02562 * 27 26 25 45 45 H 1.07999 * 120.00057 * 179.97438 * 28 27 26 46 46 H 1.07999 * 119.99750 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3834 2.1123 -1.3938 5 1 1.5094 2.6170 0.8111 6 1 3.6002 1.4099 0.5827 7 6 2.0102 -1.2021 0.0005 8 1 1.5358 -2.0995 0.3696 9 7 3.2965 -1.2503 -0.4669 10 6 4.2793 -2.1219 0.1816 11 6 4.9751 -1.3629 1.2820 12 7 4.6012 -1.2887 2.5366 13 6 5.5165 -0.5110 3.1418 14 6 5.5325 -0.1197 4.5970 15 6 6.3163 -1.1393 5.3828 16 6 5.6733 -2.2346 5.9285 17 6 6.3930 -3.1723 6.6450 18 6 7.7539 -3.0093 6.8249 19 6 8.3960 -1.9113 6.2836 20 6 7.6771 -0.9763 5.5625 21 7 6.3840 -0.1581 2.2410 22 8 6.0941 -0.6415 1.1668 23 6 3.6897 -0.4303 -1.6155 24 6 3.4946 -1.2180 -2.8853 25 6 4.5522 -1.9200 -3.4325 26 6 4.3750 -2.6371 -4.6010 27 6 3.1400 -2.6528 -5.2217 28 6 2.0822 -1.9511 -4.6743 29 6 2.2597 -1.2332 -3.5064 30 1 -0.4850 0.8400 0.0004 31 1 3.7728 -2.9902 0.6031 32 1 5.0139 -2.4511 -0.5534 33 1 5.9994 0.8593 4.7049 34 1 4.5104 -0.0783 4.9734 35 1 4.6092 -2.3594 5.7922 36 1 5.8912 -4.0300 7.0683 37 1 8.3154 -3.7397 7.3886 38 1 9.4591 -1.7837 6.4245 39 1 8.1788 -0.1185 5.1396 40 1 4.7385 -0.1496 -1.5194 41 1 3.0744 0.4689 -1.6474 42 1 5.5171 -1.9078 -2.9475 43 1 5.2014 -3.1853 -5.0288 44 1 3.0014 -3.2134 -6.1344 45 1 1.1174 -1.9630 -5.1595 46 1 1.4335 -0.6846 -3.0790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053613032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:23 Heat of formation + Delta-G solvation = 143.958459 kcal Electronic energy + Delta-G solvation = -29606.109834 eV Core-core repulsion = 25657.669908 eV Total energy + Delta-G solvation = -3948.439926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.153 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.90421 -39.33291 -38.83225 -36.32292 -35.55840 -33.33555 -32.10569 -31.72890 -30.97015 -30.50275 -30.38657 -27.59673 -27.22113 -25.75564 -23.33279 -22.66815 -22.52592 -22.01422 -21.60520 -20.83208 -20.19367 -17.60593 -17.21950 -17.00612 -16.65751 -16.11377 -15.55374 -15.25002 -15.20588 -14.75733 -14.68186 -14.52696 -14.17444 -13.97618 -13.48542 -13.39086 -13.11106 -12.90379 -12.78936 -12.54069 -12.45460 -12.24082 -12.16020 -11.87725 -11.60699 -11.48973 -11.08353 -11.03103 -10.91432 -10.78119 -10.69246 -10.47007 -10.35815 -10.04879 -9.85267 -9.40416 -8.99339 -8.85056 -8.75747 -8.42731 -8.22673 -7.31307 -6.22379 -3.65576 1.20804 1.33147 1.72026 1.87519 1.91910 2.83208 3.14729 3.32408 3.36404 3.53150 3.65622 4.21923 4.25954 4.31877 4.50612 4.72710 4.82804 4.90577 4.91803 5.05821 5.11961 5.28461 5.30717 5.35528 5.41135 5.45582 5.53726 5.59609 5.61454 5.77255 5.83591 5.86184 5.93207 5.99397 6.00968 6.15559 6.16155 6.33892 6.36402 6.39339 6.42145 6.50752 6.55333 6.58791 6.65616 6.90554 6.91555 7.00928 7.25077 7.51629 7.74284 8.11112 8.66850 8.78943 9.42824 9.73603 10.91277 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.002896 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.634640 B = 9667.481441 C =10678.539708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.052 3.948 3 Si 0.866 3.134 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.270 4.270 8 H 0.091 0.909 9 N -0.571 5.571 10 C 0.226 3.774 11 C 0.180 3.820 12 N -0.476 5.476 13 C 0.167 3.833 14 C 0.013 3.987 15 C -0.080 4.080 16 C -0.100 4.100 17 C -0.122 4.122 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.108 4.108 21 N -0.401 5.401 22 O 0.058 5.942 23 C 0.162 3.838 24 C -0.080 4.080 25 C -0.119 4.119 26 C -0.130 4.130 27 C -0.134 4.134 28 C -0.125 4.125 29 C -0.087 4.087 30 H 0.267 0.733 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.421 -4.647 3.298 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.151 4.151 3 Si 0.696 3.304 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.199 1.199 7 C -0.398 4.398 8 H 0.108 0.892 9 N -0.290 5.290 10 C 0.096 3.904 11 C -0.043 4.043 12 N -0.210 5.210 13 C -0.106 4.106 14 C -0.026 4.026 15 C -0.081 4.081 16 C -0.118 4.118 17 C -0.140 4.140 18 C -0.140 4.140 19 C -0.142 4.142 20 C -0.126 4.126 21 N -0.114 5.114 22 O 0.003 5.997 23 C 0.038 3.962 24 C -0.082 4.082 25 C -0.137 4.137 26 C -0.148 4.148 27 C -0.152 4.152 28 C -0.143 4.143 29 C -0.105 4.105 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.633 -4.110 3.826 13.825 hybrid contribution 0.301 1.098 -0.015 1.139 sum 12.934 -3.012 3.812 13.816 Atomic orbital electron populations 1.69841 1.05832 1.27086 1.49201 1.25392 0.95003 0.97425 0.97324 0.87144 0.80766 0.85222 0.77285 1.20767 1.22374 1.19931 1.18818 0.85344 0.95041 1.40630 0.89193 1.44384 1.07188 1.50332 1.27091 1.20102 0.90594 0.92158 0.87557 1.31434 0.83901 0.93330 0.95628 1.71888 1.25369 1.19171 1.04545 1.25449 0.89725 0.96882 0.98572 1.18794 1.02223 0.97477 0.84108 1.19634 0.93988 0.96304 0.98167 1.21171 1.00571 0.93435 0.96645 1.21157 0.94347 0.99138 0.99313 1.21156 0.94853 0.97883 1.00134 1.21102 0.99741 0.94826 0.98507 1.21082 0.93463 0.99557 0.98479 1.74452 1.24037 1.20363 0.92514 1.85218 1.37567 1.48923 1.28025 1.20349 0.98683 0.93212 0.83970 1.20637 0.93445 0.98129 0.96005 1.21007 0.98493 0.98089 0.96155 1.20978 0.97095 1.00299 0.96454 1.20990 0.93588 1.00558 1.00082 1.21123 0.98466 0.98074 0.96657 1.21199 0.97226 0.98104 0.93994 0.92274 0.87794 0.90124 0.88716 0.87837 0.85403 0.85943 0.86225 0.86146 0.86049 0.92704 0.91460 0.86731 0.86959 0.87064 0.86737 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.99 13.97 55.49 0.78 -24.22 16 2 C 0.05 1.38 5.29 -17.43 -0.09 1.29 16 3 Si 0.87 21.47 25.07 -169.99 -4.26 17.20 16 4 H -0.28 -6.64 6.66 56.52 0.38 -6.27 16 5 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 6 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.27 -6.86 9.91 -15.06 -0.15 -7.01 16 8 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 9 N -0.57 -12.21 2.06 -175.98 -0.36 -12.58 16 10 C 0.23 4.10 6.30 -5.19 -0.03 4.06 16 11 C 0.18 3.54 8.10 -13.06 -0.11 3.43 16 12 N -0.48 -9.77 11.55 -9.87 -0.11 -9.89 16 13 C 0.17 3.12 7.45 -156.37 -1.17 1.96 16 14 C 0.01 0.19 5.97 -29.03 -0.17 0.01 16 15 C -0.08 -1.08 5.12 -104.62 -0.54 -1.61 16 16 C -0.10 -1.28 9.70 -39.58 -0.38 -1.67 16 17 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 18 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 19 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 20 C -0.11 -1.33 9.70 -39.58 -0.38 -1.72 16 21 N -0.40 -7.82 12.16 30.90 0.38 -7.44 16 22 O 0.06 1.12 11.31 18.12 0.20 1.33 16 23 C 0.16 3.26 4.60 -5.19 -0.02 3.23 16 24 C -0.08 -1.45 5.46 -104.63 -0.57 -2.02 16 25 C -0.12 -1.83 9.68 -39.58 -0.38 -2.21 16 26 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 27 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 28 C -0.13 -1.99 10.05 -39.58 -0.40 -2.38 16 29 C -0.09 -1.61 9.72 -39.58 -0.38 -2.00 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.10 1.83 8.04 -51.93 -0.42 1.41 16 32 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 33 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 34 H 0.10 1.44 8.08 -51.93 -0.42 1.02 16 35 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 37 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.05 1.00 7.99 -51.93 -0.42 0.58 16 41 H 0.07 1.50 3.26 -51.93 -0.17 1.34 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 43 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 44 H 0.11 1.28 8.06 -52.48 -0.42 0.85 16 45 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.13 2.63 8.06 -52.49 -0.42 2.20 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -30.67 394.75 -10.28 -40.95 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.07 Total: 4.99 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -6.77 Total: -16.30 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.67 Total: -54.13 kcal Atomic # 8 Polarization: 1.12 SS G_CDS: 0.20 Total: 1.33 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.26 Total: 17.20 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.67 -10.28 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053613032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.911 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds