Wall clock time and date at job start Tue Mar 31 2020 05:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99732 * 2 1 4 4 H 1.48503 * 109.47047 * 274.96160 * 3 2 1 5 5 H 1.48498 * 109.47321 * 34.96156 * 3 2 1 6 6 H 1.48504 * 109.47207 * 154.96090 * 3 2 1 7 7 C 1.38951 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00209 * 339.49235 * 7 2 1 9 9 N 1.37100 * 119.99356 * 159.49353 * 7 2 1 10 10 C 1.46499 * 120.00646 * 322.30032 * 9 7 2 11 11 C 1.50702 * 109.46839 * 264.48805 * 10 9 7 12 12 C 1.38236 * 119.99488 * 271.57433 * 11 10 9 13 13 C 1.38233 * 119.99726 * 179.76962 * 12 11 10 14 14 C 1.38233 * 120.00220 * 0.50814 * 13 12 11 15 15 C 1.38239 * 119.99491 * 359.75206 * 14 13 12 16 16 C 1.38230 * 120.00357 * 359.97438 * 15 14 13 17 17 C 1.34785 * 119.99844 * 142.30191 * 9 7 2 18 18 O 1.21287 * 119.99953 * 179.97438 * 17 9 7 19 19 C 1.50700 * 119.99693 * 359.97438 * 17 9 7 20 20 C 1.53001 * 109.47030 * 179.97438 * 19 17 9 21 21 C 1.50700 * 109.47030 * 179.97438 * 20 19 17 22 22 C 1.34246 * 126.50315 * 264.99659 * 21 20 19 23 23 N 1.36829 * 109.92923 * 179.97438 * 22 21 20 24 24 H 0.97003 * 125.05898 * 180.02562 * 23 22 21 25 25 C 1.37690 * 109.87509 * 0.02562 * 23 22 21 26 26 C 1.39126 * 133.50378 * 179.97438 * 25 23 22 27 27 C 1.37746 * 119.77278 * 180.02562 * 26 25 23 28 28 C 1.38831 * 120.67192 * 359.97438 * 27 26 25 29 29 C 1.36621 * 120.52670 * 0.02562 * 28 27 26 30 30 C 1.39633 * 119.76183 * 0.02562 * 29 28 27 31 31 H 0.97002 * 120.00412 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.46364 * 24.48164 * 10 9 7 33 33 H 1.08993 * 109.47027 * 144.47972 * 10 9 7 34 34 H 1.08003 * 120.00133 * 0.02562 * 12 11 10 35 35 H 1.08000 * 120.00083 * 180.23243 * 13 12 11 36 36 H 1.07995 * 120.00506 * 179.71951 * 14 13 12 37 37 H 1.08001 * 119.99802 * 179.97438 * 15 14 13 38 38 H 1.07995 * 120.00136 * 179.97438 * 16 15 14 39 39 H 1.09003 * 109.47542 * 59.99650 * 19 17 9 40 40 H 1.09004 * 109.47537 * 299.99859 * 19 17 9 41 41 H 1.08992 * 109.46977 * 59.99956 * 20 19 17 42 42 H 1.09002 * 109.47099 * 299.99822 * 20 19 17 43 43 H 1.07997 * 125.02746 * 359.97438 * 22 21 20 44 44 H 1.07998 * 120.11129 * 0.31876 * 26 25 23 45 45 H 1.08005 * 119.66444 * 179.97438 * 27 26 25 46 46 H 1.07996 * 119.73645 * 179.97438 * 28 27 26 47 47 H 1.07996 * 120.11914 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3906 2.1070 -1.3949 5 1 1.5018 2.6201 0.8023 6 1 3.5941 1.4123 0.5926 7 6 2.0089 -1.2033 0.0005 8 1 1.5203 -2.1088 0.3286 9 7 3.3147 -1.2410 -0.4154 10 6 3.7495 -0.4095 -1.5405 11 6 3.7096 -1.2211 -2.8097 12 6 4.8124 -1.9624 -3.1909 13 6 4.7742 -2.7106 -4.3526 14 6 3.6370 -2.7092 -5.1386 15 6 2.5362 -1.9636 -4.7601 16 6 2.5724 -1.2199 -3.5954 17 6 4.1986 -2.0431 0.2108 18 8 5.3537 -2.0768 -0.1574 19 6 3.7515 -2.8980 1.3685 20 6 4.9393 -3.7066 1.8940 21 6 4.4923 -4.5610 3.0521 22 6 4.5839 -4.2513 4.3551 23 7 4.0756 -5.2704 5.1136 24 1 4.0329 -5.2760 6.0827 25 6 3.6340 -6.2868 4.2964 26 6 3.0456 -7.5239 4.5393 27 6 2.7080 -8.3401 3.4823 28 6 2.9482 -7.9410 2.1745 29 6 3.5250 -6.7304 1.9132 30 6 3.8763 -5.8876 2.9696 31 1 -0.4851 0.8400 -0.0004 32 1 3.0839 0.4483 -1.6367 33 1 4.7671 -0.0618 -1.3632 34 1 5.7023 -1.9603 -2.5789 35 1 5.6344 -3.2927 -4.6485 36 1 3.6088 -3.2902 -6.0485 37 1 1.6479 -1.9622 -5.3743 38 1 1.7125 -0.6371 -3.3000 39 1 2.9676 -3.5787 1.0362 40 1 3.3655 -2.2600 2.1636 41 1 5.7233 -3.0263 2.2262 42 1 5.3248 -4.3446 1.0987 43 1 4.9974 -3.3337 4.7466 44 1 2.8499 -7.8412 5.5529 45 1 2.2517 -9.3003 3.6729 46 1 2.6778 -8.5931 1.3572 47 1 3.7093 -6.4268 0.8933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058201864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:42 Heat of formation + Delta-G solvation = 37.736997 kcal Electronic energy + Delta-G solvation = -29639.461194 eV Core-core repulsion = 25751.841071 eV Total energy + Delta-G solvation = -3887.620123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.158 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.12808 -40.98700 -39.63273 -37.77602 -36.88895 -35.01003 -34.08465 -32.67938 -31.75825 -31.71527 -30.20870 -29.48697 -27.61505 -26.85450 -24.67371 -23.69617 -23.37801 -22.62083 -22.35680 -20.81084 -20.19431 -18.84335 -18.70150 -18.02582 -17.39530 -17.31885 -17.07698 -16.40648 -16.25634 -15.98255 -15.84761 -15.67736 -15.27544 -15.05120 -14.76696 -14.59046 -14.39007 -14.34526 -14.16168 -13.82091 -13.63211 -13.29641 -13.18433 -13.14260 -13.00426 -12.71699 -12.50820 -12.50215 -12.34964 -12.02121 -11.95877 -11.86747 -11.69006 -11.53525 -11.13140 -10.59030 -10.37181 -9.78237 -9.72799 -9.62081 -9.09582 -8.51075 -8.50007 -6.11945 0.25517 0.44205 0.54968 0.74724 1.16959 1.29361 1.39829 1.76687 1.93050 2.16315 2.31368 2.60155 2.98185 3.02723 3.10720 3.86199 3.87589 3.94877 3.98202 4.10051 4.19538 4.25561 4.27905 4.32412 4.33312 4.42323 4.49044 4.50411 4.60294 4.61196 4.73718 4.78082 4.79229 4.88355 4.98246 5.03204 5.12708 5.13302 5.21318 5.29858 5.36668 5.42442 5.61595 5.62643 5.62849 5.74525 5.81440 5.84479 5.90078 6.07265 6.17129 6.25866 6.29471 6.79470 6.96183 7.42637 7.80390 8.63248 Molecular weight = 348.16amu Principal moments of inertia in cm(-1) A = 0.009888 B = 0.003333 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.919530 B = 8399.525651 C = 9715.564802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.036 3.964 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.469 5.469 10 C 0.135 3.865 11 C -0.108 4.108 12 C -0.113 4.113 13 C -0.128 4.128 14 C -0.118 4.118 15 C -0.128 4.128 16 C -0.116 4.116 17 C 0.478 3.522 18 O -0.606 6.606 19 C -0.098 4.098 20 C -0.011 4.011 21 C -0.195 4.195 22 C 0.063 3.937 23 N -0.584 5.584 24 H 0.431 0.569 25 C 0.078 3.922 26 C -0.133 4.133 27 C -0.105 4.105 28 C -0.153 4.153 29 C -0.095 4.095 30 C -0.129 4.129 31 H 0.279 0.721 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.145 0.855 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.198 0.802 44 H 0.147 0.853 45 H 0.154 0.846 46 H 0.137 0.863 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.201 -10.638 4.268 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.168 4.168 3 Si 0.744 3.256 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.461 4.461 8 H 0.095 0.905 9 N -0.190 5.190 10 C 0.013 3.987 11 C -0.109 4.109 12 C -0.132 4.132 13 C -0.146 4.146 14 C -0.136 4.136 15 C -0.146 4.146 16 C -0.135 4.135 17 C 0.269 3.731 18 O -0.492 6.492 19 C -0.138 4.138 20 C -0.049 4.049 21 C -0.201 4.201 22 C -0.063 4.063 23 N -0.188 5.188 24 H 0.271 0.729 25 C -0.029 4.029 26 C -0.154 4.154 27 C -0.124 4.124 28 C -0.172 4.172 29 C -0.114 4.114 30 C -0.134 4.134 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.163 0.837 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.215 0.785 44 H 0.164 0.836 45 H 0.171 0.829 46 H 0.155 0.845 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.575 -10.493 4.256 13.094 hybrid contribution -0.274 1.218 0.414 1.316 sum 6.301 -9.275 4.671 12.147 Atomic orbital electron populations 1.69818 1.07341 1.29046 1.46881 1.25757 0.95444 1.00637 0.95010 0.86275 0.79829 0.80727 0.78752 1.18802 1.20817 1.18939 1.18851 0.85861 0.95642 1.45742 0.90463 1.43856 1.09027 1.39837 1.26248 1.20615 0.99748 0.93108 0.85270 1.20219 0.95077 0.99936 0.95669 1.21253 0.98003 0.96742 0.97156 1.21423 0.99567 0.99172 0.94446 1.21478 0.92651 0.98955 1.00544 1.21390 0.99792 0.97101 0.96292 1.21148 0.96800 1.00107 0.95461 1.21061 0.84506 0.82774 0.84741 1.90480 1.19154 1.70483 1.69060 1.21264 0.99087 0.97514 0.95896 1.19424 0.95613 0.95711 0.94178 1.20367 1.09676 0.95474 0.94631 1.22024 1.00292 0.93904 0.90105 1.41664 1.53712 1.14340 1.09117 0.72913 1.18532 1.02146 0.92311 0.89928 1.20377 1.02515 0.91527 1.00936 1.21166 0.99516 1.00265 0.91478 1.20909 1.01750 0.96451 0.98102 1.20461 0.98796 0.94445 0.97718 1.19433 1.04612 0.95847 0.93526 0.91074 0.91476 0.91020 0.86560 0.83725 0.82747 0.83937 0.87670 0.91347 0.89582 0.90778 0.92680 0.78472 0.83570 0.82874 0.84500 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.43 13.96 21.66 0.30 -49.13 16 2 C 0.04 1.90 5.30 84.93 0.45 2.35 16 3 Si 0.92 41.77 24.94 68.60 1.71 43.48 16 4 H -0.26 -11.34 6.68 99.48 0.66 -10.68 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.33 -17.64 9.08 84.04 0.76 -16.88 16 8 H 0.08 4.43 7.23 -2.91 -0.02 4.41 16 9 N -0.47 -22.95 2.18 -639.60 -1.39 -24.34 16 10 C 0.13 6.18 4.08 85.63 0.35 6.53 16 11 C -0.11 -4.55 5.42 -19.87 -0.11 -4.66 16 12 C -0.11 -4.32 9.34 22.27 0.21 -4.11 16 13 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 14 C -0.12 -3.31 10.05 22.27 0.22 -3.09 16 15 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 16 C -0.12 -4.62 9.69 22.27 0.22 -4.41 16 17 C 0.48 22.34 7.59 87.66 0.67 23.00 16 18 O -0.61 -29.21 14.25 -3.05 -0.04 -29.25 16 19 C -0.10 -3.98 4.38 29.85 0.13 -3.85 16 20 C -0.01 -0.38 5.04 29.85 0.15 -0.23 16 21 C -0.19 -6.05 5.57 -18.62 -0.10 -6.15 16 22 C 0.06 1.53 11.73 83.00 0.97 2.50 16 23 N -0.58 -12.26 6.07 -187.61 -1.14 -13.40 16 24 H 0.43 5.64 8.96 -92.71 -0.83 4.81 16 25 C 0.08 2.04 7.28 39.03 0.28 2.32 16 26 C -0.13 -2.84 10.08 22.37 0.23 -2.61 16 27 C -0.11 -2.19 10.01 22.30 0.22 -1.97 16 28 C -0.15 -3.79 9.97 22.03 0.22 -3.57 16 29 C -0.10 -2.92 10.05 22.23 0.22 -2.70 16 30 C -0.13 -4.08 6.35 -20.20 -0.13 -4.21 16 31 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.07 3.12 3.36 -2.39 -0.01 3.11 16 33 H 0.07 3.23 7.55 -2.39 -0.02 3.21 16 34 H 0.12 4.67 7.03 -2.91 -0.02 4.65 16 35 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 36 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 37 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 39 H 0.07 2.95 7.67 -2.39 -0.02 2.93 16 40 H 0.09 3.48 8.10 -2.38 -0.02 3.46 16 41 H 0.07 2.48 8.10 -2.39 -0.02 2.46 16 42 H 0.05 2.05 8.10 -2.39 -0.02 2.03 16 43 H 0.20 3.44 8.06 -2.91 -0.02 3.41 16 44 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 45 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 46 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 47 H 0.11 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -67.72 390.29 4.97 -62.75 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: 0.12 Total: 39.19 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 5.41 Total: -29.30 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -2.23 Total: -86.87 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.04 Total: -29.25 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.71 Total: 43.48 kcal Total: -67.72 4.97 -62.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.482 kcal (2) G-P(sol) polarization free energy of solvation -67.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds