Wall clock time and date at job start Tue Mar 31 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47446 * 356.35566 * 3 2 1 5 5 C 1.36881 * 119.99735 * 287.73524 * 4 3 2 6 6 H 1.08001 * 119.99965 * 166.61294 * 5 4 3 7 7 C 1.39049 * 119.99782 * 346.60561 * 5 4 3 8 8 N 1.31355 * 120.00309 * 36.49308 * 7 5 4 9 9 Si 1.86801 * 119.99794 * 216.49027 * 7 5 4 10 10 H 1.48498 * 109.47182 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46638 * 120.00168 * 9 7 5 12 12 H 1.48492 * 109.47375 * 239.99881 * 9 7 5 13 13 C 1.34776 * 120.00623 * 107.73005 * 4 3 2 14 14 O 1.21590 * 120.00193 * 186.42203 * 13 4 3 15 15 C 1.47724 * 119.99595 * 6.42632 * 13 4 3 16 16 C 1.39644 * 120.15183 * 141.68622 * 15 13 4 17 17 C 1.37941 * 119.84792 * 180.02562 * 16 15 13 18 18 C 1.38373 * 120.14909 * 359.97438 * 17 16 15 19 19 S 1.76209 * 119.84610 * 179.97438 * 18 17 16 20 20 O 1.42100 * 106.39947 * 203.54475 * 19 18 17 21 21 O 1.42104 * 106.39974 * 336.45705 * 19 18 17 22 22 N 1.65600 * 107.21948 * 90.00029 * 19 18 17 23 23 C 1.46504 * 119.99831 * 65.00023 * 22 19 18 24 24 C 1.53000 * 117.49680 * 213.62280 * 23 22 19 25 25 C 1.52994 * 117.49681 * 144.99862 * 23 22 19 26 26 C 1.38375 * 120.30844 * 0.25776 * 18 17 16 27 27 C 1.37943 * 120.14816 * 359.48941 * 26 18 17 28 28 H 1.08999 * 109.46952 * 236.34648 * 3 2 1 29 29 H 1.09004 * 109.46746 * 116.35494 * 3 2 1 30 30 H 0.96997 * 120.00443 * 179.97438 * 8 7 5 31 31 H 1.08005 * 120.07858 * 359.97438 * 16 15 13 32 32 H 1.07997 * 119.92263 * 179.97438 * 17 16 15 33 33 H 0.96994 * 119.99950 * 245.00308 * 22 19 18 34 34 H 1.09001 * 115.54996 * 359.32937 * 23 22 19 35 35 H 1.08997 * 117.49957 * 359.97438 * 24 23 22 36 36 H 1.09001 * 117.49741 * 145.02096 * 24 23 22 37 37 H 1.09002 * 117.50183 * 214.97681 * 25 23 22 38 38 H 1.08997 * 117.50014 * 359.97438 * 25 23 22 39 39 H 1.08003 * 119.92642 * 179.74045 * 26 18 17 40 40 H 1.07999 * 120.07047 * 180.25381 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0971 -1.3774 0.0878 5 6 2.9851 -2.0698 1.2633 6 1 3.1401 -3.1385 1.2774 7 6 2.6718 -1.3970 2.4392 8 7 1.8326 -0.3868 2.4144 9 14 3.4444 -1.9299 4.0543 10 1 4.3481 -3.0835 3.8139 11 1 4.2233 -0.8023 4.6262 12 1 2.3765 -2.3272 5.0066 13 6 3.6571 -1.9638 -0.9888 14 8 3.9563 -3.1417 -0.9528 15 6 3.9076 -1.1751 -2.2125 16 6 5.0685 -1.3881 -2.9589 17 6 5.2964 -0.6478 -4.1003 18 6 4.3774 0.3037 -4.5064 19 16 4.6769 1.2454 -5.9654 20 8 3.9253 2.4438 -5.8307 21 8 6.0827 1.2287 -6.1722 22 7 4.0080 0.4137 -7.2316 23 6 2.5571 0.2214 -7.2968 24 6 2.0442 -1.0826 -7.9113 25 6 1.9045 0.2327 -8.6805 26 6 3.2273 0.5233 -3.7691 27 6 2.9843 -0.2135 -2.6285 28 1 2.9711 0.5703 0.8554 29 1 2.9711 0.4571 -0.9209 30 1 1.6137 0.0822 3.2347 31 1 5.7868 -2.1301 -2.6427 32 1 6.1940 -0.8112 -4.6781 33 1 4.5768 0.0538 -7.9300 34 1 1.9889 0.6456 -6.4689 35 1 2.7863 -1.7971 -8.2675 36 1 1.1385 -1.5165 -7.4877 37 1 0.9068 0.6639 -8.7630 38 1 2.5545 0.3836 -9.5423 39 1 2.5163 1.2704 -4.0895 40 1 2.0843 -0.0440 -2.0562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058224428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:41 Heat of formation + Delta-G solvation = 13.332798 kcal Electronic energy + Delta-G solvation = -28055.253743 eV Core-core repulsion = 23964.927226 eV Total energy + Delta-G solvation = -4090.326518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 349.093 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -40.03028 -38.10175 -37.92432 -37.29071 -36.05433 -35.97520 -34.46555 -32.59239 -32.41067 -31.12673 -30.99751 -27.71577 -25.73869 -23.46654 -22.84323 -22.66603 -22.30776 -20.05416 -19.80389 -18.34191 -18.24875 -17.54176 -17.02740 -16.61870 -16.38417 -15.72326 -15.20860 -15.00288 -14.82949 -14.66064 -14.39810 -13.94370 -13.80242 -13.37383 -13.25155 -13.03137 -12.75077 -12.53565 -12.44653 -12.30706 -12.20183 -12.14864 -12.11447 -11.84056 -11.78398 -11.47752 -11.38238 -11.14338 -10.93774 -10.76965 -10.72621 -10.51784 -10.48440 -9.40923 -9.23063 -9.20960 -8.94928 -8.77168 -8.47715 -6.94183 -4.11290 0.20881 0.65261 1.35221 2.70347 2.91929 3.09776 3.15492 3.20645 3.46130 3.52972 3.65970 3.75560 3.90102 3.99192 4.19108 4.40298 4.48565 4.57385 4.62303 4.63429 4.71936 4.88106 4.89081 5.13143 5.19601 5.35002 5.35139 5.44589 5.59485 5.69697 5.78252 5.79185 5.87275 5.95404 6.08210 6.16824 6.35057 6.45900 6.61579 6.84180 7.14764 7.63848 8.01056 8.61258 8.72692 8.89130 9.47779 10.10624 Molecular weight = 349.09amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.002920 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.828701 B = 9586.069243 C = 9959.366312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.250 3.750 3 C 0.184 3.816 4 N -0.416 5.416 5 C -0.326 4.326 6 H 0.119 0.881 7 C 0.050 3.950 8 N -0.838 5.838 9 Si 0.917 3.083 10 H -0.261 1.261 11 H -0.274 1.274 12 H -0.280 1.280 13 C 0.462 3.538 14 O -0.570 6.570 15 C -0.031 4.031 16 C -0.101 4.101 17 C -0.020 4.020 18 C -0.682 4.682 19 S 2.701 3.299 20 O -0.955 6.955 21 O -0.960 6.960 22 N -1.089 6.089 23 C 0.084 3.916 24 C -0.189 4.189 25 C -0.187 4.187 26 C -0.024 4.024 27 C -0.141 4.141 28 H 0.122 0.878 29 H 0.110 0.890 30 H 0.281 0.719 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.418 0.582 34 H 0.138 0.862 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.140 0.860 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 4.237 -16.878 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.068 4.068 3 C 0.057 3.943 4 N -0.134 5.134 5 C -0.452 4.452 6 H 0.137 0.863 7 C -0.159 4.159 8 N -0.472 5.472 9 Si 0.741 3.259 10 H -0.185 1.185 11 H -0.199 1.199 12 H -0.206 1.206 13 C 0.253 3.747 14 O -0.455 6.455 15 C -0.035 4.035 16 C -0.121 4.121 17 C -0.040 4.040 18 C -0.771 4.771 19 S 2.792 3.208 20 O -0.945 6.945 21 O -0.950 6.950 22 N -0.844 5.844 23 C -0.024 4.024 24 C -0.228 4.228 25 C -0.226 4.226 26 C -0.043 4.043 27 C -0.161 4.161 28 H 0.140 0.860 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.252 0.748 34 H 0.156 0.844 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.158 0.842 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.643 4.680 -16.561 17.411 hybrid contribution 0.493 -0.918 1.210 1.597 sum 3.136 3.762 -15.351 16.113 Atomic orbital electron populations 1.80910 1.13251 1.07901 1.12098 1.28745 0.94844 0.92921 0.90273 1.19725 0.82437 0.87132 1.04970 1.43690 1.48113 1.10796 1.10767 1.19775 1.48399 0.95013 0.82029 0.86316 1.25396 0.94239 0.95705 1.00539 1.69983 1.24234 1.22326 1.30697 0.86044 0.79882 0.79577 0.80381 1.18501 1.19907 1.20614 1.17678 0.86359 0.87617 0.83045 1.90667 1.57778 1.15012 1.82056 1.20648 0.94167 0.93458 0.95212 1.21289 0.96872 0.99476 0.94435 1.20779 0.96598 0.91288 0.95321 1.30682 1.05413 1.17773 1.23227 1.01637 0.72887 0.73495 0.72775 1.93594 1.72702 1.42100 1.86106 1.93594 1.29331 1.86701 1.85354 1.55162 1.13510 1.75364 1.40397 1.21335 0.80111 1.02273 0.98731 1.23424 1.03807 0.91454 1.04104 1.23379 1.02688 1.01170 0.95368 1.20785 0.94196 0.96359 0.93004 1.21825 1.00514 0.96466 0.97299 0.86012 0.87292 0.90803 0.84203 0.84209 0.74786 0.84446 0.88204 0.87726 0.87799 0.88325 0.84209 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.59 18.54 42.16 0.78 -9.81 16 2 C 0.25 5.35 11.68 -20.76 -0.24 5.10 16 3 C 0.18 3.56 4.80 -6.83 -0.03 3.52 16 4 N -0.42 -9.38 2.67 -119.06 -0.32 -9.70 16 5 C -0.33 -8.09 9.12 -15.00 -0.14 -8.23 16 6 H 0.12 3.15 7.42 -52.49 -0.39 2.76 16 7 C 0.05 1.17 5.00 -17.45 -0.09 1.08 16 8 N -0.84 -19.57 9.03 55.50 0.50 -19.07 16 9 Si 0.92 18.45 29.68 -169.99 -5.04 13.41 16 10 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 11 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 12 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 13 C 0.46 10.19 7.31 -12.38 -0.09 10.10 16 14 O -0.57 -14.49 16.51 5.29 0.09 -14.40 16 15 C -0.03 -0.54 5.41 -104.97 -0.57 -1.10 16 16 C -0.10 -1.53 9.63 -39.17 -0.38 -1.91 16 17 C -0.02 -0.26 9.50 -39.64 -0.38 -0.64 16 18 C -0.68 -8.41 5.95 -39.48 -0.24 -8.65 16 19 S 2.70 29.86 5.71 -107.50 -0.61 29.25 16 20 O -0.96 -12.92 17.02 -57.17 -0.97 -13.89 16 21 O -0.96 -12.70 17.27 -57.17 -0.99 -13.68 16 22 N -1.09 -8.81 6.04 -4.89 -0.03 -8.84 16 23 C 0.08 0.66 6.47 -67.93 -0.44 0.22 16 24 C -0.19 -1.28 10.46 -26.73 -0.28 -1.56 16 25 C -0.19 -1.20 10.46 -26.73 -0.28 -1.48 16 26 C -0.02 -0.31 9.50 -39.64 -0.38 -0.69 16 27 C -0.14 -2.16 7.36 -39.16 -0.29 -2.45 16 28 H 0.12 2.38 6.55 -51.93 -0.34 2.04 16 29 H 0.11 1.75 3.82 -51.93 -0.20 1.55 16 30 H 0.28 6.23 8.31 -40.82 -0.34 5.89 16 31 H 0.14 2.06 8.05 -52.48 -0.42 1.64 16 32 H 0.14 1.46 7.60 -52.49 -0.40 1.06 16 33 H 0.42 2.50 8.96 -34.47 -0.31 2.19 16 34 H 0.14 1.03 8.11 -51.93 -0.42 0.61 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.14 1.48 7.60 -52.48 -0.40 1.08 16 40 H 0.14 2.21 4.53 -52.49 -0.24 1.98 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -32.77 359.96 -8.92 -41.69 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -3.94 Total: 6.29 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -3.81 Total: -6.68 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.94 Total: -47.42 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.87 Total: -41.97 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.04 Total: 13.41 kcal Atomic # 16 Polarization: 29.86 SS G_CDS: -0.61 Total: 29.25 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.77 -8.92 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058224428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.026 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds