Wall clock time and date at job start Tue Mar 31 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46956 * 2 1 4 4 N 1.46494 * 109.47299 * 179.97438 * 3 2 1 5 5 C 1.36868 * 120.00194 * 266.89027 * 4 3 2 6 6 H 1.07998 * 119.99945 * 141.43796 * 5 4 3 7 7 C 1.39050 * 119.99856 * 321.43960 * 5 4 3 8 8 N 1.31365 * 119.99543 * 159.62881 * 7 5 4 9 9 Si 1.86794 * 119.99960 * 339.62502 * 7 5 4 10 10 H 1.48506 * 109.46986 * 95.44392 * 9 7 5 11 11 H 1.48499 * 109.47347 * 215.44053 * 9 7 5 12 12 H 1.48498 * 109.47310 * 335.44516 * 9 7 5 13 13 C 1.34779 * 120.00249 * 86.88913 * 4 3 2 14 14 O 1.21604 * 120.00319 * 174.52542 * 13 4 3 15 15 C 1.47704 * 119.99388 * 354.52791 * 13 4 3 16 16 N 1.34207 * 125.65346 * 355.30216 * 15 13 4 17 17 C 1.30471 * 109.83382 * 180.02562 * 16 15 13 18 18 C 1.50703 * 125.84600 * 180.02562 * 17 16 15 19 19 N 1.35061 * 108.31094 * 0.02562 * 17 16 15 20 20 C 1.40151 * 126.75571 * 179.97438 * 19 17 16 21 21 C 1.38849 * 120.07308 * 311.19798 * 20 19 17 22 22 C 1.38104 * 119.94165 * 180.02562 * 21 20 19 23 23 C 1.38298 * 120.09659 * 0.02562 * 22 21 20 24 24 C 1.38253 * 120.14694 * 359.95356 * 23 22 21 25 25 C 1.38237 * 120.05691 * 0.05037 * 24 23 22 26 26 Cl 1.73597 * 120.04796 * 180.25145 * 25 24 23 27 27 N 1.31821 * 125.64444 * 175.63026 * 15 13 4 28 28 H 1.09001 * 109.46726 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47513 * 299.99669 * 1 2 3 30 30 H 1.08997 * 109.46945 * 60.00213 * 1 2 3 31 31 H 1.08991 * 109.47752 * 239.99971 * 2 1 3 32 32 H 1.09004 * 109.46865 * 119.99086 * 2 1 3 33 33 H 1.09004 * 109.47086 * 59.99696 * 3 2 1 34 34 H 1.08997 * 109.47120 * 299.99680 * 3 2 1 35 35 H 0.97001 * 119.99779 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47089 * 273.40082 * 18 17 16 37 37 H 1.09008 * 109.46923 * 33.39433 * 18 17 16 38 38 H 1.08995 * 109.47135 * 153.39635 * 18 17 16 39 39 H 1.08000 * 120.02437 * 0.04233 * 21 20 19 40 40 H 1.08000 * 119.94927 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.92667 * 179.97438 * 23 22 21 42 42 H 1.07999 * 119.97064 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1888 1.5071 1.1844 6 1 5.0921 0.9306 1.3183 7 6 3.7205 2.3150 2.2147 8 7 4.1082 2.0943 3.4503 9 14 2.5402 3.7140 1.8418 10 1 1.1444 3.2546 2.0568 11 1 2.8288 4.8586 2.7427 12 1 2.7088 4.1407 0.4295 13 6 4.1794 1.3791 -1.1646 14 8 5.3912 1.4794 -1.1719 15 6 3.4464 1.1878 -2.4325 16 7 2.1262 0.9758 -2.5486 17 6 1.8073 0.8488 -3.8074 18 6 0.4218 0.6012 -4.3461 19 7 2.9314 0.9772 -4.5450 20 6 3.0311 0.9060 -5.9411 21 6 2.4387 -0.1451 -6.6282 22 6 2.5391 -0.2129 -8.0040 23 6 3.2292 0.7643 -8.6980 24 6 3.8201 1.8128 -8.0177 25 6 3.7236 1.8867 -6.6407 26 17 4.4602 3.2069 -5.7873 27 7 3.9815 1.1910 -3.6372 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7812 2.6577 4.1691 36 1 0.2223 -0.4703 -4.3567 37 1 -0.3097 1.1007 -3.7108 38 1 0.3507 0.9941 -5.3603 39 1 1.8997 -0.9088 -6.0873 40 1 2.0780 -1.0302 -8.5386 41 1 3.3063 0.7083 -9.7738 42 1 4.3580 2.5745 -8.5625 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058258631.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:31 Heat of formation + Delta-G solvation = 104.445752 kcal Electronic energy + Delta-G solvation = -28643.559188 eV Core-core repulsion = 24652.858580 eV Total energy + Delta-G solvation = -3990.700608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.19531 -39.68374 -38.47823 -36.61166 -35.46709 -34.32558 -32.75045 -32.59877 -31.51663 -31.22278 -29.86852 -28.06966 -26.18184 -25.53844 -23.62234 -23.39799 -22.06058 -21.15521 -20.62704 -19.08080 -18.23418 -17.02565 -16.82511 -16.44761 -15.97687 -15.72971 -15.18041 -14.91248 -14.49855 -14.31655 -14.08544 -14.01330 -13.73048 -13.55393 -13.10017 -13.00605 -12.88867 -12.51162 -12.34703 -12.30753 -12.07574 -11.80433 -11.77426 -11.59011 -11.41344 -11.03903 -10.86469 -10.77534 -10.49004 -10.31803 -9.96782 -9.80432 -9.57724 -9.32437 -9.29963 -9.12213 -8.80259 -8.71561 -7.72944 -6.43722 -3.98517 0.41947 0.67831 1.62179 1.85362 2.19577 2.56762 3.07412 3.09877 3.25658 3.32680 3.92230 4.11923 4.15622 4.21710 4.31964 4.41794 4.59464 4.74051 4.77684 4.91467 4.95917 5.18991 5.25160 5.28693 5.36329 5.56644 5.64559 5.69792 5.73000 5.74872 5.84682 6.02720 6.11586 6.15056 6.28864 6.38252 6.50502 6.51050 6.55694 6.87031 6.90712 7.13529 7.51553 8.05978 8.24632 8.53096 8.90055 9.25345 9.73621 10.66787 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.003610 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.967900 B = 7754.246966 C = 8644.769638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.094 3.906 4 N -0.432 5.432 5 C -0.308 4.308 6 H 0.109 0.891 7 C 0.066 3.934 8 N -0.853 5.853 9 Si 0.879 3.121 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.263 1.263 13 C 0.532 3.468 14 O -0.544 6.544 15 C 0.218 3.782 16 N -0.499 5.499 17 C 0.273 3.727 18 C -0.076 4.076 19 N -0.349 5.349 20 C 0.158 3.842 21 C -0.107 4.107 22 C -0.100 4.100 23 C -0.104 4.104 24 C -0.099 4.099 25 C -0.028 4.028 26 Cl -0.033 7.033 27 N -0.246 5.246 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.276 0.724 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.903 -3.589 -24.271 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.029 4.029 4 N -0.152 5.152 5 C -0.436 4.436 6 H 0.126 0.874 7 C -0.142 4.142 8 N -0.489 5.489 9 Si 0.707 3.293 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.187 1.187 13 C 0.317 3.683 14 O -0.423 6.423 15 C -0.065 4.065 16 N -0.227 5.227 17 C -0.001 4.001 18 C -0.136 4.136 19 N -0.136 5.136 20 C 0.064 3.936 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.057 4.057 26 Cl -0.004 7.004 27 N -0.072 5.072 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.625 -3.259 -23.781 26.250 hybrid contribution -0.641 0.835 -0.136 1.061 sum -11.266 -2.424 -23.917 26.548 Atomic orbital electron populations 1.21624 0.96439 1.00568 1.01156 1.21676 0.94763 0.97398 1.01991 1.22103 0.81457 0.97692 1.01644 1.43547 1.04913 1.62258 1.04449 1.19097 1.11447 1.26581 0.86482 0.87354 1.25382 0.97195 0.96921 0.94674 1.69706 1.43017 1.37170 0.99000 0.86894 0.80457 0.82433 0.79550 1.19741 1.21298 1.18729 1.16521 0.86395 0.85179 0.80210 1.90710 1.12658 1.54035 1.84898 1.24797 0.88442 0.98433 0.94815 1.70987 1.13490 1.22941 1.15310 1.24716 0.91496 0.96721 0.87167 1.20447 0.87620 1.03982 1.01504 1.47815 1.06338 1.55152 1.04342 1.17232 1.01562 0.95387 0.79382 1.21125 1.00810 0.95888 0.94946 1.21113 0.98671 0.99218 0.92923 1.21253 0.96767 0.93597 1.00690 1.21073 0.99993 0.99648 0.91103 1.21078 0.99881 0.91839 0.92930 1.98451 1.80545 1.44417 1.76973 1.78838 1.07077 1.22896 0.98387 0.93498 0.93442 0.92833 0.91643 0.92048 0.91986 0.89569 0.91317 0.88900 0.88163 0.90151 0.84221 0.84248 0.84362 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.12 -2.28 5.67 -26.73 -0.15 -2.43 16 3 C 0.09 2.08 3.62 -4.04 -0.01 2.06 16 4 N -0.43 -11.31 2.16 -115.94 -0.25 -11.56 16 5 C -0.31 -9.00 9.32 -15.00 -0.14 -9.14 16 6 H 0.11 3.49 7.98 -52.49 -0.42 3.07 16 7 C 0.07 1.86 5.31 -17.45 -0.09 1.77 16 8 N -0.85 -24.73 13.95 55.50 0.77 -23.95 16 9 Si 0.88 21.40 24.95 -169.99 -4.24 17.16 16 10 H -0.27 -6.09 6.70 56.52 0.38 -5.71 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.26 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.53 14.17 7.61 -12.39 -0.09 14.08 16 14 O -0.54 -16.36 17.00 5.27 0.09 -16.27 16 15 C 0.22 4.88 7.46 -156.47 -1.17 3.71 16 16 N -0.50 -9.17 5.96 -8.57 -0.05 -9.22 16 17 C 0.27 3.98 7.83 -155.42 -1.22 2.76 16 18 C -0.08 -0.64 9.28 36.01 0.33 -0.31 16 19 N -0.35 -5.55 3.37 -8.01 -0.03 -5.58 16 20 C 0.16 1.97 5.93 -83.56 -0.50 1.48 16 21 C -0.11 -0.91 8.62 -39.40 -0.34 -1.25 16 22 C -0.10 -0.60 10.04 -39.61 -0.40 -1.00 16 23 C -0.10 -0.63 10.04 -39.55 -0.40 -1.03 16 24 C -0.10 -0.83 9.82 -39.58 -0.39 -1.22 16 25 C -0.03 -0.34 6.34 -39.32 -0.25 -0.59 16 26 Cl -0.03 -0.50 27.36 -51.86 -1.42 -1.92 16 27 N -0.25 -5.17 11.37 32.02 0.36 -4.80 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.25 6.53 -51.93 -0.34 0.92 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.42 3.41 -51.93 -0.18 1.25 16 34 H 0.09 1.82 5.69 -51.93 -0.30 1.52 16 35 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 38 H 0.08 0.53 7.30 -51.93 -0.38 0.15 16 39 H 0.14 0.97 7.60 -52.49 -0.40 0.57 16 40 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 41 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 363.69 15.07 5.48 5.48 Total: -1.00 -36.00 363.69 -8.69 -44.69 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.97 Total: -1.20 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -4.44 Total: 7.17 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.81 Total: -55.12 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.09 Total: -16.27 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.24 Total: 17.16 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.42 Total: -1.92 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.00 -8.69 -44.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058258631.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.136 kcal (2) G-P(sol) polarization free energy of solvation -35.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds