Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39759 * 125.83342 * 2 1 4 4 C 1.36108 * 107.82607 * 180.14480 * 3 2 1 5 5 N 1.39475 * 126.21522 * 179.90297 * 4 3 2 6 6 C 1.34777 * 120.00058 * 359.69223 * 5 4 3 7 7 O 1.21292 * 119.99984 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99762 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.46925 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47300 * 180.02562 * 9 8 6 11 11 C 1.38203 * 119.99765 * 264.72283 * 10 9 8 12 12 C 1.38432 * 119.99423 * 179.76722 * 11 10 9 13 13 F 1.35108 * 119.99629 * 180.27013 * 12 11 10 14 14 C 1.38474 * 120.00405 * 0.53076 * 12 11 10 15 15 C 1.38160 * 119.99600 * 359.72226 * 14 12 11 16 16 C 1.38428 * 119.99891 * 84.99531 * 10 9 8 17 17 F 1.35101 * 120.00084 * 359.97438 * 16 10 9 18 18 N 1.35260 * 107.56895 * 359.63872 * 4 3 2 19 19 C 1.46500 * 126.04677 * 180.22309 * 18 4 3 20 20 C 1.50702 * 109.46860 * 90.00742 * 19 18 4 21 21 H 1.07998 * 120.00073 * 359.97438 * 20 19 18 22 22 C 1.37872 * 119.99950 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00238 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00087 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47042 * 59.99695 * 24 22 20 26 26 H 1.48496 * 109.47478 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46966 * 300.00244 * 24 22 20 28 28 N 1.30846 * 125.84356 * 179.74227 * 2 1 3 29 29 H 1.09004 * 109.46991 * 270.23199 * 1 2 3 30 30 H 1.08992 * 109.47431 * 30.23242 * 1 2 3 31 31 H 1.08997 * 109.46840 * 150.24059 * 1 2 3 32 32 H 1.08000 * 126.09213 * 0.03361 * 3 2 1 33 33 H 0.96999 * 119.99895 * 179.68671 * 5 4 3 34 34 H 1.09000 * 109.47318 * 299.99141 * 8 6 5 35 35 H 1.09000 * 109.47161 * 59.99772 * 8 6 5 36 36 H 1.09004 * 109.46930 * 299.99901 * 9 8 6 37 37 H 1.09004 * 109.47059 * 59.99503 * 9 8 6 38 38 H 1.07996 * 120.00540 * 0.02562 * 11 10 9 39 39 H 1.08000 * 120.00062 * 179.70462 * 14 12 11 40 40 H 1.07999 * 119.99971 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.46904 * 209.99932 * 19 18 4 42 42 H 1.08998 * 109.47347 * 330.00438 * 19 18 4 43 43 H 0.97001 * 119.99830 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1331 0.0000 4 6 3.6196 0.7123 -0.0033 5 7 4.7512 1.5277 -0.0063 6 6 4.6155 2.8686 -0.0124 7 8 3.5094 3.3663 -0.0157 8 6 5.8382 3.7497 -0.0151 9 6 5.4086 5.2181 -0.0227 10 6 6.6312 6.0992 -0.0260 11 6 7.1264 6.5983 1.1638 12 6 8.2523 7.4037 1.1612 13 9 8.7397 7.8873 2.3248 14 6 8.8759 7.7182 -0.0345 15 6 8.3777 7.2234 -1.2244 16 6 7.2549 6.4131 -1.2213 17 9 6.7678 5.9292 -2.3848 18 7 3.6093 -0.6402 0.0029 19 6 4.7872 -1.5113 0.0067 20 6 5.1910 -1.8037 1.4289 21 1 4.6270 -1.3824 2.2479 22 6 6.2806 -2.6090 1.6844 23 7 6.9671 -3.1224 0.6871 24 14 6.7817 -2.9708 3.4472 25 1 5.6626 -3.6472 4.1510 26 1 7.9756 -3.8538 3.4513 27 1 7.1055 -1.6983 4.1409 28 7 2.2732 -1.0607 0.0048 29 1 -0.3633 0.0042 1.0277 30 1 -0.3634 0.8878 -0.5174 31 1 -0.3633 -0.8921 -0.5101 32 1 1.9901 2.1598 0.0005 33 1 5.6357 1.1297 -0.0039 34 1 6.4324 3.5493 0.8765 35 1 6.4343 3.5412 -0.9035 36 1 4.8146 5.4183 -0.9144 37 1 4.8122 5.4268 0.8655 38 1 6.6375 6.3567 2.0960 39 1 9.7515 8.3505 -0.0370 40 1 8.8638 7.4690 -2.1570 41 1 4.5500 -2.4453 -0.5029 42 1 5.6085 -1.0142 -0.5094 43 1 7.7339 -3.6887 0.8670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058213501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = -35.750897 kcal Electronic energy + Delta-G solvation = -29319.119319 eV Core-core repulsion = 24808.657081 eV Total energy + Delta-G solvation = -4510.462238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 349.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.28181 -49.24293 -40.88210 -39.61897 -38.99904 -34.81766 -34.40988 -33.76593 -32.08290 -30.97755 -30.08859 -29.10563 -28.13834 -26.06147 -25.35110 -23.38474 -22.90915 -22.08498 -20.97334 -19.71375 -19.25071 -18.02296 -17.62008 -17.57328 -17.00730 -16.70330 -16.31672 -16.19414 -15.72013 -15.65306 -15.02010 -14.79729 -14.66771 -14.44597 -14.30774 -14.02759 -13.81359 -13.40385 -13.12283 -12.94405 -12.86343 -12.76005 -12.67317 -12.51031 -12.04717 -11.98359 -11.78289 -11.58013 -11.39036 -11.28150 -11.10719 -10.89029 -10.40207 -10.34593 -9.95292 -9.84604 -9.58837 -9.46850 -8.91083 -8.73656 -7.92593 -7.44609 -6.35106 -4.43866 0.52145 0.58692 2.24161 2.76708 2.96561 3.10308 3.16571 3.21524 3.26095 3.59939 3.70645 3.78670 3.81106 4.10782 4.22512 4.25316 4.52226 4.63689 4.71362 4.86288 4.90856 4.98195 5.26198 5.36220 5.37033 5.39679 5.52090 5.57880 5.63101 5.64647 5.84985 5.88717 6.03416 6.15716 6.18703 6.26513 6.36913 6.42628 6.66118 6.82387 7.03087 7.50917 7.57057 7.61882 7.78034 7.89823 8.28826 8.60675 8.69857 9.23831 10.71961 Molecular weight = 349.13amu Principal moments of inertia in cm(-1) A = 0.008843 B = 0.002728 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.457521 B =10260.397729 C =12236.443056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.296 4.296 4 C 0.301 3.699 5 N -0.640 5.640 6 C 0.521 3.479 7 O -0.516 6.516 8 C -0.132 4.132 9 C -0.066 4.066 10 C -0.085 4.085 11 C -0.121 4.121 12 C 0.091 3.909 13 F -0.135 7.135 14 C -0.130 4.130 15 C -0.123 4.123 16 C 0.093 3.907 17 F -0.130 7.130 18 N -0.345 5.345 19 C 0.257 3.743 20 C -0.542 4.542 21 H 0.064 0.936 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.275 1.275 28 N -0.286 5.286 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.161 0.839 33 H 0.417 0.583 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.056 0.944 42 H 0.044 0.956 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.180 21.381 -3.045 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.328 4.328 4 C 0.078 3.922 5 N -0.287 5.287 6 C 0.307 3.693 7 O -0.390 6.390 8 C -0.172 4.172 9 C -0.104 4.104 10 C -0.086 4.086 11 C -0.140 4.140 12 C 0.072 3.928 13 F -0.114 7.114 14 C -0.149 4.149 15 C -0.142 4.142 16 C 0.074 3.926 17 F -0.108 7.108 18 N -0.130 5.130 19 C 0.139 3.861 20 C -0.580 4.580 21 H 0.082 0.918 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.733 3.267 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.200 1.200 28 N -0.111 5.111 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.179 0.821 33 H 0.253 0.747 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.756 20.279 -3.101 20.699 hybrid contribution 1.187 0.226 0.970 1.549 sum 3.942 20.505 -2.131 20.989 Atomic orbital electron populations 1.20015 0.87600 1.02316 1.02135 1.22037 0.96516 0.91075 1.01874 1.21267 0.89070 1.00426 1.21992 1.17955 0.88082 0.83355 1.02763 1.42829 1.08302 1.05694 1.71864 1.20517 0.91401 0.81326 0.76020 1.90640 1.26878 1.73735 1.47785 1.21606 0.96294 0.93699 1.05612 1.20326 0.93358 0.90814 1.05861 1.19795 0.98195 0.99381 0.91189 1.21003 0.95816 0.98006 0.99137 1.17674 0.95181 0.98184 0.81763 1.91534 1.87209 1.86246 1.46381 1.20998 1.01461 1.01937 0.90460 1.21005 0.95707 0.97998 0.99456 1.17573 0.95214 0.98303 0.81535 1.91540 1.87135 1.86192 1.45949 1.49354 1.06532 1.02220 1.54918 1.19611 0.77820 0.89778 0.98874 1.21305 1.13350 1.32021 0.91329 0.91768 1.24933 0.95682 0.94833 0.98197 1.69907 1.19155 1.32476 1.31208 0.86409 0.78111 0.78504 0.83652 1.19846 1.20877 1.19989 1.77352 0.86150 1.21825 1.25764 0.91333 0.91157 0.91567 0.82136 0.74656 0.87871 0.88163 0.89011 0.88891 0.83424 0.83752 0.83606 0.92564 0.93831 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.55 16 2 C 0.05 1.01 7.21 -82.44 -0.59 0.41 16 3 C -0.30 -6.05 9.58 -39.78 -0.38 -6.43 16 4 C 0.30 6.31 7.66 -153.16 -1.17 5.14 16 5 N -0.64 -10.89 5.42 -11.46 -0.06 -10.95 16 6 C 0.52 7.69 7.79 -10.98 -0.09 7.61 16 7 O -0.52 -8.89 13.11 5.55 0.07 -8.81 16 8 C -0.13 -1.34 5.68 -27.88 -0.16 -1.50 16 9 C -0.07 -0.63 4.41 -27.88 -0.12 -0.75 16 10 C -0.08 -0.73 5.14 -104.57 -0.54 -1.27 16 11 C -0.12 -0.97 9.66 -39.52 -0.38 -1.35 16 12 C 0.09 0.75 7.30 -39.42 -0.29 0.46 16 13 F -0.14 -1.24 17.27 2.25 0.04 -1.20 16 14 C -0.13 -0.87 10.02 -39.52 -0.40 -1.27 16 15 C -0.12 -0.85 10.02 -39.52 -0.40 -1.25 16 16 C 0.09 0.81 7.24 -39.42 -0.29 0.53 16 17 F -0.13 -1.30 16.56 2.25 0.04 -1.26 16 18 N -0.34 -8.09 3.60 -61.57 -0.22 -8.31 16 19 C 0.26 6.40 6.01 -5.19 -0.03 6.37 16 20 C -0.54 -14.49 9.39 -34.44 -0.32 -14.81 16 21 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -24.20 13.29 55.43 0.74 -23.46 16 24 Si 0.91 20.56 29.54 -169.99 -5.02 15.53 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 28 N -0.29 -6.68 12.56 33.65 0.42 -6.26 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.16 3.17 5.83 -52.49 -0.31 2.87 16 33 H 0.42 6.53 7.96 -40.82 -0.33 6.20 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.95 7.75 -51.93 -0.40 0.55 16 37 H 0.09 0.87 8.01 -51.93 -0.42 0.45 16 38 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -31.77 381.88 -8.31 -40.08 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.19 Total: 5.87 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -4.88 Total: -6.98 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.88 Total: -48.98 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.08 Total: -2.46 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.77 -8.31 -40.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058213501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.325 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds