Wall clock time and date at job start Tue Mar 31 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99732 * 2 1 4 4 H 1.48503 * 109.47047 * 274.96160 * 3 2 1 5 5 H 1.48498 * 109.47321 * 34.96156 * 3 2 1 6 6 H 1.48504 * 109.47207 * 154.96090 * 3 2 1 7 7 C 1.38951 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00209 * 339.49235 * 7 2 1 9 9 N 1.37100 * 119.99356 * 159.49353 * 7 2 1 10 10 C 1.46499 * 120.00646 * 322.30032 * 9 7 2 11 11 C 1.50702 * 109.46839 * 264.48805 * 10 9 7 12 12 C 1.38236 * 119.99488 * 271.57433 * 11 10 9 13 13 C 1.38233 * 119.99726 * 179.76962 * 12 11 10 14 14 C 1.38233 * 120.00220 * 0.50814 * 13 12 11 15 15 C 1.38239 * 119.99491 * 359.75206 * 14 13 12 16 16 C 1.38230 * 120.00357 * 359.97438 * 15 14 13 17 17 C 1.34785 * 119.99844 * 142.30191 * 9 7 2 18 18 O 1.21287 * 119.99953 * 179.97438 * 17 9 7 19 19 C 1.50700 * 119.99693 * 359.97438 * 17 9 7 20 20 C 1.53001 * 109.47030 * 179.97438 * 19 17 9 21 21 C 1.50700 * 109.47030 * 179.97438 * 20 19 17 22 22 C 1.34246 * 126.50315 * 264.99659 * 21 20 19 23 23 N 1.36829 * 109.92923 * 179.97438 * 22 21 20 24 24 H 0.97003 * 125.05898 * 180.02562 * 23 22 21 25 25 C 1.37690 * 109.87509 * 0.02562 * 23 22 21 26 26 C 1.39126 * 133.50378 * 179.97438 * 25 23 22 27 27 C 1.37746 * 119.77278 * 180.02562 * 26 25 23 28 28 C 1.38831 * 120.67192 * 359.97438 * 27 26 25 29 29 C 1.36621 * 120.52670 * 0.02562 * 28 27 26 30 30 C 1.39633 * 119.76183 * 0.02562 * 29 28 27 31 31 H 0.97002 * 120.00412 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.46364 * 24.48164 * 10 9 7 33 33 H 1.08993 * 109.47027 * 144.47972 * 10 9 7 34 34 H 1.08003 * 120.00133 * 0.02562 * 12 11 10 35 35 H 1.08000 * 120.00083 * 180.23243 * 13 12 11 36 36 H 1.07995 * 120.00506 * 179.71951 * 14 13 12 37 37 H 1.08001 * 119.99802 * 179.97438 * 15 14 13 38 38 H 1.07995 * 120.00136 * 179.97438 * 16 15 14 39 39 H 1.09003 * 109.47542 * 59.99650 * 19 17 9 40 40 H 1.09004 * 109.47537 * 299.99859 * 19 17 9 41 41 H 1.08992 * 109.46977 * 59.99956 * 20 19 17 42 42 H 1.09002 * 109.47099 * 299.99822 * 20 19 17 43 43 H 1.07997 * 125.02746 * 359.97438 * 22 21 20 44 44 H 1.07998 * 120.11129 * 0.31876 * 26 25 23 45 45 H 1.08005 * 119.66444 * 179.97438 * 27 26 25 46 46 H 1.07996 * 119.73645 * 179.97438 * 28 27 26 47 47 H 1.07996 * 120.11914 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3906 2.1070 -1.3949 5 1 1.5018 2.6201 0.8023 6 1 3.5941 1.4123 0.5926 7 6 2.0089 -1.2033 0.0005 8 1 1.5203 -2.1088 0.3286 9 7 3.3147 -1.2410 -0.4154 10 6 3.7495 -0.4095 -1.5405 11 6 3.7096 -1.2211 -2.8097 12 6 4.8124 -1.9624 -3.1909 13 6 4.7742 -2.7106 -4.3526 14 6 3.6370 -2.7092 -5.1386 15 6 2.5362 -1.9636 -4.7601 16 6 2.5724 -1.2199 -3.5954 17 6 4.1986 -2.0431 0.2108 18 8 5.3537 -2.0768 -0.1574 19 6 3.7515 -2.8980 1.3685 20 6 4.9393 -3.7066 1.8940 21 6 4.4923 -4.5610 3.0521 22 6 4.5839 -4.2513 4.3551 23 7 4.0756 -5.2704 5.1136 24 1 4.0329 -5.2760 6.0827 25 6 3.6340 -6.2868 4.2964 26 6 3.0456 -7.5239 4.5393 27 6 2.7080 -8.3401 3.4823 28 6 2.9482 -7.9410 2.1745 29 6 3.5250 -6.7304 1.9132 30 6 3.8763 -5.8876 2.9696 31 1 -0.4851 0.8400 -0.0004 32 1 3.0839 0.4483 -1.6367 33 1 4.7671 -0.0618 -1.3632 34 1 5.7023 -1.9603 -2.5789 35 1 5.6344 -3.2927 -4.6485 36 1 3.6088 -3.2902 -6.0485 37 1 1.6479 -1.9622 -5.3743 38 1 1.7125 -0.6371 -3.3000 39 1 2.9676 -3.5787 1.0362 40 1 3.3655 -2.2600 2.1636 41 1 5.7233 -3.0263 2.2262 42 1 5.3248 -4.3446 1.0987 43 1 4.9974 -3.3337 4.7466 44 1 2.8499 -7.8412 5.5529 45 1 2.2517 -9.3003 3.6729 46 1 2.6778 -8.5931 1.3572 47 1 3.7093 -6.4268 0.8933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058201864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:44 Heat of formation + Delta-G solvation = 51.518967 kcal Electronic energy + Delta-G solvation = -29638.863563 eV Core-core repulsion = 25751.841071 eV Total energy + Delta-G solvation = -3887.022492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.158 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.12548 -39.29709 -38.09221 -36.80876 -35.08301 -33.65402 -32.19083 -31.16765 -30.53233 -30.32446 -29.21119 -28.30409 -26.03358 -24.97422 -23.20711 -22.71307 -21.96006 -21.64773 -20.89078 -19.14297 -18.85448 -17.66217 -17.08100 -16.36837 -16.26326 -15.78606 -15.43587 -15.26094 -14.75770 -14.50218 -14.39509 -14.32393 -13.95526 -13.75734 -13.66809 -13.17962 -12.88641 -12.72914 -12.56988 -12.48470 -12.14716 -11.99532 -11.75848 -11.65132 -11.53081 -11.41579 -11.30403 -10.98033 -10.75982 -10.69351 -10.45880 -10.24599 -10.14494 -9.95605 -9.43750 -9.22838 -8.67162 -8.36447 -8.14349 -8.10350 -7.82275 -7.46913 -6.49881 -4.08913 1.24579 1.74376 1.86265 1.96359 2.83331 3.01533 3.18762 3.22222 3.25666 3.76528 4.03214 4.08692 4.20509 4.67933 4.83460 4.93018 4.94667 5.11460 5.24439 5.38666 5.39823 5.42656 5.50378 5.52001 5.67398 5.73320 5.83445 5.86828 5.90481 5.99034 6.01897 6.07671 6.17198 6.20700 6.27067 6.33543 6.49256 6.53861 6.55354 6.63851 6.70482 6.73038 6.81956 6.88787 6.99379 7.00648 7.00894 7.28892 7.29653 7.33167 7.56205 7.62712 8.07298 8.24652 8.94353 9.34537 9.69114 10.60772 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.009888 B = 0.003333 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.919530 B = 8399.525651 C = 9715.564802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.068 3.932 3 Si 0.869 3.131 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.338 4.338 8 H 0.105 0.895 9 N -0.460 5.460 10 C 0.136 3.864 11 C -0.084 4.084 12 C -0.098 4.098 13 C -0.133 4.133 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.094 4.094 17 C 0.484 3.516 18 O -0.597 6.597 19 C -0.109 4.109 20 C -0.029 4.029 21 C -0.152 4.152 22 C 0.043 3.957 23 N -0.599 5.599 24 H 0.412 0.588 25 C 0.094 3.906 26 C -0.136 4.136 27 C -0.102 4.102 28 C -0.153 4.153 29 C -0.062 4.062 30 C -0.100 4.100 31 H 0.275 0.725 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.169 0.831 44 H 0.115 0.885 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 -9.298 4.072 11.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.139 4.139 3 Si 0.697 3.303 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.122 0.878 9 N -0.180 5.180 10 C 0.014 3.986 11 C -0.085 4.085 12 C -0.117 4.117 13 C -0.151 4.151 14 C -0.148 4.148 15 C -0.148 4.148 16 C -0.113 4.113 17 C 0.274 3.726 18 O -0.482 6.482 19 C -0.149 4.149 20 C -0.067 4.067 21 C -0.159 4.159 22 C -0.082 4.082 23 N -0.201 5.201 24 H 0.249 0.751 25 C -0.013 4.013 26 C -0.157 4.157 27 C -0.121 4.121 28 C -0.172 4.172 29 C -0.081 4.081 30 C -0.105 4.105 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.186 0.814 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.074 -9.142 4.043 11.696 hybrid contribution -0.131 0.932 0.518 1.075 sum 5.943 -8.210 4.561 11.114 Atomic orbital electron populations 1.69758 1.06198 1.28092 1.45327 1.25316 0.95032 0.98299 0.95297 0.87064 0.81287 0.83778 0.78193 1.20031 1.21423 1.18421 1.19087 0.85233 0.96412 1.45762 0.87790 1.43765 1.09584 1.39282 1.25412 1.20622 1.00380 0.93065 0.84580 1.20297 0.93773 0.98646 0.95786 1.21268 0.98852 0.95712 0.95821 1.21051 0.98053 1.00227 0.95766 1.21016 0.94005 1.00072 0.99724 1.21050 0.98194 0.98235 0.97347 1.21151 0.97571 0.98710 0.93853 1.20522 0.84684 0.83042 0.84339 1.90501 1.18789 1.70265 1.68652 1.21323 0.98272 0.98116 0.97187 1.19691 0.96991 0.96195 0.93845 1.20468 1.06579 0.94810 0.94069 1.21630 1.02464 0.93279 0.90807 1.41679 1.54899 1.15317 1.08253 0.75145 1.18265 1.01466 0.91187 0.90364 1.19952 1.04029 0.92507 0.99222 1.20748 1.00080 0.99020 0.92242 1.20601 1.02894 0.97148 0.96562 1.20364 0.96577 0.92981 0.98178 1.19153 1.03735 0.95419 0.92169 0.91510 0.90740 0.90771 0.85314 0.86821 0.86960 0.86681 0.85897 0.89986 0.89478 0.91029 0.91037 0.81385 0.86690 0.86140 0.86254 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.10 13.96 55.50 0.77 -22.32 16 2 C 0.07 1.74 5.30 -17.47 -0.09 1.64 16 3 Si 0.87 19.89 24.94 -169.99 -4.24 15.65 16 4 H -0.27 -6.03 6.68 56.52 0.38 -5.65 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.34 -8.55 9.08 -14.93 -0.14 -8.69 16 8 H 0.10 2.80 7.23 -52.49 -0.38 2.42 16 9 N -0.46 -10.82 2.18 -116.10 -0.25 -11.07 16 10 C 0.14 3.02 4.08 -5.19 -0.02 3.00 16 11 C -0.08 -1.72 5.42 -104.62 -0.57 -2.29 16 12 C -0.10 -1.87 9.34 -39.58 -0.37 -2.24 16 13 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 14 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 15 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 16 C -0.09 -1.85 9.69 -39.59 -0.38 -2.23 16 17 C 0.48 10.84 7.59 -10.98 -0.08 10.75 16 18 O -0.60 -13.91 14.25 5.55 0.08 -13.83 16 19 C -0.11 -2.10 4.38 -27.88 -0.12 -2.22 16 20 C -0.03 -0.48 5.04 -27.88 -0.14 -0.62 16 21 C -0.15 -2.32 5.57 -102.71 -0.57 -2.89 16 22 C 0.04 0.55 11.73 -16.73 -0.20 0.35 16 23 N -0.60 -6.85 6.07 -10.65 -0.06 -6.91 16 24 H 0.41 3.26 8.96 -40.82 -0.37 2.90 16 25 C 0.09 1.28 7.28 -83.99 -0.61 0.67 16 26 C -0.14 -1.61 10.08 -39.43 -0.40 -2.01 16 27 C -0.10 -1.17 10.01 -39.54 -0.40 -1.57 16 28 C -0.15 -1.92 9.97 -39.95 -0.40 -2.32 16 29 C -0.06 -0.91 10.05 -39.65 -0.40 -1.31 16 30 C -0.10 -1.54 6.35 -105.14 -0.67 -2.21 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.07 1.68 3.36 -51.93 -0.17 1.51 16 33 H 0.07 1.61 7.55 -51.93 -0.39 1.22 16 34 H 0.13 2.52 7.03 -52.48 -0.37 2.15 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 39 H 0.08 1.63 7.67 -51.93 -0.40 1.23 16 40 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 41 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 42 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 43 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 46 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 47 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 390.29 15.07 5.88 5.88 Total: -1.00 -30.01 390.29 -10.87 -40.89 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -6.31 Total: 13.51 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -6.75 Total: -21.79 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.46 Total: -40.30 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.24 Total: 15.65 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.01 -10.87 -40.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.404 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds