Wall clock time and date at job start Tue Mar 31 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38278 * 119.91053 * 2 1 4 4 C 1.38189 * 120.16103 * 180.02562 * 3 2 1 5 5 C 1.38723 * 119.98622 * 0.02562 * 4 3 2 6 6 N 1.40126 * 120.08800 * 180.25674 * 5 4 3 7 7 C 1.34776 * 120.00048 * 325.33842 * 6 5 4 8 8 O 1.21297 * 119.99789 * 4.46236 * 7 6 5 9 9 C 1.50704 * 120.00100 * 184.46836 * 7 6 5 10 10 S 1.81000 * 109.47143 * 179.97438 * 9 7 6 11 11 C 1.76198 * 99.99899 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99905 * 359.97438 * 11 10 9 13 13 C 1.38802 * 119.99984 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99811 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99689 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47108 * 90.00348 * 15 13 11 17 17 H 1.48501 * 109.46817 * 209.99577 * 15 13 11 18 18 H 1.48490 * 109.47504 * 329.99807 * 15 13 11 19 19 C 1.39290 * 119.82297 * 359.97194 * 5 4 3 20 20 O 1.35972 * 120.08443 * 180.02562 * 19 5 4 21 21 C 1.42897 * 117.00345 * 180.02562 * 20 19 5 22 22 C 1.53002 * 109.47367 * 179.97438 * 21 20 19 23 23 F 1.39904 * 109.46939 * 60.00240 * 22 21 20 24 24 F 1.39900 * 109.47146 * 179.97438 * 22 21 20 25 25 F 1.39899 * 109.47157 * 299.99785 * 22 21 20 26 26 C 1.38246 * 119.90551 * 180.02562 * 2 1 3 27 27 H 1.08992 * 109.46920 * 269.98258 * 1 2 3 28 28 H 1.09003 * 109.46831 * 29.97952 * 1 2 3 29 29 H 1.08998 * 109.47076 * 149.97549 * 1 2 3 30 30 H 1.08001 * 119.91577 * 0.02562 * 3 2 1 31 31 H 1.08007 * 120.00824 * 179.97438 * 4 3 2 32 32 H 0.97001 * 119.99823 * 145.34101 * 6 5 4 33 33 H 1.09004 * 109.46479 * 299.99670 * 9 7 6 34 34 H 1.08999 * 109.46765 * 59.99527 * 9 7 6 35 35 H 0.96996 * 119.99852 * 180.02562 * 14 13 11 36 36 H 1.09008 * 109.47135 * 300.00041 * 21 20 19 37 37 H 1.08996 * 109.47514 * 59.99967 * 21 20 19 38 38 H 1.07999 * 119.99705 * 359.96827 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1966 1.1986 0.0000 4 6 3.5785 1.2046 -0.0005 5 6 4.2770 0.0061 -0.0016 6 7 5.6783 0.0098 0.0033 7 6 6.3520 0.9735 -0.6554 8 8 5.7477 1.8827 -1.1841 9 6 7.8560 0.9215 -0.7351 10 16 8.4598 2.3432 -1.6785 11 6 10.1940 2.0385 -1.6148 12 1 10.5711 1.1707 -1.0940 13 6 11.0757 2.9142 -2.2332 14 7 10.6162 3.9726 -2.8667 15 14 12.9143 2.5907 -2.1663 16 1 13.3133 1.7594 -3.3303 17 1 13.6459 3.8823 -2.2066 18 1 13.2452 1.8733 -0.9090 19 6 3.5818 -1.2009 -0.0016 20 8 4.2612 -2.3787 -0.0021 21 6 3.4825 -3.5769 -0.0026 22 6 4.4140 -4.7906 -0.0038 23 9 5.2215 -4.7598 1.1383 24 9 3.6516 -5.9636 -0.0036 25 9 5.2206 -4.7583 -1.1464 26 6 2.1963 -1.1984 -0.0005 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6537 2.1323 0.0004 31 1 4.1145 2.1423 -0.0010 32 1 6.1634 -0.6814 0.4807 33 1 8.2742 0.9485 0.2712 34 1 8.1618 0.0003 -1.2310 35 1 11.2323 4.5844 -3.2991 36 1 2.8536 -3.6019 0.8875 37 1 2.8536 -3.6012 -0.8925 38 1 1.6547 -2.1328 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056313734.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:16 Heat of formation + Delta-G solvation = -201.011386 kcal Electronic energy + Delta-G solvation = -27572.021962 eV Core-core repulsion = 22898.251292 eV Total energy + Delta-G solvation = -4673.770670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.075 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.53390 -48.09995 -47.96746 -40.96162 -39.32043 -37.84743 -34.92513 -32.44599 -31.95367 -31.11574 -29.76154 -29.30534 -26.29067 -25.45875 -24.32689 -22.63031 -21.99390 -20.35443 -19.20996 -19.06469 -18.51310 -18.07485 -17.72636 -16.99158 -16.62903 -16.35251 -15.66841 -14.94481 -14.91547 -14.81703 -14.79788 -14.60277 -14.43721 -14.36172 -14.14511 -14.13961 -13.99577 -13.92420 -13.63266 -13.33357 -12.88125 -12.61924 -12.46358 -12.29951 -12.07290 -11.76075 -11.61055 -11.38252 -11.07236 -11.03666 -10.78041 -10.18732 -9.85042 -9.48033 -9.08026 -8.78758 -8.28641 -7.90652 -6.53163 -6.23546 -3.94590 1.08833 1.18258 1.78821 2.61669 2.85627 2.93717 3.22263 3.24157 3.26729 3.30659 3.45868 3.57522 3.64133 3.88653 4.18431 4.29706 4.41491 4.49591 4.65208 4.81383 4.96071 5.11015 5.12075 5.29078 5.33797 5.38057 5.52525 5.62038 5.76053 5.81542 5.91969 6.07743 6.10018 6.35732 6.49237 6.56219 7.02191 7.50053 7.58632 8.33737 8.40150 9.22086 10.83913 Molecular weight = 349.07amu Principal moments of inertia in cm(-1) A = 0.010502 B = 0.002750 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.565873 B =10180.436311 C =12541.082484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.071 4.071 3 C -0.128 4.128 4 C -0.082 4.082 5 C 0.137 3.863 6 N -0.673 5.673 7 C 0.534 3.466 8 O -0.499 6.499 9 C -0.153 4.153 10 S -0.056 6.056 11 C -0.536 4.536 12 H 0.074 0.926 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.095 3.905 20 O -0.300 6.300 21 C 0.017 3.983 22 C 0.465 3.535 23 F -0.173 7.173 24 F -0.173 7.173 25 F -0.170 7.170 26 C -0.190 4.190 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.129 0.871 31 H 0.154 0.846 32 H 0.413 0.587 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.269 0.731 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.740 -16.360 8.952 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.072 4.072 3 C -0.146 4.146 4 C -0.102 4.102 5 C 0.041 3.959 6 N -0.320 5.320 7 C 0.322 3.678 8 O -0.372 6.372 9 C -0.304 4.304 10 S 0.170 5.830 11 C -0.684 4.684 12 H 0.092 0.908 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.746 3.254 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.197 1.197 19 C 0.049 3.951 20 O -0.215 6.215 21 C -0.061 4.061 22 C 0.410 3.590 23 F -0.154 7.154 24 F -0.155 7.155 25 F -0.152 7.152 26 C -0.209 4.209 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.147 0.853 31 H 0.171 0.829 32 H 0.248 0.752 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.381 -14.732 7.938 27.152 hybrid contribution 2.093 -2.000 0.818 3.008 sum -19.289 -16.731 8.756 26.994 Atomic orbital electron populations 1.20770 0.90870 1.02891 1.02320 1.19651 0.96075 0.92299 0.99147 1.20947 0.93562 0.97728 1.02404 1.21330 0.93984 0.97558 0.97370 1.17104 0.83401 0.90653 1.04731 1.43533 1.03714 1.31400 1.53345 1.20534 0.89914 0.80829 0.76570 1.90686 1.69489 1.33048 1.44008 1.23543 0.92424 1.08039 1.06384 1.85372 1.04566 1.25600 1.67443 1.22865 0.91170 1.13611 1.40777 0.90821 1.24992 0.99661 0.94413 0.94480 1.70011 1.35448 1.12227 1.32596 0.86155 0.82761 0.77851 0.78671 1.20246 1.20741 1.19657 1.18597 0.90597 0.83308 1.02616 1.85992 1.34001 1.11353 1.90106 1.23753 0.92936 0.82464 1.06901 1.20001 0.80325 0.84180 0.74483 1.93244 1.74913 1.96572 1.50706 1.93225 1.75656 1.50279 1.96318 1.93266 1.74857 1.96538 1.50521 1.20811 0.91502 0.99088 1.09482 0.91101 0.91216 0.91705 0.85293 0.82866 0.75156 0.88775 0.88728 0.92147 0.87372 0.87323 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 36.01 0.36 -0.35 16 2 C -0.07 -0.67 5.88 -104.60 -0.62 -1.28 16 3 C -0.13 -1.41 9.69 -39.58 -0.38 -1.80 16 4 C -0.08 -1.14 8.71 -39.42 -0.34 -1.48 16 5 C 0.14 1.90 6.32 -83.49 -0.53 1.37 16 6 N -0.67 -9.83 5.19 -9.75 -0.05 -9.88 16 7 C 0.53 9.90 7.70 -10.98 -0.08 9.81 16 8 O -0.50 -10.80 13.28 5.54 0.07 -10.72 16 9 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 10 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 11 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 12 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 15 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.09 1.09 6.70 -39.07 -0.26 0.82 16 20 O -0.30 -3.14 9.58 -19.65 -0.19 -3.33 16 21 C 0.02 0.11 4.70 37.16 0.17 0.29 16 22 C 0.46 3.82 3.32 37.16 0.12 3.95 16 23 F -0.17 -1.66 17.26 2.25 0.04 -1.63 16 24 F -0.17 -1.32 17.32 2.25 0.04 -1.28 16 25 F -0.17 -1.79 17.26 2.25 0.04 -1.75 16 26 C -0.19 -1.74 8.69 -39.46 -0.34 -2.09 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.15 2.41 6.18 -52.48 -0.32 2.09 16 32 H 0.41 5.03 8.56 -40.82 -0.35 4.68 16 33 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 34 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.11 0.45 7.66 -51.92 -0.40 0.06 16 37 H 0.11 0.53 7.66 -51.93 -0.40 0.13 16 38 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -34.11 358.55 -6.50 -40.61 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -3.88 Total: 1.67 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.48 Total: -6.47 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.68 Total: -35.15 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.11 Total: -14.05 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.12 Total: -4.65 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.11 -6.50 -40.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056313734.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.401 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds