Wall clock time and date at job start Tue Mar 31 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35712 * 117.00102 * 2 1 4 4 C 1.39185 * 119.86347 * 0.02562 * 3 2 1 5 5 C 1.37549 * 120.24086 * 180.02562 * 4 3 2 6 6 C 1.39859 * 119.96155 * 0.02562 * 5 4 3 7 7 C 1.47295 * 120.13391 * 179.97438 * 6 5 4 8 8 O 1.21616 * 120.00375 * 144.68080 * 7 6 5 9 9 N 1.34782 * 119.99918 * 324.67766 * 7 6 5 10 10 C 1.47076 * 120.88100 * 184.76443 * 9 7 6 11 11 C 1.53699 * 108.27750 * 128.75897 * 10 9 7 12 12 N 1.46896 * 109.25734 * 54.08086 * 11 10 9 13 13 C 1.46899 * 111.00155 * 172.60847 * 12 11 10 14 14 H 1.08998 * 109.47200 * 179.30063 * 13 12 11 15 15 C 1.53000 * 109.46933 * 59.29928 * 13 12 11 16 16 C 1.50697 * 109.47165 * 299.30472 * 13 12 11 17 17 H 1.08004 * 119.99872 * 5.36879 * 16 13 12 18 18 C 1.37879 * 120.00215 * 185.36915 * 16 13 12 19 19 N 1.31513 * 119.99738 * 5.36944 * 18 16 13 20 20 Si 1.86796 * 120.00224 * 185.36933 * 18 16 13 21 21 H 1.48491 * 109.47490 * 94.99773 * 20 18 16 22 22 H 1.48501 * 109.47133 * 215.00064 * 20 18 16 23 23 H 1.48500 * 109.47142 * 334.99679 * 20 18 16 24 24 C 1.46899 * 111.26784 * 296.75918 * 12 11 10 25 25 C 1.47084 * 120.87964 * 5.04764 * 9 7 6 26 26 C 1.40300 * 119.72991 * 359.97438 * 6 5 4 27 27 O 1.35657 * 120.11909 * 179.97438 * 26 6 5 28 28 C 1.42902 * 117.00221 * 180.02562 * 27 26 6 29 29 C 1.38438 * 119.76084 * 0.02562 * 26 6 5 30 30 H 1.09000 * 109.47371 * 59.99446 * 1 2 3 31 31 H 1.08997 * 109.47429 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46574 * 299.99677 * 1 2 3 33 33 H 1.08001 * 119.87815 * 359.75237 * 4 3 2 34 34 H 1.07992 * 120.01645 * 180.02562 * 5 4 3 35 35 H 1.09007 * 109.63031 * 248.52473 * 10 9 7 36 36 H 1.08998 * 109.62979 * 9.10455 * 10 9 7 37 37 H 1.08998 * 109.64452 * 294.07576 * 11 10 9 38 38 H 1.09000 * 109.44457 * 173.96362 * 11 10 9 39 39 H 1.08997 * 109.47613 * 294.93529 * 15 13 12 40 40 H 1.09001 * 109.47061 * 54.93076 * 15 13 12 41 41 H 1.09001 * 109.47195 * 174.92589 * 15 13 12 42 42 H 0.97004 * 120.00464 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.49214 * 303.14226 * 24 12 11 44 44 H 1.09005 * 109.51316 * 183.07605 * 24 12 11 45 45 H 1.08995 * 109.62763 * 350.88801 * 25 9 7 46 46 H 1.08993 * 109.63114 * 111.47548 * 25 9 7 47 47 H 1.09001 * 109.46600 * 300.00069 * 28 27 26 48 48 H 1.08997 * 109.46901 * 60.00193 * 28 27 26 49 49 H 1.08993 * 109.47037 * 180.02562 * 28 27 26 50 50 H 1.08003 * 119.98614 * 180.02562 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2844 2.3747 0.0005 5 6 1.9007 3.6044 0.0000 6 6 3.2970 3.6858 -0.0016 7 6 3.9610 5.0006 -0.0028 8 8 5.0029 5.1562 0.6049 9 7 3.4139 6.0312 -0.6773 10 6 4.1111 7.3223 -0.7784 11 6 4.1613 7.7283 -2.2599 12 7 2.8005 7.7130 -2.8129 13 6 2.7796 8.2622 -4.1752 14 1 1.7624 8.2275 -4.5653 15 6 3.6990 7.4325 -5.0737 16 6 3.2590 9.6906 -4.1484 17 1 3.6319 10.1179 -3.2292 18 6 3.2217 10.4520 -5.2972 19 7 2.6712 9.9681 -6.3892 20 14 3.9531 12.1709 -5.3027 21 1 5.3476 12.1139 -5.8096 22 1 3.1423 13.0510 -6.1821 23 1 3.9505 12.7143 -3.9208 24 6 2.2279 6.3605 -2.7816 25 6 2.1010 5.8966 -1.3266 26 6 4.0625 2.5100 -0.0022 27 8 5.4173 2.5798 -0.0043 28 6 6.1307 1.3416 -0.0052 29 6 3.4303 1.2784 -0.0016 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.2061 2.3133 -0.0031 34 1 1.3069 4.5063 0.0009 35 1 3.5698 8.0765 -0.2071 36 1 5.1247 7.2225 -0.3901 37 1 4.7860 7.0257 -2.8114 38 1 4.5782 8.7317 -2.3472 39 1 4.7299 7.5396 -4.7365 40 1 3.4071 6.3835 -5.0223 41 1 3.6147 7.7831 -6.1023 42 1 2.6446 10.5039 -7.1974 43 1 2.8795 5.6770 -3.3259 44 1 1.2422 6.3716 -3.2470 45 1 1.7852 4.8537 -1.3011 46 1 1.3703 6.5163 -0.8071 47 1 5.8682 0.7704 0.8852 48 1 5.8655 0.7703 -0.8948 49 1 7.2024 1.5399 -0.0065 50 1 4.0160 0.3710 -0.0016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053641638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:13 Heat of formation + Delta-G solvation = -40.584527 kcal Electronic energy + Delta-G solvation = -31754.741045 eV Core-core repulsion = 27556.415726 eV Total energy + Delta-G solvation = -4198.325319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 348.188 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.08692 -39.72576 -39.16028 -37.60232 -36.67037 -34.83706 -32.50161 -31.70032 -30.46317 -30.27035 -29.20438 -27.70487 -27.46764 -25.97543 -25.26704 -23.53642 -23.40506 -22.13410 -21.43861 -20.19432 -19.10899 -18.39773 -17.36184 -16.97157 -16.57565 -16.32708 -16.19450 -15.80995 -15.60552 -15.27841 -15.01870 -14.83387 -14.58963 -14.25993 -14.09665 -13.68230 -13.59153 -13.23584 -13.01260 -12.88589 -12.70685 -12.45714 -12.40582 -11.96893 -11.83498 -11.80221 -11.58933 -11.26709 -11.17486 -11.12888 -10.89008 -10.80767 -10.72708 -10.48917 -10.37097 -10.06393 -9.75850 -9.51225 -8.95803 -8.82514 -8.44583 -8.39316 -8.21797 -7.20441 -6.04687 -4.05867 0.80375 1.09018 2.75576 2.88002 3.08831 3.20310 3.30544 3.37836 3.41410 3.62253 4.38602 4.40640 4.56738 4.70095 4.70972 4.77704 4.79050 4.88245 4.95245 4.97474 5.08489 5.13538 5.23443 5.29213 5.32064 5.33457 5.47444 5.54127 5.66081 5.76856 5.89111 5.92317 5.96900 6.08882 6.09596 6.18744 6.28250 6.47825 6.60238 6.68997 6.78374 6.86329 6.90011 7.05509 7.14460 7.42493 7.56474 7.69111 7.80484 8.07192 8.29593 8.44495 8.55635 8.99287 9.58543 11.04882 Molecular weight = 348.19amu Principal moments of inertia in cm(-1) A = 0.016420 B = 0.002606 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.789247 B =10743.761868 C =11520.840188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.314 6.314 3 C 0.187 3.813 4 C -0.253 4.253 5 C -0.021 4.021 6 C -0.198 4.198 7 C 0.566 3.434 8 O -0.534 6.534 9 N -0.603 5.603 10 C 0.117 3.883 11 C 0.049 3.951 12 N -0.529 5.529 13 C 0.211 3.789 14 H 0.046 0.954 15 C -0.166 4.166 16 C -0.503 4.503 17 H 0.063 0.937 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.038 3.962 25 C 0.085 3.915 26 C 0.219 3.781 27 O -0.285 6.285 28 C 0.022 3.978 29 C -0.255 4.255 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.137 0.863 34 H 0.155 0.845 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.028 0.972 38 H 0.096 0.904 39 H 0.032 0.968 40 H 0.010 0.990 41 H 0.071 0.929 42 H 0.260 0.740 43 H 0.031 0.969 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.103 0.897 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.632 -20.632 12.645 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.227 6.227 3 C 0.140 3.860 4 C -0.272 4.272 5 C -0.039 4.039 6 C -0.203 4.203 7 C 0.355 3.645 8 O -0.412 6.412 9 N -0.336 5.336 10 C -0.005 4.005 11 C -0.080 4.080 12 N -0.253 5.253 13 C 0.105 3.895 14 H 0.064 0.936 15 C -0.225 4.225 16 C -0.541 4.541 17 H 0.082 0.918 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.722 3.278 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.091 4.091 25 C -0.037 4.037 26 C 0.170 3.830 27 O -0.195 6.195 28 C -0.073 4.073 29 C -0.275 4.275 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.154 0.846 34 H 0.172 0.828 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.115 0.885 39 H 0.051 0.949 40 H 0.029 0.971 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.095 0.905 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.121 0.879 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.183 -20.204 13.069 24.272 hybrid contribution 0.523 0.204 -0.885 1.048 sum -2.660 -20.000 12.185 23.570 Atomic orbital electron populations 1.23145 0.77726 1.04199 1.01921 1.86022 1.21969 1.26928 1.87778 1.18847 0.91452 0.84252 0.91420 1.21084 1.00423 0.91718 1.13959 1.21384 0.92496 0.98299 0.91767 1.19176 0.93034 0.92151 1.15888 1.17840 0.84343 0.83222 0.79136 1.90770 1.23492 1.83515 1.43437 1.48059 1.20566 1.12581 1.52411 1.21952 0.97733 0.83030 0.97796 1.22442 0.91270 1.02119 0.92183 1.62325 1.19424 1.17829 1.25737 1.19316 0.96129 0.93141 0.80879 0.93612 1.22353 0.99706 0.96287 1.04147 1.21096 1.41740 0.95769 0.95519 0.91849 1.24921 0.95287 0.98190 0.95682 1.69941 1.43980 1.37618 1.01697 0.86546 0.79011 0.84235 0.78020 1.20864 1.21332 1.19763 1.22402 1.00410 0.91965 0.94356 1.22730 0.84657 1.02085 0.94235 1.18557 0.82988 0.91641 0.89780 1.86310 1.14440 1.32191 1.86598 1.23179 0.97351 0.85340 1.01422 1.20280 0.92692 0.97361 1.17152 0.92091 0.88066 0.92215 0.84565 0.82755 0.91043 0.89522 0.95334 0.88548 0.94931 0.97063 0.90971 0.93012 0.95076 0.90330 0.88267 0.90503 0.92361 0.92399 0.87857 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.80 101.05 0.99 1.12 16 2 O -0.31 -2.87 10.48 -18.84 -0.20 -3.07 16 3 C 0.19 1.94 6.69 -39.06 -0.26 1.68 16 4 C -0.25 -2.39 9.01 -39.48 -0.36 -2.74 16 5 C -0.02 -0.23 7.42 -39.23 -0.29 -0.52 16 6 C -0.20 -2.83 5.52 -104.83 -0.58 -3.40 16 7 C 0.57 9.66 7.28 -12.58 -0.09 9.57 16 8 O -0.53 -10.79 15.42 -12.53 -0.19 -10.98 16 9 N -0.60 -9.79 3.00 -173.50 -0.52 -10.31 16 10 C 0.12 2.01 6.61 -3.36 -0.02 1.99 16 11 C 0.05 0.95 4.80 -3.46 -0.02 0.94 16 12 N -0.53 -10.86 4.61 -227.44 -1.05 -11.91 16 13 C 0.21 5.13 2.22 -68.87 -0.15 4.98 16 14 H 0.05 1.23 8.04 -51.93 -0.42 0.81 16 15 C -0.17 -3.91 8.24 37.16 0.31 -3.61 16 16 C -0.50 -13.36 7.89 -34.44 -0.27 -13.64 16 17 H 0.06 1.68 6.56 -52.48 -0.34 1.34 16 18 C 0.06 1.65 5.28 -17.82 -0.09 1.55 16 19 N -0.89 -25.19 12.00 55.43 0.66 -24.52 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.04 0.65 5.14 -3.70 -0.02 0.63 16 25 C 0.09 1.19 5.10 -3.60 -0.02 1.18 16 26 C 0.22 2.98 6.66 -38.73 -0.26 2.72 16 27 O -0.28 -4.04 9.13 -36.47 -0.33 -4.37 16 28 C 0.02 0.20 9.81 101.05 0.99 1.19 16 29 C -0.26 -2.86 8.96 -39.34 -0.35 -3.21 16 30 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.26 7.65 -51.92 -0.40 -0.14 16 33 H 0.14 0.90 6.27 -52.49 -0.33 0.57 16 34 H 0.16 1.44 5.43 -52.49 -0.28 1.16 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.09 1.51 7.09 -51.93 -0.37 1.15 16 37 H 0.03 0.59 6.83 -51.93 -0.35 0.23 16 38 H 0.10 2.00 6.21 -51.93 -0.32 1.68 16 39 H 0.03 0.76 6.85 -51.93 -0.36 0.40 16 40 H 0.01 0.23 6.45 -51.93 -0.34 -0.11 16 41 H 0.07 1.87 6.85 -51.93 -0.36 1.51 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.03 0.57 6.70 -51.93 -0.35 0.22 16 44 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 45 H 0.10 1.16 3.64 -52.07 -0.19 0.97 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 48 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 49 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.14 1.30 6.29 -52.48 -0.33 0.97 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -33.11 384.69 -8.52 -41.63 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.17 Total: 1.23 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -0.50 Total: 0.42 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.90 Total: -46.74 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.72 Total: -18.42 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.11 -8.52 -41.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053641638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.044 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds