Wall clock time and date at job start Tue Mar 31 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35715 * 116.99822 * 2 1 4 4 C 1.39190 * 119.86388 * 359.97438 * 3 2 1 5 5 C 1.37545 * 120.24009 * 180.02562 * 4 3 2 6 6 C 1.39862 * 119.96592 * 359.97438 * 5 4 3 7 7 C 1.47296 * 120.13520 * 180.02562 * 6 5 4 8 8 O 1.21620 * 119.99946 * 233.59693 * 7 6 5 9 9 N 1.34781 * 119.99809 * 53.60630 * 7 6 5 10 10 C 1.47079 * 120.88268 * 5.53392 * 9 7 6 11 11 C 1.53696 * 108.27483 * 128.75667 * 10 9 7 12 12 N 1.46901 * 109.25396 * 54.08572 * 11 10 9 13 13 C 1.46903 * 111.00169 * 172.60603 * 12 11 10 14 14 H 1.09003 * 109.46899 * 304.43933 * 13 12 11 15 15 C 1.52998 * 109.46839 * 64.43761 * 13 12 11 16 16 C 1.50696 * 109.47293 * 184.44156 * 13 12 11 17 17 H 1.08001 * 119.99999 * 354.55646 * 16 13 12 18 18 C 1.37879 * 120.00287 * 174.56220 * 16 13 12 19 19 N 1.31516 * 119.99522 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00206 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47056 * 60.00143 * 20 18 16 22 22 H 1.48496 * 109.46863 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47465 * 299.99913 * 20 18 16 24 24 C 1.46901 * 111.27335 * 296.75701 * 12 11 10 25 25 C 1.47079 * 120.87795 * 185.82031 * 9 7 6 26 26 C 1.40295 * 119.72554 * 0.03021 * 6 5 4 27 27 O 1.35658 * 120.11793 * 179.97438 * 26 6 5 28 28 C 1.42903 * 116.99941 * 180.02562 * 27 26 6 29 29 C 1.38439 * 119.76613 * 359.97229 * 26 6 5 30 30 H 1.09010 * 109.46893 * 60.00458 * 1 2 3 31 31 H 1.09003 * 109.47208 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47417 * 300.00484 * 1 2 3 33 33 H 1.07999 * 119.87709 * 359.72082 * 4 3 2 34 34 H 1.08001 * 120.01550 * 179.97438 * 5 4 3 35 35 H 1.08993 * 109.63149 * 248.53011 * 10 9 7 36 36 H 1.09002 * 109.62531 * 9.11380 * 10 9 7 37 37 H 1.08996 * 109.64831 * 294.08465 * 11 10 9 38 38 H 1.09003 * 109.44367 * 173.96171 * 11 10 9 39 39 H 1.09004 * 109.47113 * 180.02562 * 15 13 12 40 40 H 1.09002 * 109.47637 * 300.00053 * 15 13 12 41 41 H 1.09003 * 109.47235 * 60.00377 * 15 13 12 42 42 H 0.97000 * 119.99450 * 180.02562 * 19 18 16 43 43 H 1.09011 * 109.48782 * 303.14869 * 24 12 11 44 44 H 1.08993 * 109.52060 * 183.08038 * 24 12 11 45 45 H 1.09002 * 109.62903 * 350.89311 * 25 9 7 46 46 H 1.09001 * 109.62781 * 111.27624 * 25 9 7 47 47 H 1.08997 * 109.47110 * 60.00434 * 28 27 26 48 48 H 1.09007 * 109.46781 * 180.02562 * 28 27 26 49 49 H 1.09000 * 109.47039 * 299.99776 * 28 27 26 50 50 H 1.08000 * 119.99047 * 180.02562 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2842 2.3748 -0.0005 5 6 1.9006 3.6044 -0.0011 6 6 3.2968 3.6860 -0.0005 7 6 3.9607 5.0008 -0.0005 8 8 4.7931 5.2617 -0.8480 9 7 3.6459 5.9147 0.9388 10 6 2.7336 5.5793 2.0426 11 6 3.4105 5.9751 3.3645 12 7 3.8129 7.3864 3.2990 13 6 4.3048 7.8545 4.6017 14 1 3.5444 7.6774 5.3623 15 6 5.5803 7.0933 4.9686 16 6 4.6045 9.3294 4.5250 17 1 4.5298 9.8472 3.5802 18 6 4.9741 10.0178 5.6610 19 7 5.0647 9.3873 6.8116 20 14 5.3462 11.8459 5.5658 21 1 4.1441 12.5712 5.0821 22 1 5.7166 12.3464 6.9139 23 1 6.4732 12.0734 4.6260 24 6 4.8150 7.6067 2.2478 25 6 4.2005 7.2758 0.8835 26 6 4.0623 2.5103 -0.0001 27 8 5.4171 2.5801 -0.0001 28 6 6.1306 1.3419 -0.0002 29 6 3.4303 1.2786 0.0004 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2060 2.3133 -0.0055 34 1 1.3066 4.5064 -0.0019 35 1 1.8002 6.1299 1.9264 36 1 2.5330 4.5079 2.0390 37 1 4.2908 5.3530 3.5261 38 1 2.7096 5.8345 4.1874 39 1 5.9451 7.4403 5.9354 40 1 5.3635 6.0265 5.0241 41 1 6.3407 7.2705 4.2081 42 1 5.3244 9.8717 7.6109 43 1 5.6758 6.9618 2.4250 44 1 5.1328 8.6492 2.2603 45 1 4.9701 7.3266 0.1132 46 1 3.4060 7.9860 0.6546 47 1 5.8668 0.7707 -0.8902 48 1 7.2024 1.5403 0.0003 49 1 5.8668 0.7706 0.8898 50 1 4.0160 0.3712 0.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053641636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:09 Heat of formation + Delta-G solvation = -58.612493 kcal Electronic energy + Delta-G solvation = -31724.504932 eV Core-core repulsion = 27525.397861 eV Total energy + Delta-G solvation = -4199.107071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.188 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.01737 -39.70726 -39.14826 -37.63147 -36.57981 -34.79786 -32.47251 -31.50115 -30.63667 -30.23282 -29.16560 -27.71791 -27.48830 -25.84418 -25.24223 -23.67817 -23.06862 -22.25498 -21.46302 -20.07827 -19.11039 -18.44393 -17.27864 -17.00210 -16.56691 -16.37148 -16.20695 -15.85175 -15.67310 -15.19671 -15.00872 -14.72218 -14.60189 -14.27249 -14.01045 -13.71416 -13.63238 -13.20922 -12.98253 -12.85538 -12.72365 -12.57229 -12.38230 -11.96903 -11.85246 -11.81871 -11.56467 -11.32290 -11.15078 -11.11502 -10.91573 -10.81282 -10.73462 -10.61242 -10.36945 -10.02653 -9.76889 -9.58247 -8.93037 -8.87896 -8.42243 -8.38787 -8.25103 -7.18964 -6.02995 -4.05864 0.86204 1.09497 2.75240 2.84299 3.06958 3.19603 3.33035 3.37267 3.40163 3.53856 4.40641 4.41305 4.56305 4.69979 4.71209 4.76762 4.78827 4.89524 4.95053 4.98254 5.07823 5.17166 5.26840 5.30682 5.31769 5.35812 5.50069 5.56616 5.68513 5.78822 5.89847 5.93277 5.99570 6.08997 6.11460 6.19569 6.30744 6.49967 6.61399 6.71693 6.82188 6.87494 6.89813 7.09403 7.12411 7.44694 7.61391 7.69539 7.79714 8.08125 8.32646 8.41525 8.56350 8.99225 9.58990 11.05639 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.002534 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.823020 B =11047.423482 C =11416.837695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.314 6.314 3 C 0.183 3.817 4 C -0.249 4.249 5 C -0.008 4.008 6 C -0.193 4.193 7 C 0.570 3.430 8 O -0.536 6.536 9 N -0.603 5.603 10 C 0.112 3.888 11 C 0.040 3.960 12 N -0.529 5.529 13 C 0.213 3.787 14 H 0.044 0.956 15 C -0.168 4.168 16 C -0.503 4.503 17 H 0.063 0.937 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.049 3.951 25 C 0.115 3.885 26 C 0.212 3.788 27 O -0.293 6.293 28 C 0.024 3.976 29 C -0.251 4.251 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.031 0.969 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.009 0.991 41 H 0.030 0.970 42 H 0.261 0.739 43 H 0.029 0.971 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.058 0.942 48 H 0.103 0.897 49 H 0.058 0.942 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.178 -19.483 -12.888 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.137 3.863 4 C -0.268 4.268 5 C -0.026 4.026 6 C -0.197 4.197 7 C 0.358 3.642 8 O -0.414 6.414 9 N -0.336 5.336 10 C -0.011 4.011 11 C -0.090 4.090 12 N -0.254 5.254 13 C 0.107 3.893 14 H 0.062 0.938 15 C -0.227 4.227 16 C -0.541 4.541 17 H 0.081 0.919 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.080 4.080 25 C -0.007 4.007 26 C 0.164 3.836 27 O -0.204 6.204 28 C -0.071 4.071 29 C -0.271 4.271 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.028 0.972 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.122 0.878 49 H 0.077 0.923 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.880 -19.045 -13.252 24.504 hybrid contribution 0.652 0.249 0.457 0.834 sum -7.228 -18.797 -12.794 23.859 Atomic orbital electron populations 1.23136 0.77778 1.04173 1.01862 1.86023 1.21918 1.26909 1.87860 1.18818 0.91428 0.84241 0.91838 1.21043 1.00340 0.91691 1.13721 1.20887 0.91831 0.97898 0.92011 1.19126 0.93187 0.92105 1.15269 1.17876 0.81664 0.83356 0.81312 1.90764 1.32980 1.79154 1.38496 1.48128 1.47237 1.12523 1.25695 1.22070 0.92819 1.00187 0.86069 1.22452 0.99065 0.91585 0.95890 1.62324 1.40282 1.14661 1.08104 1.19300 0.91640 0.94184 0.84212 0.93802 1.22369 1.01111 0.96061 1.03163 1.21060 1.45461 0.92817 0.94770 0.91938 1.24926 0.95579 0.98321 0.95335 1.69911 1.48269 1.36016 0.99127 0.86596 0.78780 0.85271 0.76967 1.20207 1.21440 1.20327 1.22349 0.93224 1.02587 0.89845 1.21871 0.98832 0.81168 0.98793 1.18543 0.82871 0.91709 0.90495 1.86239 1.14634 1.32622 1.86897 1.23174 0.97281 0.85170 1.01498 1.20274 0.92690 0.97340 1.16767 0.92286 0.88078 0.92119 0.84653 0.84295 0.90808 0.90228 0.95079 0.90372 0.90302 0.97235 0.95109 0.92937 0.95261 0.88529 0.89505 0.91051 0.92304 0.87836 0.92300 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.80 101.05 0.99 1.12 16 2 O -0.31 -2.85 10.48 -18.85 -0.20 -3.05 16 3 C 0.18 1.88 6.69 -39.06 -0.26 1.62 16 4 C -0.25 -2.32 9.01 -39.48 -0.36 -2.68 16 5 C -0.01 -0.08 7.80 -39.23 -0.31 -0.39 16 6 C -0.19 -2.72 4.62 -104.83 -0.48 -3.20 16 7 C 0.57 9.71 6.83 -12.58 -0.09 9.63 16 8 O -0.54 -10.91 16.18 1.11 0.02 -10.90 16 9 N -0.60 -9.82 3.00 -173.50 -0.52 -10.34 16 10 C 0.11 1.61 5.69 -3.36 -0.02 1.59 16 11 C 0.04 0.69 5.14 -3.46 -0.02 0.68 16 12 N -0.53 -10.97 4.61 -227.43 -1.05 -12.02 16 13 C 0.21 5.20 2.25 -68.87 -0.15 5.04 16 14 H 0.04 1.18 8.08 -51.93 -0.42 0.76 16 15 C -0.17 -4.02 8.34 37.16 0.31 -3.71 16 16 C -0.50 -13.39 7.90 -34.44 -0.27 -13.66 16 17 H 0.06 1.65 6.51 -52.49 -0.34 1.31 16 18 C 0.06 1.62 5.32 -17.82 -0.09 1.53 16 19 N -0.89 -25.23 11.73 55.43 0.65 -24.58 16 20 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.05 0.96 4.79 -3.70 -0.02 0.94 16 25 C 0.12 1.98 6.61 -3.60 -0.02 1.96 16 26 C 0.21 2.86 6.68 -38.73 -0.26 2.61 16 27 O -0.29 -4.15 9.67 -22.82 -0.22 -4.37 16 28 C 0.02 0.21 9.81 101.05 0.99 1.20 16 29 C -0.25 -2.79 8.96 -39.34 -0.35 -3.15 16 30 H 0.06 0.25 7.64 -51.92 -0.40 -0.15 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.26 7.65 -51.93 -0.40 -0.13 16 33 H 0.14 0.89 6.27 -52.49 -0.33 0.56 16 34 H 0.14 1.30 7.73 -52.49 -0.41 0.89 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.01 5.53 -51.93 -0.29 0.72 16 37 H 0.03 0.58 6.80 -51.93 -0.35 0.23 16 38 H 0.08 1.31 8.06 -51.93 -0.42 0.90 16 39 H 0.08 2.08 6.52 -51.93 -0.34 1.74 16 40 H 0.01 0.19 6.67 -51.93 -0.35 -0.15 16 41 H 0.03 0.72 6.57 -51.93 -0.34 0.38 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.03 0.61 6.72 -51.92 -0.35 0.27 16 44 H 0.10 2.02 6.18 -51.93 -0.32 1.70 16 45 H 0.09 1.52 7.04 -51.93 -0.37 1.15 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 48 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 50 H 0.14 1.30 6.29 -52.49 -0.33 0.97 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -32.95 389.23 -8.25 -41.20 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.36 Total: 0.95 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.41 Total: 1.14 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -0.92 Total: -46.94 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.40 Total: -18.31 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.95 -8.25 -41.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053641636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.411 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds