Wall clock time and date at job start Tue Mar 31 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34518 * 125.79439 * 2 1 4 4 C 1.41376 * 106.84271 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.58210 * 179.97438 * 4 3 2 6 6 C 1.52997 * 110.53805 * 245.84272 * 5 4 3 7 7 N 1.47314 * 110.59855 * 8.67231 * 5 4 3 8 8 C 1.34522 * 106.62117 * 118.52577 * 7 5 4 9 9 O 1.21543 * 123.76802 * 179.97438 * 8 7 5 10 10 N 1.33790 * 112.45687 * 0.02562 * 8 7 5 11 11 C 1.46505 * 124.17602 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47131 * 89.97424 * 11 10 8 13 13 O 1.21279 * 119.99839 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99716 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99792 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47339 * 179.97438 * 15 14 12 17 17 H 1.08008 * 119.99809 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00484 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99555 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00531 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46880 * 90.00299 * 20 18 16 22 22 H 1.48494 * 109.47075 * 210.00519 * 20 18 16 23 23 H 1.48505 * 109.46676 * 330.00642 * 20 18 16 24 24 C 1.34766 * 111.64618 * 0.02562 * 10 8 7 25 25 O 1.21236 * 127.15657 * 180.02562 * 24 10 8 26 26 C 1.34522 * 106.84317 * 0.02562 * 4 3 2 27 27 C 1.50701 * 125.79043 * 180.02562 * 26 4 3 28 28 O 1.34300 * 108.41542 * 0.26001 * 26 4 3 29 29 H 1.09000 * 109.47108 * 89.99721 * 1 2 3 30 30 H 1.08987 * 109.47628 * 209.99923 * 1 2 3 31 31 H 1.09000 * 109.46648 * 330.00018 * 1 2 3 32 32 H 1.07995 * 126.57434 * 0.05759 * 3 2 1 33 33 H 1.08997 * 109.47086 * 63.76272 * 6 5 4 34 34 H 1.08997 * 109.47592 * 183.76908 * 6 5 4 35 35 H 1.09008 * 109.47086 * 303.77472 * 6 5 4 36 36 H 0.97002 * 126.68533 * 298.56499 * 7 5 4 37 37 H 1.09003 * 109.46932 * 209.97922 * 11 10 8 38 38 H 1.09003 * 109.46945 * 329.97680 * 11 10 8 39 39 H 0.97003 * 120.00526 * 359.97438 * 14 12 11 40 40 H 1.09003 * 109.47472 * 300.00168 * 15 14 12 41 41 H 1.08995 * 109.47322 * 60.00095 * 15 14 12 42 42 H 0.96999 * 119.99844 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.47065 * 95.30804 * 27 26 4 44 44 H 1.08994 * 109.47120 * 335.30443 * 27 26 4 45 45 H 1.09002 * 109.46797 * 215.30996 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 4.8733 1.4848 -0.0014 6 6 5.6470 1.3049 -1.3090 7 7 4.5292 2.9020 0.2065 8 6 5.1328 3.2812 1.3474 9 8 5.0547 4.4011 1.8131 10 7 5.8295 2.2880 1.9114 11 6 6.5852 2.4185 3.1598 12 6 5.6933 2.0753 4.3251 13 8 4.5403 1.7530 4.1318 14 7 6.1775 2.1256 5.5818 15 6 5.3107 1.7914 6.7146 16 6 6.0883 1.9246 7.9986 17 1 7.1245 2.2282 7.9734 18 6 5.4768 1.6598 9.2056 19 7 4.2148 1.2906 9.2363 20 14 6.4404 1.8255 10.7973 21 1 6.3056 3.2105 11.3156 22 1 5.9087 0.8678 11.7998 23 1 7.8731 1.5299 10.5415 24 6 5.7503 1.1528 1.1895 25 8 6.2708 0.0872 1.4412 26 6 3.5814 -0.7124 -0.0015 27 6 4.7705 -1.6381 -0.0019 28 8 2.2924 -1.0894 -0.0073 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 1.9666 2.1203 0.0009 33 1 5.0407 1.6610 -2.1418 34 1 6.5742 1.8762 -1.2642 35 1 5.8773 0.2492 -1.4527 36 1 3.9750 3.4540 -0.3672 37 1 7.4371 1.7387 3.1415 38 1 6.9406 3.4437 3.2639 39 1 7.1001 2.3823 5.7363 40 1 4.4588 2.4712 6.7332 41 1 4.9553 0.7664 6.6102 42 1 3.7846 1.1039 10.0854 43 1 4.9986 -1.9369 1.0212 44 1 5.6308 -1.1242 -0.4307 45 1 4.5422 -2.5226 -0.5965 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058227009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:35 Heat of formation + Delta-G solvation = -61.097627 kcal Electronic energy + Delta-G solvation = -31636.443472 eV Core-core repulsion = 27235.969633 eV Total energy + Delta-G solvation = -4400.473840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 349.152 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.16226 -42.25517 -38.80596 -38.67418 -36.67317 -35.35877 -34.19790 -33.18882 -33.10504 -32.35860 -30.33072 -29.72178 -29.15444 -26.84191 -25.51414 -24.28569 -23.02973 -22.73837 -21.45617 -21.25855 -19.82111 -19.37214 -18.11297 -17.61183 -16.92187 -16.58674 -16.28657 -16.20220 -15.80324 -15.64717 -15.44124 -14.86923 -14.66989 -14.57478 -14.19843 -14.07169 -13.84591 -13.64736 -13.45165 -13.34117 -13.05469 -12.88609 -12.83364 -12.68380 -12.56488 -12.50202 -11.98525 -11.94627 -11.82445 -11.54439 -11.00167 -10.88334 -10.83772 -10.42734 -10.35677 -10.23113 -9.78722 -9.68085 -9.40721 -9.00003 -8.74829 -8.33371 -7.93781 -6.16360 -4.23600 1.45077 1.61130 2.02763 2.32675 2.72696 2.96742 3.02874 3.22731 3.25206 3.30954 3.33492 3.76360 4.04591 4.13201 4.36642 4.47096 4.55668 4.76731 4.88326 5.01473 5.05940 5.12410 5.19621 5.19848 5.23640 5.26662 5.28750 5.40878 5.43308 5.52536 5.53442 5.61097 5.68076 5.75048 5.84725 6.12878 6.30422 6.65481 6.95493 7.01261 7.25804 7.30460 7.36833 7.50493 7.63958 7.95704 8.07121 8.54591 8.74424 9.00999 9.42579 10.93893 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.002853 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.442293 B = 9811.968819 C =10617.111895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.015 4.015 3 C -0.184 4.184 4 C -0.194 4.194 5 C 0.204 3.796 6 C -0.146 4.146 7 N -0.716 5.716 8 C 0.712 3.288 9 O -0.537 6.537 10 N -0.555 5.555 11 C 0.096 3.904 12 C 0.485 3.515 13 O -0.543 6.543 14 N -0.705 5.705 15 C 0.251 3.749 16 C -0.543 4.543 17 H 0.064 0.936 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.539 3.461 25 O -0.457 6.457 26 C 0.027 3.973 27 C -0.079 4.079 28 O -0.169 6.169 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.148 0.852 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.438 0.562 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.392 0.608 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.266 0.734 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 -1.655 -26.017 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 C -0.203 4.203 4 C -0.197 4.197 5 C 0.112 3.888 6 C -0.204 4.204 7 N -0.380 5.380 8 C 0.413 3.587 9 O -0.409 6.409 10 N -0.300 5.300 11 C -0.029 4.029 12 C 0.268 3.732 13 O -0.422 6.422 14 N -0.354 5.354 15 C 0.131 3.869 16 C -0.582 4.582 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.732 3.268 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C 0.325 3.675 25 O -0.326 6.326 26 C -0.024 4.024 27 C -0.135 4.135 28 O -0.065 6.065 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.166 0.834 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.283 0.717 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.225 0.775 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.099 -2.221 -25.497 25.594 hybrid contribution 0.495 0.707 0.997 1.319 sum 0.594 -1.514 -24.500 24.554 Atomic orbital electron populations 1.20297 0.84867 1.04394 1.03290 1.22337 0.94049 0.83766 1.06323 1.21181 0.91089 0.99597 1.08441 1.19509 0.93755 0.92849 1.13570 1.19377 0.91955 0.81645 0.95800 1.22087 1.00065 1.04225 0.93995 1.45435 1.54997 1.11396 1.26156 1.15725 0.78317 0.84032 0.80645 1.91020 1.64663 1.19207 1.66049 1.45766 1.47902 1.12696 1.23650 1.21605 0.94265 1.06082 0.80955 1.20514 0.88611 0.79334 0.84773 1.90701 1.18072 1.48294 1.85098 1.46370 1.15839 1.67103 1.06122 1.19134 0.89962 0.96581 0.81256 1.21212 0.97911 1.48379 0.90663 0.91766 1.24962 0.94998 0.94659 0.99424 1.69983 1.10795 1.44830 1.26665 0.86392 0.79923 0.78024 0.82440 1.20435 1.21007 1.19692 1.20631 0.79638 0.83352 0.83838 1.90761 1.46237 1.23258 1.72351 1.22223 0.83615 0.93664 1.02908 1.20603 0.90797 0.97373 1.04688 1.83992 1.15970 1.35012 1.71557 0.90175 0.90426 0.89213 0.83428 0.89989 0.90896 0.89605 0.71741 0.86058 0.85874 0.77478 0.95447 0.95471 0.92431 0.88972 0.88661 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.42 36.00 0.38 -0.20 16 2 C -0.02 -0.18 7.32 -35.63 -0.26 -0.44 16 3 C -0.18 -2.22 10.19 -39.70 -0.40 -2.63 16 4 C -0.19 -2.44 4.90 -104.74 -0.51 -2.95 16 5 C 0.20 2.29 1.01 -133.25 -0.13 2.16 16 6 C -0.15 -1.07 8.85 37.16 0.33 -0.74 16 7 N -0.72 -8.09 5.37 -54.02 -0.29 -8.38 16 8 C 0.71 10.98 8.62 -88.03 -0.76 10.22 16 9 O -0.54 -9.92 17.48 5.33 0.09 -9.82 16 10 N -0.56 -8.56 2.09 -122.02 -0.26 -8.82 16 11 C 0.10 1.45 6.18 -5.19 -0.03 1.42 16 12 C 0.49 10.14 7.90 -10.99 -0.09 10.06 16 13 O -0.54 -13.86 16.43 5.56 0.09 -13.76 16 14 N -0.71 -15.13 5.55 -61.47 -0.34 -15.47 16 15 C 0.25 6.81 5.43 -5.19 -0.03 6.79 16 16 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 17 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 20 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.54 7.75 6.76 -10.56 -0.07 7.67 16 25 O -0.46 -7.00 14.50 5.60 0.08 -6.92 16 26 C 0.03 0.34 7.20 -35.62 -0.26 0.09 16 27 C -0.08 -0.81 8.53 36.01 0.31 -0.50 16 28 O -0.17 -2.23 10.65 5.71 0.06 -2.17 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.60 8.14 -51.94 -0.42 0.17 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.15 1.54 8.00 -52.49 -0.42 1.12 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.57 5.71 -51.92 -0.30 0.27 16 36 H 0.44 3.69 8.96 -40.82 -0.37 3.32 16 37 H 0.12 1.47 8.00 -51.93 -0.42 1.05 16 38 H 0.12 1.59 7.86 -51.93 -0.41 1.18 16 39 H 0.39 6.98 8.32 -40.82 -0.34 6.64 16 40 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.09 1.11 7.61 -51.93 -0.40 0.72 16 44 H 0.10 0.86 4.47 -51.93 -0.23 0.62 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -38.19 384.23 -6.80 -44.98 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.79 Total: 6.88 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: -1.95 Total: 17.40 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.15 Total: -58.41 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: 0.33 Total: -32.68 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.19 -6.80 -44.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058227009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.115 kcal (2) G-P(sol) polarization free energy of solvation -38.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds