Wall clock time and date at job start Tue Mar 31 2020 05:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47191 * 2 1 4 4 C 1.46496 * 119.99952 * 270.00234 * 3 2 1 5 5 C 1.50705 * 109.47014 * 270.00098 * 4 3 2 6 6 H 1.07998 * 119.99782 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00143 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99533 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00001 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47359 * 89.99600 * 9 7 5 11 11 H 1.48501 * 109.46892 * 209.99751 * 9 7 5 12 12 H 1.48505 * 109.47125 * 329.99414 * 9 7 5 13 13 C 1.34775 * 119.99781 * 90.00144 * 3 2 1 14 14 O 1.21582 * 119.99776 * 180.02562 * 13 3 2 15 15 N 1.34772 * 120.00267 * 359.97438 * 13 3 2 16 16 C 1.46504 * 120.00249 * 180.02562 * 15 13 3 17 17 C 1.50697 * 109.47192 * 180.02562 * 16 15 13 18 18 C 1.38288 * 119.92973 * 269.72351 * 17 16 15 19 19 C 1.38116 * 120.07103 * 179.76817 * 18 17 16 20 20 C 1.38871 * 119.92598 * 0.50690 * 19 18 17 21 21 N 1.39920 * 120.07180 * 179.72493 * 20 19 18 22 22 C 1.34775 * 120.00397 * 213.31814 * 21 20 19 23 23 O 1.21288 * 119.99726 * 5.26023 * 22 21 20 24 24 C 1.50703 * 120.00115 * 185.26670 * 22 21 20 25 25 C 1.53002 * 109.46743 * 179.97438 * 24 22 21 26 26 C 1.52996 * 109.46957 * 299.99486 * 24 22 21 27 27 C 1.38878 * 119.86063 * 359.74887 * 20 19 18 28 28 C 1.38112 * 119.92647 * 359.97438 * 27 20 19 29 29 H 1.09007 * 109.47025 * 300.00157 * 1 2 3 30 30 H 1.09002 * 109.46997 * 60.00157 * 1 2 3 31 31 H 1.08992 * 109.47392 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46749 * 240.00207 * 2 1 3 33 33 H 1.09002 * 109.46997 * 119.99843 * 2 1 3 34 34 H 1.09001 * 109.47498 * 29.99750 * 4 3 2 35 35 H 1.08999 * 109.47138 * 150.00020 * 4 3 2 36 36 H 0.97006 * 119.99438 * 180.02562 * 8 7 5 37 37 H 0.97009 * 119.99875 * 0.02562 * 15 13 3 38 38 H 1.09006 * 109.47070 * 60.00005 * 16 15 13 39 39 H 1.08994 * 109.46969 * 299.99995 * 16 15 13 40 40 H 1.08001 * 119.96203 * 0.02562 * 18 17 16 41 41 H 1.07992 * 120.03650 * 180.25958 * 19 18 17 42 42 H 0.97008 * 120.00025 * 33.30835 * 21 20 19 43 43 H 1.08997 * 109.47026 * 59.99622 * 24 22 21 44 44 H 1.08997 * 109.47407 * 60.00176 * 25 24 22 45 45 H 1.09006 * 109.46931 * 180.02562 * 25 24 22 46 46 H 1.08998 * 109.47255 * 299.99343 * 25 24 22 47 47 H 1.08997 * 109.47363 * 299.99928 * 26 24 22 48 48 H 1.08999 * 109.47031 * 60.00714 * 26 24 22 49 49 H 1.09002 * 109.47135 * 180.02562 * 26 24 22 50 50 H 1.07998 * 120.03540 * 179.97438 * 27 20 19 51 51 H 1.08008 * 119.96042 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 3.3494 3.1265 -3.6175 9 14 5.9138 2.0974 -3.4164 10 1 5.9777 0.8767 -4.2595 11 1 6.3928 3.2651 -4.1989 12 1 6.7737 1.9176 -2.2191 13 6 2.2430 2.0165 1.1672 14 8 2.6479 3.1630 1.1672 15 7 2.0179 1.3814 2.3344 16 6 2.2616 2.0721 3.6032 17 6 1.9353 1.1488 4.7486 18 6 0.6573 1.1293 5.2765 19 6 0.3538 0.2807 6.3231 20 6 1.3364 -0.5458 6.8522 21 7 1.0337 -1.4025 7.9163 22 6 1.9700 -1.6804 8.8450 23 8 3.0427 -1.1152 8.8128 24 6 1.6842 -2.6936 9.9234 25 6 2.9029 -2.8205 10.8398 26 6 0.4747 -2.2390 10.7426 27 6 2.6202 -0.5200 6.3232 28 6 2.9157 0.3267 5.2729 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6878 -2.0284 35 1 2.0955 3.1411 -1.1384 36 1 3.6755 3.5170 -4.4435 37 1 1.6946 0.4668 2.3344 38 1 1.6313 2.9597 3.6605 39 1 3.3095 2.3663 3.6613 40 1 -0.1053 1.7752 4.8672 41 1 -0.6455 0.2629 6.7322 42 1 0.1499 -1.7963 7.9857 43 1 1.4712 -3.6601 9.4667 44 1 3.1163 -1.8541 11.2965 45 1 2.6964 -3.5536 11.6196 46 1 3.7643 -3.1446 10.2559 47 1 0.6877 -1.2725 11.1994 48 1 -0.3934 -2.1489 10.0896 49 1 0.2682 -2.9715 11.5229 50 1 3.3866 -1.1612 6.7328 51 1 3.9141 0.3476 4.8613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058014803.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:29 Heat of formation + Delta-G solvation = -44.927266 kcal Electronic energy + Delta-G solvation = -29768.458380 eV Core-core repulsion = 25667.663408 eV Total energy + Delta-G solvation = -4100.794972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.04014 -39.57467 -38.83054 -35.79713 -35.14927 -35.07044 -33.89308 -32.62017 -31.15462 -30.31416 -30.02045 -27.71750 -27.14757 -25.71308 -23.96771 -23.14202 -22.95999 -22.41145 -21.29142 -20.29936 -19.22101 -18.18516 -17.54818 -17.41274 -16.31380 -16.01470 -15.96085 -15.50592 -15.31971 -14.93519 -14.63238 -14.45098 -14.22083 -13.99202 -13.74023 -13.62370 -13.50104 -13.25901 -13.12204 -12.88580 -12.87332 -12.68386 -12.45462 -12.02848 -11.99070 -11.76832 -11.68317 -11.64646 -11.50647 -11.35990 -11.11918 -10.86033 -10.72097 -10.64056 -10.44432 -10.13448 -10.05050 -9.56152 -9.18363 -9.11449 -8.55862 -8.35961 -8.32754 -7.50367 -5.96466 -4.00349 0.93784 1.22400 2.16566 2.58904 3.34770 3.35790 3.41521 3.47152 3.79713 4.03751 4.08807 4.27931 4.35642 4.49509 4.62919 4.71096 4.72098 4.76828 4.80869 5.03537 5.09801 5.21213 5.23039 5.28712 5.29600 5.37108 5.37940 5.38749 5.55416 5.66018 5.69892 5.73767 5.75918 5.88760 5.89642 6.04272 6.05180 6.07189 6.24618 6.27989 6.52299 6.53359 6.78657 6.93844 6.95186 6.99303 7.47820 7.66718 7.67516 7.84856 8.04897 8.33711 8.83703 9.01474 9.47631 9.66268 11.11250 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019725 B = 0.001843 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.208458 B =15185.603483 C =15706.462581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 N -0.613 5.613 4 C 0.262 3.738 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.701 3.299 14 O -0.587 6.587 15 N -0.754 5.754 16 C 0.182 3.818 17 C -0.113 4.113 18 C -0.080 4.080 19 C -0.148 4.148 20 C 0.145 3.855 21 N -0.674 5.674 22 C 0.514 3.486 23 O -0.515 6.515 24 C -0.113 4.113 25 C -0.135 4.135 26 C -0.147 4.147 27 C -0.123 4.123 28 C -0.079 4.079 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.391 0.609 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.410 0.590 43 H 0.101 0.899 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.071 0.929 50 H 0.133 0.867 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.738 -15.364 27.916 33.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.348 5.348 4 C 0.142 3.858 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.402 3.598 14 O -0.465 6.465 15 N -0.414 5.414 16 C 0.057 3.943 17 C -0.114 4.114 18 C -0.099 4.099 19 C -0.169 4.169 20 C 0.052 3.948 21 N -0.320 5.320 22 C 0.302 3.698 23 O -0.389 6.389 24 C -0.135 4.135 25 C -0.192 4.192 26 C -0.204 4.204 27 C -0.143 4.143 28 C -0.099 4.099 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.226 0.774 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.246 0.754 43 H 0.119 0.881 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.151 0.849 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.635 -14.011 27.727 32.526 hybrid contribution 0.300 -0.858 -0.352 0.975 sum -9.335 -14.869 27.375 32.521 Atomic orbital electron populations 1.22238 0.96994 1.01162 1.02405 1.21290 0.93333 0.84648 1.02145 1.47537 1.67806 1.13112 1.06385 1.19155 0.95950 0.93462 0.77240 1.21498 0.97143 1.31533 1.06026 0.92554 1.24929 0.97746 0.95033 0.96487 1.69937 1.35619 1.33643 1.14338 0.86514 0.84905 0.77564 0.78519 1.20758 1.21153 1.19960 1.15926 0.78939 0.84713 0.80210 1.90884 1.52547 1.16986 1.86040 1.45351 1.74408 1.17357 1.04254 1.19880 1.01732 0.93026 0.79622 1.20011 0.93938 0.99080 0.98346 1.20919 0.96079 0.97698 0.95233 1.20834 0.99087 0.97286 0.99666 1.17761 0.94883 0.92924 0.89271 1.43595 1.16576 1.47366 1.24426 1.20947 0.83937 0.82975 0.81975 1.90748 1.24150 1.50232 1.73758 1.21338 0.98730 0.98229 0.95180 1.21640 0.96213 1.02722 0.98674 1.21824 0.95848 1.02548 1.00215 1.21099 0.95953 1.00880 0.96357 1.21056 0.99475 0.94398 0.94928 0.93098 0.91982 0.92403 0.89957 0.92535 0.95090 0.93890 0.92839 0.77434 0.91179 0.91117 0.85283 0.85714 0.75436 0.88086 0.91743 0.91749 0.91748 0.91804 0.92136 0.90999 0.84897 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.94 16 2 C 0.11 1.82 5.89 -4.04 -0.02 1.80 16 3 N -0.61 -13.40 2.46 -180.80 -0.44 -13.85 16 4 C 0.26 7.01 5.16 -5.19 -0.03 6.98 16 5 C -0.52 -15.20 9.39 -34.44 -0.32 -15.53 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.70 15.40 8.28 -86.92 -0.72 14.68 16 14 O -0.59 -15.70 15.92 5.29 0.08 -15.62 16 15 N -0.75 -12.29 5.41 -66.42 -0.36 -12.65 16 16 C 0.18 2.61 5.80 -5.19 -0.03 2.58 16 17 C -0.11 -1.31 5.25 -104.59 -0.55 -1.86 16 18 C -0.08 -0.80 9.69 -39.61 -0.38 -1.18 16 19 C -0.15 -1.28 9.96 -39.39 -0.39 -1.67 16 20 C 0.15 1.39 6.28 -83.69 -0.53 0.86 16 21 N -0.67 -4.66 5.27 -9.86 -0.05 -4.72 16 22 C 0.51 4.23 6.89 -10.98 -0.08 4.15 16 23 O -0.51 -6.38 13.67 5.55 0.08 -6.30 16 24 C -0.11 -0.53 3.27 -91.77 -0.30 -0.83 16 25 C -0.13 -0.74 8.48 37.16 0.32 -0.42 16 26 C -0.15 -0.44 9.09 37.16 0.34 -0.11 16 27 C -0.12 -1.39 8.66 -39.39 -0.34 -1.73 16 28 C -0.08 -0.92 9.69 -39.61 -0.38 -1.30 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.06 0.79 6.36 -51.93 -0.33 0.46 16 34 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.39 5.42 6.19 -40.82 -0.25 5.17 16 38 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 39 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.41 1.45 8.09 -40.82 -0.33 1.12 16 43 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 45 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 47 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.06 0.11 7.45 -51.93 -0.39 -0.28 16 49 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 50 H 0.13 1.59 6.41 -52.49 -0.34 1.25 16 51 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 422.08 15.07 6.36 6.36 Total: -1.00 -37.05 422.08 -10.07 -47.13 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.31 Total: 2.48 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -3.14 Total: 6.14 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.12 Total: -57.55 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.16 Total: -21.92 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -37.05 -10.07 -47.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058014803.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.200 kcal (2) G-P(sol) polarization free energy of solvation -37.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds