Wall clock time and date at job start Tue Mar 31 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99889 * 2 1 4 4 H 1.48500 * 109.46947 * 240.00214 * 3 2 1 5 5 H 1.48490 * 109.47257 * 119.99621 * 3 2 1 6 6 H 1.48507 * 109.46964 * 359.97438 * 3 2 1 7 7 C 1.38809 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99943 * 204.74690 * 7 2 1 9 9 N 1.36933 * 120.00252 * 24.74807 * 7 2 1 10 10 C 1.43612 * 120.56536 * 210.35062 * 9 7 2 11 11 C 1.54440 * 116.50426 * 269.70408 * 10 9 7 12 12 C 1.54887 * 109.63144 * 318.81590 * 11 10 9 13 13 N 1.44056 * 110.27658 * 321.54428 * 12 11 10 14 14 C 1.39070 * 110.99922 * 220.66810 * 13 12 11 15 15 N 1.32390 * 119.71276 * 5.97730 * 14 13 12 16 16 C 1.31964 * 121.63508 * 179.71670 * 15 14 13 17 17 C 1.38044 * 120.87818 * 0.55549 * 16 15 14 18 18 C 1.50695 * 120.33506 * 179.70691 * 17 16 15 19 19 F 1.39905 * 109.47278 * 270.02779 * 18 17 16 20 20 F 1.39901 * 109.46975 * 30.02370 * 18 17 16 21 21 F 1.39900 * 109.47381 * 150.02450 * 18 17 16 22 22 C 1.38848 * 119.33654 * 359.72745 * 17 16 15 23 23 C 1.38419 * 118.49516 * 0.02562 * 22 17 16 24 24 Cl 1.73607 * 120.46191 * 179.97438 * 23 22 17 25 25 C 1.46180 * 106.07028 * 99.99795 * 13 12 11 26 26 C 1.46813 * 114.39415 * 267.65056 * 25 13 12 27 27 H 0.97000 * 119.99882 * 184.92082 * 1 2 3 28 28 H 1.09004 * 108.13442 * 31.31840 * 10 9 7 29 29 H 1.09000 * 108.14014 * 147.82851 * 10 9 7 30 30 H 1.09002 * 109.52335 * 198.73510 * 11 10 9 31 31 H 1.09000 * 109.38119 * 78.80678 * 11 10 9 32 32 H 1.08998 * 109.34068 * 201.29603 * 12 11 10 33 33 H 1.09000 * 109.33777 * 81.78895 * 12 11 10 34 34 H 1.08005 * 119.55825 * 180.26550 * 16 15 14 35 35 H 1.08002 * 120.75071 * 180.02562 * 22 17 16 36 36 H 1.08999 * 108.49814 * 146.37768 * 25 13 12 37 37 H 1.09004 * 108.37428 * 28.82913 * 25 13 12 38 38 H 1.08999 * 109.96482 * 298.66893 * 26 25 13 39 39 H 1.09002 * 110.04175 * 177.40601 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 3.1039 1.6965 1.2125 6 1 1.2851 2.7465 -0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0159 -1.2449 0.3921 9 7 1.4200 -2.3338 -0.4954 10 6 1.7604 -3.6258 0.0313 11 6 2.9286 -4.3648 -0.6574 12 6 2.8266 -4.1833 -2.1922 13 7 1.4493 -4.2379 -2.6109 14 6 1.3161 -4.9573 -3.7937 15 7 2.3672 -5.5780 -4.3061 16 6 2.2826 -6.2756 -5.4231 17 6 1.0881 -6.3741 -6.1080 18 6 1.0068 -7.1686 -7.3859 19 9 1.2896 -6.3341 -8.4727 20 9 1.9368 -8.2129 -7.3457 21 9 -0.2813 -7.6962 -7.5259 22 6 -0.0377 -5.7335 -5.6079 23 6 0.0802 -5.0133 -4.4317 24 17 -1.2945 -4.1919 -3.7611 25 6 1.0258 -2.8505 -2.7911 26 6 0.4101 -2.2454 -1.6035 27 1 -0.4850 -0.8370 0.0721 28 1 2.0145 -3.5066 1.0846 29 1 0.8763 -4.2605 -0.0291 30 1 2.8822 -5.4263 -0.4140 31 1 3.8746 -3.9531 -0.3058 32 1 3.3861 -4.9768 -2.6876 33 1 3.2504 -3.2184 -2.4706 34 1 3.1606 -6.7723 -5.8089 35 1 -0.9839 -5.7957 -6.1249 36 1 0.3081 -2.8116 -3.6105 37 1 1.8979 -2.2582 -3.0682 38 1 -0.4910 -2.7947 -1.3307 39 1 0.1642 -1.2020 -1.8009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055378774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:31 Heat of formation + Delta-G solvation = -59.438726 kcal Electronic energy + Delta-G solvation = -29279.945420 eV Core-core repulsion = 24642.562846 eV Total energy + Delta-G solvation = -4637.382574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.086 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.45271 -47.97747 -47.90555 -41.24500 -38.62214 -36.79840 -35.41376 -33.09575 -32.59080 -31.26233 -30.77365 -27.87599 -25.95241 -25.42658 -24.08061 -23.16567 -22.64747 -20.63652 -19.61874 -18.90803 -18.78084 -18.72965 -17.73430 -17.02961 -16.83433 -15.65203 -15.21745 -14.97940 -14.87620 -14.69311 -14.49913 -14.36156 -14.32755 -14.13930 -14.09023 -14.06148 -13.67888 -13.59477 -13.38958 -12.76422 -12.49826 -12.42402 -12.03639 -11.76857 -11.57082 -11.03104 -10.85957 -10.64910 -10.48369 -10.36863 -10.24700 -10.05885 -9.96875 -9.83856 -9.49957 -9.26013 -8.40747 -8.23837 -6.89057 -6.12607 -3.30381 0.38023 0.65106 1.82952 2.35395 3.00718 3.31675 3.46842 3.48988 3.54085 3.67388 3.71566 4.09589 4.10837 4.30737 4.55591 4.56385 4.83455 4.97764 5.14670 5.31665 5.35230 5.47330 5.54466 5.73461 5.83322 5.85931 5.97786 6.22899 6.30587 6.37310 6.47521 6.62809 6.80314 6.85620 7.02992 7.05302 7.18057 7.51827 8.03187 8.52469 9.10619 9.79038 10.29195 11.16468 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.019829 B = 0.003056 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.704999 B = 9160.963582 C = 9547.973118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.023 4.023 3 Si 1.061 2.939 4 H -0.294 1.294 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.349 4.349 8 H 0.054 0.946 9 N -0.592 5.592 10 C 0.165 3.835 11 C -0.134 4.134 12 C 0.041 3.959 13 N -0.434 5.434 14 C 0.368 3.632 15 N -0.507 5.507 16 C 0.193 3.807 17 C -0.280 4.280 18 C 0.524 3.476 19 F -0.175 7.175 20 F -0.175 7.175 21 F -0.177 7.177 22 C 0.008 3.992 23 C -0.122 4.122 24 Cl -0.021 7.021 25 C 0.029 3.971 26 C 0.141 3.859 27 H 0.269 0.731 28 H 0.036 0.964 29 H 0.028 0.972 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.172 0.828 35 H 0.156 0.844 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.037 0.963 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -13.973 -14.303 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.225 4.225 3 Si 0.891 3.109 4 H -0.222 1.222 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.478 4.478 8 H 0.072 0.928 9 N -0.315 5.315 10 C 0.036 3.964 11 C -0.175 4.175 12 C -0.086 4.086 13 N -0.146 5.146 14 C 0.134 3.866 15 N -0.221 5.221 16 C 0.032 3.968 17 C -0.286 4.286 18 C 0.469 3.531 19 F -0.157 7.157 20 F -0.157 7.157 21 F -0.158 7.158 22 C -0.018 4.018 23 C -0.155 4.155 24 Cl 0.008 6.992 25 C -0.097 4.097 26 C 0.016 3.984 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.189 0.811 35 H 0.174 0.826 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.215 -12.305 -13.350 18.196 hybrid contribution -0.208 -1.693 -0.971 1.962 sum 1.007 -13.997 -14.321 20.050 Atomic orbital electron populations 1.70798 1.06599 1.30258 1.47610 1.25808 0.96481 1.01414 0.98760 0.83570 0.74872 0.76223 0.76224 1.22151 1.21945 1.21076 1.19922 0.97550 0.88725 1.41584 0.92774 1.44028 1.47793 1.01600 1.38044 1.20112 0.94340 0.87072 0.94904 1.22803 1.01423 0.99517 0.93801 1.22433 0.85590 1.02841 0.97703 1.58933 1.22535 1.14156 1.18934 1.20266 0.87579 0.91637 0.87142 1.67973 1.28741 1.12761 1.12632 1.22520 0.95790 0.90015 0.88439 1.20687 0.98003 1.10402 0.99532 1.17887 0.73696 0.77631 0.83907 1.93242 1.93341 1.71509 1.57584 1.93198 1.66157 1.59638 1.96675 1.93198 1.38975 1.87269 1.96346 1.21082 0.98534 0.89886 0.92326 1.21253 0.90731 1.05407 0.98085 1.98407 1.40101 1.76085 1.84569 1.22267 1.01736 0.83211 1.02462 1.20583 0.91354 1.00574 0.85904 0.91957 0.94602 0.95341 0.92810 0.92341 0.89107 0.91987 0.81070 0.82647 0.91292 0.92238 0.94516 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.24 12.27 55.49 0.68 -25.56 16 2 C -0.02 -0.61 4.77 -17.43 -0.08 -0.70 16 3 Si 1.06 24.48 29.99 -169.99 -5.10 19.38 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.35 -9.33 9.47 -15.06 -0.14 -9.48 16 8 H 0.05 1.48 7.94 -52.49 -0.42 1.06 16 9 N -0.59 -14.14 2.44 -174.93 -0.43 -14.57 16 10 C 0.16 3.47 5.24 -4.82 -0.03 3.44 16 11 C -0.13 -2.37 6.63 -24.98 -0.17 -2.53 16 12 C 0.04 0.71 5.27 -4.35 -0.02 0.68 16 13 N -0.43 -7.36 3.97 -178.31 -0.71 -8.07 16 14 C 0.37 5.50 6.37 -154.94 -0.99 4.52 16 15 N -0.51 -6.93 7.99 -12.40 -0.10 -7.03 16 16 C 0.19 2.08 10.55 -17.57 -0.19 1.89 16 17 C -0.28 -2.90 5.46 -104.47 -0.57 -3.47 16 18 C 0.52 4.94 3.38 36.00 0.12 5.07 16 19 F -0.18 -1.74 17.30 2.25 0.04 -1.71 16 20 F -0.18 -1.62 16.48 2.25 0.04 -1.58 16 21 F -0.18 -1.70 16.53 2.25 0.04 -1.66 16 22 C 0.01 0.09 9.32 -39.29 -0.37 -0.28 16 23 C -0.12 -1.63 5.88 -39.16 -0.23 -1.86 16 24 Cl -0.02 -0.28 25.27 -51.86 -1.31 -1.60 16 25 C 0.03 0.53 3.94 -7.17 -0.03 0.50 16 26 C 0.14 3.07 4.81 -4.94 -0.02 3.05 16 27 H 0.27 7.81 6.92 -40.82 -0.28 7.53 16 28 H 0.04 0.79 7.98 -51.93 -0.41 0.37 16 29 H 0.03 0.60 7.96 -51.93 -0.41 0.18 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.44 6.01 -51.93 -0.31 1.13 16 33 H 0.06 1.16 6.61 -51.93 -0.34 0.81 16 34 H 0.17 1.36 7.60 -52.48 -0.40 0.96 16 35 H 0.16 1.35 7.68 -52.49 -0.40 0.94 16 36 H 0.07 1.16 4.66 -51.93 -0.24 0.92 16 37 H 0.06 1.17 6.69 -51.93 -0.35 0.83 16 38 H 0.04 0.80 7.99 -51.93 -0.42 0.39 16 39 H 0.10 2.45 5.88 -51.93 -0.31 2.14 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -28.34 334.85 -8.45 -36.79 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -3.94 Total: -0.28 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.71 Total: 0.83 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.55 Total: -55.22 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.11 Total: -4.95 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.10 Total: 19.38 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.31 Total: -1.60 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.34 -8.45 -36.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055378774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.654 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds