Wall clock time and date at job start Tue Mar 31 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34512 * 125.79318 * 2 1 4 4 C 1.41381 * 106.84381 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.58119 * 179.73210 * 4 3 2 6 6 C 1.53002 * 110.53246 * 4.78161 * 5 4 3 7 7 N 1.47303 * 110.60066 * 241.95006 * 5 4 3 8 8 C 1.34528 * 106.62064 * 241.47229 * 7 5 4 9 9 O 1.21540 * 123.77397 * 179.97438 * 8 7 5 10 10 N 1.33790 * 112.45507 * 0.02562 * 8 7 5 11 11 C 1.46500 * 124.17548 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.46940 * 89.97191 * 11 10 8 13 13 O 1.21283 * 120.00030 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00129 * 179.97438 * 12 11 10 15 15 C 1.46495 * 120.00203 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47286 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00310 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99994 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00052 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00106 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47183 * 59.99832 * 20 18 16 22 22 H 1.48498 * 109.47259 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46935 * 300.00024 * 20 18 16 24 24 C 1.35114 * 111.68889 * 359.90532 * 10 8 7 25 25 O 1.21229 * 127.33890 * 180.09664 * 24 10 8 26 26 C 1.34516 * 106.84110 * 359.97438 * 4 3 2 27 27 C 1.50693 * 125.79123 * 179.97438 * 26 4 3 28 28 O 1.34307 * 125.78593 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46971 * 89.99761 * 1 2 3 30 30 H 1.08992 * 109.47364 * 210.00528 * 1 2 3 31 31 H 1.09003 * 109.47020 * 330.00814 * 1 2 3 32 32 H 1.08003 * 126.57623 * 0.02562 * 3 2 1 33 33 H 1.08994 * 109.47079 * 60.00024 * 6 5 4 34 34 H 1.09001 * 109.46913 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47213 * 299.99541 * 6 5 4 36 36 H 0.97006 * 126.69334 * 61.51201 * 7 5 4 37 37 H 1.09001 * 109.47721 * 209.97148 * 11 10 8 38 38 H 1.09001 * 109.47239 * 329.97910 * 11 10 8 39 39 H 0.97000 * 119.99959 * 0.02562 * 14 12 11 40 40 H 1.09008 * 109.47063 * 300.00383 * 15 14 12 41 41 H 1.09000 * 109.47256 * 59.99719 * 15 14 12 42 42 H 0.97003 * 119.99861 * 179.97438 * 19 18 16 43 43 H 1.08996 * 109.47303 * 84.44622 * 27 26 4 44 44 H 1.09004 * 109.46978 * 204.44797 * 27 26 4 45 45 H 1.08999 * 109.47061 * 324.44315 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0006 5 6 4.8733 1.4848 -0.0048 6 6 4.5077 2.9663 0.1081 7 7 5.6661 1.2379 -1.2215 8 6 6.8572 0.7629 -0.8148 9 8 7.7558 0.4537 -1.5725 10 7 6.9417 0.6679 0.5171 11 6 8.1234 0.1825 1.2342 12 6 9.0358 1.3419 1.5418 13 8 8.7288 2.4633 1.1966 14 7 10.1923 1.1328 2.2016 15 6 11.0788 2.2598 2.5012 16 6 12.2944 1.7606 3.2387 17 1 12.3963 0.7090 3.4623 18 6 13.2767 2.6464 3.6279 19 7 13.1530 3.9270 3.3552 20 14 14.7832 2.0276 4.5428 21 1 15.5040 1.0407 3.6991 22 1 15.6826 3.1699 4.8452 23 1 14.3611 1.3801 5.8107 24 6 5.8040 1.0772 1.1201 25 8 5.5738 1.1117 2.3098 26 6 3.5814 -0.7123 0.0015 27 6 4.7705 -1.6380 0.0019 28 8 2.2924 -1.0895 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5137 32 1 1.9666 2.1204 0.0004 33 1 3.9656 3.1368 1.0382 34 1 5.4176 3.5665 0.1021 35 1 3.8797 3.2509 -0.7360 36 1 5.3846 1.3890 -2.1374 37 1 7.8139 -0.2931 2.1648 38 1 8.6525 -0.5415 0.6145 39 1 10.4376 0.2359 2.4781 40 1 11.3888 2.7357 1.5707 41 1 10.5495 2.9839 3.1206 42 1 13.8439 4.5502 3.6294 43 1 5.1186 -1.7820 1.0247 44 1 4.4824 -2.5997 -0.4228 45 1 5.5706 -1.2018 -0.5962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058227010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:38 Heat of formation + Delta-G solvation = -61.335567 kcal Electronic energy + Delta-G solvation = -31400.743263 eV Core-core repulsion = 27000.259106 eV Total energy + Delta-G solvation = -4400.484157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 349.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.36642 -42.34023 -38.82477 -38.64761 -36.71707 -35.29495 -34.21129 -33.49598 -33.12671 -32.37101 -30.91931 -29.47607 -29.15490 -26.84634 -25.78997 -24.36487 -23.01858 -22.82511 -21.42356 -21.12296 -19.95426 -19.77857 -18.06568 -17.65780 -16.94436 -16.73557 -16.64072 -16.13771 -15.77542 -15.64207 -15.46702 -14.91734 -14.71267 -14.63853 -14.27553 -14.10198 -13.99694 -13.71750 -13.63953 -13.43303 -13.14348 -13.03051 -12.87384 -12.75251 -12.58123 -12.54012 -12.24986 -11.98090 -11.87064 -11.56451 -11.10327 -10.99073 -10.86798 -10.37359 -10.35730 -10.25801 -10.03864 -9.69716 -9.42893 -9.02631 -8.75143 -8.59783 -7.95317 -6.16681 -4.24021 1.23483 1.55117 1.83941 2.30788 2.46637 2.90690 2.97278 3.20320 3.26094 3.30696 3.32231 3.86408 4.02728 4.10784 4.23039 4.35419 4.36712 4.69070 4.79065 4.85409 4.93344 5.02582 5.06077 5.16611 5.19309 5.20022 5.22603 5.27296 5.29718 5.37048 5.43092 5.51702 5.55570 5.60156 5.80693 5.83993 6.08720 6.64500 6.75126 6.94142 7.24924 7.29847 7.35021 7.49632 7.62953 7.95137 8.04427 8.52958 8.73090 8.98994 9.42064 10.93450 Molecular weight = 349.15amu Principal moments of inertia in cm(-1) A = 0.024603 B = 0.002272 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.787512 B =12323.109878 C =12369.623541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.016 4.016 3 C -0.183 4.183 4 C -0.185 4.185 5 C 0.200 3.800 6 C -0.144 4.144 7 N -0.718 5.718 8 C 0.709 3.291 9 O -0.535 6.535 10 N -0.560 5.560 11 C 0.095 3.905 12 C 0.486 3.514 13 O -0.546 6.546 14 N -0.705 5.705 15 C 0.251 3.749 16 C -0.545 4.545 17 H 0.064 0.936 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.540 3.460 25 O -0.452 6.452 26 C 0.022 3.978 27 C -0.087 4.087 28 O -0.168 6.168 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.439 0.561 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.393 0.607 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.267 0.733 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.118 -10.213 -8.657 29.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.203 4.203 4 C -0.188 4.188 5 C 0.110 3.890 6 C -0.202 4.202 7 N -0.383 5.383 8 C 0.410 3.590 9 O -0.408 6.408 10 N -0.305 5.305 11 C -0.031 4.031 12 C 0.269 3.731 13 O -0.424 6.424 14 N -0.354 5.354 15 C 0.131 3.869 16 C -0.583 4.583 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C 0.326 3.674 25 O -0.319 6.319 26 C -0.029 4.029 27 C -0.143 4.143 28 O -0.065 6.065 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.172 0.828 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.283 0.717 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.225 0.775 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.859 -9.670 -8.545 28.900 hybrid contribution 1.006 -0.313 0.255 1.084 sum -24.853 -9.983 -8.290 28.037 Atomic orbital electron populations 1.20308 0.84762 1.04243 1.03560 1.22389 0.94045 0.83781 1.06338 1.21335 0.90915 0.99825 1.08180 1.19584 0.93928 0.92593 1.12660 1.19373 0.88407 0.97336 0.83926 1.21982 1.03721 0.90367 1.04179 1.45667 1.14025 1.69646 1.08918 1.15735 0.83314 0.78050 0.81855 1.91033 1.40230 1.53860 1.55701 1.45937 1.15730 1.61089 1.07783 1.21617 0.85215 0.97056 0.99165 1.20496 0.82987 0.90008 0.79605 1.90678 1.74227 1.24243 1.53263 1.46379 1.20073 1.13246 1.55680 1.19139 0.87375 0.83907 0.96503 1.21171 1.04279 0.94579 1.38251 0.91812 1.24960 0.98540 0.94725 0.95817 1.69968 1.34653 1.02023 1.45595 0.86448 0.81957 0.78305 0.80040 1.20029 1.21083 1.20033 1.20640 0.82097 0.75377 0.89317 1.90792 1.77541 1.49487 1.14113 1.22177 0.83535 0.93851 1.03374 1.20521 0.91381 0.98396 1.03996 1.83995 1.15858 1.35105 1.71496 0.90045 0.90495 0.89140 0.82786 0.89660 0.90294 0.90138 0.71680 0.86114 0.85794 0.77459 0.95395 0.95422 0.92363 0.89496 0.89575 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.42 36.01 0.38 0.05 16 2 C -0.02 -0.13 7.32 -35.63 -0.26 -0.39 16 3 C -0.18 -1.58 9.86 -39.70 -0.39 -1.97 16 4 C -0.18 -1.92 5.18 -104.74 -0.54 -2.46 16 5 C 0.20 2.28 1.09 -133.25 -0.15 2.14 16 6 C -0.14 -1.43 8.02 37.16 0.30 -1.13 16 7 N -0.72 -8.00 5.53 -54.03 -0.30 -8.29 16 8 C 0.71 10.47 6.64 -88.02 -0.58 9.89 16 9 O -0.54 -9.50 17.48 5.33 0.09 -9.41 16 10 N -0.56 -8.32 1.84 -121.92 -0.22 -8.54 16 11 C 0.09 1.38 6.18 -5.19 -0.03 1.35 16 12 C 0.49 9.90 7.90 -10.98 -0.09 9.81 16 13 O -0.55 -13.43 16.43 5.55 0.09 -13.33 16 14 N -0.71 -14.84 5.55 -61.47 -0.34 -15.18 16 15 C 0.25 6.72 5.43 -5.20 -0.03 6.69 16 16 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 17 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 20 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.54 7.91 5.82 -10.40 -0.06 7.85 16 25 O -0.45 -7.66 17.78 5.60 0.10 -7.56 16 26 C 0.02 0.23 7.23 -35.63 -0.26 -0.03 16 27 C -0.09 -0.77 9.14 36.00 0.33 -0.44 16 28 O -0.17 -1.71 10.65 5.68 0.06 -1.65 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.15 0.98 7.62 -52.48 -0.40 0.58 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.57 7.95 -51.93 -0.41 0.15 16 36 H 0.44 3.74 8.96 -40.82 -0.37 3.37 16 37 H 0.12 1.43 8.02 -51.93 -0.42 1.01 16 38 H 0.12 1.52 7.86 -51.93 -0.41 1.11 16 39 H 0.39 6.84 8.32 -40.82 -0.34 6.50 16 40 H 0.03 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.83 5.19 -51.93 -0.27 0.56 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -37.54 387.46 -6.72 -44.26 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.95 Total: 5.58 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: -1.80 Total: 17.90 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.13 Total: -57.55 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: 0.34 Total: -31.95 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.54 -6.72 -44.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058227010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.077 kcal (2) G-P(sol) polarization free energy of solvation -37.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds