Wall clock time and date at job start Tue Mar 31 2020 05:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46893 * 212.67306 * 3 2 1 5 5 C 1.37103 * 119.99548 * 263.79457 * 4 3 2 6 6 H 1.08004 * 119.99574 * 142.48536 * 5 4 3 7 7 C 1.38945 * 120.00107 * 322.47556 * 5 4 3 8 8 N 1.31412 * 119.99915 * 157.59401 * 7 5 4 9 9 Si 1.86802 * 120.00068 * 337.59328 * 7 5 4 10 10 H 1.48499 * 109.47254 * 95.70475 * 9 7 5 11 11 H 1.48506 * 109.46653 * 215.70403 * 9 7 5 12 12 H 1.48503 * 109.46989 * 335.70057 * 9 7 5 13 13 C 1.34781 * 120.00195 * 83.79512 * 4 3 2 14 14 O 1.21295 * 119.99623 * 179.97438 * 13 4 3 15 15 C 1.50696 * 119.99737 * 359.97438 * 13 4 3 16 16 N 1.46496 * 109.46807 * 179.97438 * 15 13 4 17 17 C 1.37787 * 120.00084 * 180.02562 * 16 15 13 18 18 N 1.29414 * 120.47589 * 359.97181 * 17 16 15 19 19 S 1.67210 * 106.21414 * 180.02562 * 18 17 16 20 20 O 1.42101 * 107.59211 * 247.98806 * 19 18 17 21 21 O 1.42101 * 107.58670 * 112.01940 * 19 18 17 22 22 C 1.77136 * 99.56472 * 0.02562 * 19 18 17 23 23 C 1.36531 * 134.75383 * 179.97438 * 22 19 18 24 24 C 1.38749 * 119.65183 * 180.02562 * 23 22 19 25 25 C 1.38367 * 119.52027 * 359.72528 * 24 23 22 26 26 C 1.37675 * 120.94613 * 0.55305 * 25 24 23 27 27 C 1.40096 * 103.13753 * 359.97438 * 22 19 18 28 28 H 1.08998 * 109.47116 * 92.67164 * 3 2 1 29 29 H 1.08997 * 109.47121 * 332.66838 * 3 2 1 30 30 H 0.96995 * 120.00090 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47144 * 60.00110 * 15 13 4 32 32 H 1.09002 * 109.46942 * 299.99890 * 15 13 4 33 33 H 0.97001 * 120.00508 * 359.97438 * 16 15 13 34 34 H 1.07997 * 120.17609 * 0.02562 * 23 22 19 35 35 H 1.07990 * 120.24032 * 179.97438 * 24 23 22 36 36 H 1.08000 * 119.53236 * 180.27453 * 25 24 23 37 37 H 1.07998 * 119.85092 * 179.72073 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.1635 0.7456 5 6 3.4447 2.3089 0.0778 6 1 3.2244 3.2741 0.5095 7 6 4.0819 2.2280 -1.1543 8 7 4.0286 3.2412 -1.9894 9 14 5.0145 0.6789 -1.6235 10 1 4.1358 -0.2011 -2.4352 11 1 6.2160 1.0454 -2.4157 12 1 5.4331 -0.0389 -0.3927 13 6 3.2014 1.1074 2.0881 14 8 3.6057 2.0702 2.7054 15 6 2.8173 -0.1514 2.8222 16 7 3.0218 0.0402 4.2601 17 6 2.7370 -0.9822 5.1387 18 7 2.2879 -2.1154 4.7039 19 16 2.0680 -3.0790 6.0525 20 8 3.0244 -4.1282 5.9913 21 8 0.6706 -3.2807 6.2129 22 6 2.5929 -1.9483 7.3110 23 6 2.6997 -2.0055 8.6709 24 6 3.1626 -0.9002 9.3702 25 6 3.5158 0.2451 8.6788 26 6 3.4038 0.3074 7.3080 27 6 2.9380 -0.8012 6.5845 28 1 2.9713 0.0487 -1.0265 29 1 2.9717 -0.9121 0.4718 30 1 4.4731 3.1846 -2.8497 31 1 3.4368 -0.9781 2.4745 32 1 1.7684 -0.3778 2.6309 33 1 3.3584 0.8866 4.5937 34 1 2.4252 -2.9064 9.1995 35 1 3.2503 -0.9348 10.4460 36 1 3.8803 1.1041 9.2225 37 1 3.6803 1.2119 6.7866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058201967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:39 Heat of formation + Delta-G solvation = 20.624123 kcal Electronic energy + Delta-G solvation = -27333.499337 eV Core-core repulsion = 23205.374562 eV Total energy + Delta-G solvation = -4128.124774 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -40.75457 -39.54763 -37.96082 -37.14724 -36.49681 -35.78763 -35.06995 -34.15114 -32.45412 -31.68793 -31.30046 -28.47197 -27.94381 -25.02969 -23.90964 -23.48632 -21.74112 -20.05200 -19.28665 -18.80997 -18.24833 -17.65412 -16.99683 -16.66184 -16.27063 -16.11710 -15.91161 -15.62419 -15.32155 -15.18016 -14.88960 -14.44808 -14.10479 -13.86648 -13.54067 -13.42947 -13.16700 -12.97087 -12.70861 -12.69463 -12.60993 -12.20804 -12.14828 -12.02064 -12.01740 -11.97291 -11.67526 -11.07223 -10.91714 -10.68373 -10.35934 -10.21120 -9.96336 -9.60731 -9.53036 -9.25948 -9.14059 -8.33378 -6.70453 -4.34502 -0.27866 0.31271 0.54877 1.64968 2.34469 2.76014 2.79729 2.90274 2.97291 2.98127 3.01697 3.12423 3.21376 3.25965 3.63532 3.85151 4.02654 4.03959 4.28372 4.34124 4.55606 4.68645 4.74409 4.80930 4.91731 4.95081 5.17619 5.20409 5.27335 5.38705 5.42702 5.56058 5.57135 5.67089 5.72808 6.11789 6.33384 7.08868 7.17103 7.80343 7.86645 8.03035 8.51215 8.89425 9.17703 10.39930 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.003077 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.103026 B = 9097.932654 C = 9892.938380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.201 3.799 3 C 0.173 3.827 4 N -0.447 5.447 5 C -0.330 4.330 6 H 0.113 0.887 7 C 0.067 3.933 8 N -0.844 5.844 9 Si 0.860 3.140 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.254 1.254 13 C 0.462 3.538 14 O -0.549 6.549 15 C 0.091 3.909 16 N -0.640 5.640 17 C 0.509 3.491 18 N -0.891 5.891 19 S 2.586 3.414 20 O -0.947 6.947 21 O -0.947 6.947 22 C -0.619 4.619 23 C 0.001 3.999 24 C -0.098 4.098 25 C -0.085 4.085 26 C -0.053 4.053 27 C -0.110 4.110 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.280 0.720 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.426 0.574 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 -7.699 18.193 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.119 4.119 3 C 0.046 3.954 4 N -0.169 5.169 5 C -0.457 4.457 6 H 0.131 0.869 7 C -0.142 4.142 8 N -0.478 5.478 9 Si 0.686 3.314 10 H -0.193 1.193 11 H -0.203 1.203 12 H -0.177 1.177 13 C 0.250 3.750 14 O -0.429 6.429 15 C -0.036 4.036 16 N -0.272 5.272 17 C 0.232 3.768 18 N -0.746 5.746 19 S 2.670 3.330 20 O -0.936 6.936 21 O -0.935 6.935 22 C -0.703 4.703 23 C -0.018 4.018 24 C -0.118 4.118 25 C -0.103 4.103 26 C -0.074 4.074 27 C -0.116 4.116 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.268 0.732 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.589 -8.539 17.347 19.344 hybrid contribution 1.461 0.577 0.397 1.620 sum 2.049 -7.962 17.744 19.556 Atomic orbital electron populations 1.81105 1.13034 1.08230 1.08408 1.29824 0.95616 0.93067 0.93351 1.19670 0.81409 0.92564 1.01767 1.43497 1.56123 1.13042 1.04214 1.19057 1.39284 0.85196 1.02148 0.86946 1.25383 0.95795 0.97704 0.95351 1.69735 1.38551 1.32089 1.07394 0.87191 0.81104 0.83268 0.79884 1.19321 1.20282 1.17747 1.20040 0.82687 0.88943 0.83371 1.90583 1.49116 1.37520 1.65723 1.21589 1.04237 0.98878 0.78872 1.44698 1.62205 1.14285 1.06021 1.20017 0.82710 0.87641 0.86420 1.77635 1.43089 1.13176 1.40717 1.06387 0.75256 0.76684 0.74697 1.93638 1.61468 1.53095 1.85356 1.93643 1.29692 1.85144 1.85048 1.31427 1.12953 1.16176 1.09760 1.20048 0.92547 0.98668 0.90532 1.21810 0.96219 0.92819 1.00935 1.21320 0.96733 0.98681 0.93610 1.21160 0.95177 0.96768 0.94318 1.19920 1.04105 0.97173 0.90442 0.86292 0.86785 0.90921 0.87248 0.88007 0.73249 0.84004 0.83826 0.83887 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -8.35 18.54 42.15 0.78 -7.57 16 2 C 0.20 3.56 15.00 -20.76 -0.31 3.25 16 3 C 0.17 2.84 4.27 -6.83 -0.03 2.81 16 4 N -0.45 -8.97 2.15 -117.94 -0.25 -9.22 16 5 C -0.33 -8.04 9.36 -14.93 -0.14 -8.18 16 6 H 0.11 3.14 7.91 -52.48 -0.42 2.72 16 7 C 0.07 1.60 5.26 -17.47 -0.09 1.50 16 8 N -0.84 -21.76 13.96 55.50 0.77 -20.99 16 9 Si 0.86 16.81 25.05 -169.99 -4.26 12.55 16 10 H -0.27 -4.74 6.69 56.52 0.38 -4.36 16 11 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 12 H -0.25 -4.66 7.11 56.52 0.40 -4.26 16 13 C 0.46 8.62 7.63 -10.99 -0.08 8.53 16 14 O -0.55 -11.68 15.54 5.54 0.09 -11.59 16 15 C 0.09 1.32 4.79 -5.20 -0.02 1.30 16 16 N -0.64 -8.27 5.64 -66.32 -0.37 -8.65 16 17 C 0.51 6.52 7.52 -155.42 -1.17 5.35 16 18 N -0.89 -13.01 11.21 27.68 0.31 -12.70 16 19 S 2.59 36.92 6.47 -107.50 -0.70 36.22 16 20 O -0.95 -15.63 18.09 -56.99 -1.03 -16.66 16 21 O -0.95 -15.98 18.09 -56.99 -1.03 -17.01 16 22 C -0.62 -6.92 6.56 -39.50 -0.26 -7.18 16 23 C 0.00 0.01 10.02 -40.01 -0.40 -0.39 16 24 C -0.10 -0.58 10.10 -39.35 -0.40 -0.98 16 25 C -0.09 -0.51 9.97 -39.74 -0.40 -0.90 16 26 C -0.05 -0.42 9.84 -39.00 -0.38 -0.80 16 27 C -0.11 -1.18 6.10 -104.82 -0.64 -1.82 16 28 H 0.12 2.01 3.61 -51.93 -0.19 1.83 16 29 H 0.11 1.36 6.70 -51.93 -0.35 1.01 16 30 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.11 1.37 7.42 -51.93 -0.39 0.98 16 32 H 0.10 1.46 7.48 -51.93 -0.39 1.07 16 33 H 0.43 5.03 6.76 -40.82 -0.28 4.75 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 36 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 37 H 0.14 0.83 7.55 -52.49 -0.40 0.44 16 LS Contribution 341.97 15.07 5.15 5.15 Total: -1.00 -34.64 341.97 -7.69 -42.33 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -2.82 Total: 5.65 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -4.33 Total: 2.49 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 1.24 Total: -59.13 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.98 Total: -45.26 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -4.26 Total: 12.55 kcal Atomic # 16 Polarization: 36.92 SS G_CDS: -0.70 Total: 36.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.64 -7.69 -42.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.953 kcal (2) G-P(sol) polarization free energy of solvation -34.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds