Wall clock time and date at job start Tue Mar 31 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47203 * 87.22669 * 3 2 1 5 5 N 1.46499 * 109.47487 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00316 * 270.00926 * 5 4 3 7 7 C 1.50705 * 109.46951 * 269.99259 * 6 5 4 8 8 H 1.08003 * 119.99842 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00231 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99950 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99872 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46979 * 89.99978 * 11 9 7 13 13 H 1.48504 * 109.47014 * 209.99765 * 11 9 7 14 14 H 1.48500 * 109.47139 * 329.99971 * 11 9 7 15 15 C 1.34778 * 119.99743 * 90.00133 * 5 4 3 16 16 O 1.21280 * 120.00239 * 180.02562 * 15 5 4 17 17 C 1.50704 * 120.00230 * 0.02562 * 15 5 4 18 18 S 1.81399 * 109.47361 * 180.02562 * 17 15 5 19 19 C 1.81393 * 103.00012 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.47230 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.47289 * 304.99815 * 20 19 18 22 22 O 1.42905 * 109.47264 * 64.99982 * 20 19 18 23 23 C 1.50701 * 109.47212 * 184.99897 * 20 19 18 24 24 C 1.38230 * 119.99878 * 279.72447 * 23 20 19 25 25 C 1.38243 * 119.99631 * 179.78728 * 24 23 20 26 26 C 1.38231 * 119.99827 * 0.44496 * 25 24 23 27 27 C 1.38229 * 120.00398 * 359.81209 * 26 25 24 28 28 C 1.38234 * 119.99919 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46694 * 327.23064 * 3 2 1 30 30 H 1.08994 * 109.47399 * 207.23101 * 3 2 1 31 31 H 1.09008 * 109.47219 * 60.00211 * 4 3 2 32 32 H 1.09002 * 109.47602 * 299.99922 * 4 3 2 33 33 H 1.08995 * 109.47215 * 29.98859 * 6 5 4 34 34 H 1.08999 * 109.47471 * 149.99658 * 6 5 4 35 35 H 0.97000 * 119.99954 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.47048 * 59.99773 * 17 15 5 37 37 H 1.09009 * 109.46947 * 300.00076 * 17 15 5 38 38 H 1.09004 * 109.47504 * 59.99884 * 19 18 17 39 39 H 1.09002 * 109.47111 * 300.00039 * 19 18 17 40 40 H 0.96705 * 113.99788 * 60.00095 * 22 20 19 41 41 H 1.08002 * 120.00498 * 0.02562 * 24 23 20 42 42 H 1.08002 * 119.99997 * 180.27329 * 25 24 23 43 43 H 1.08007 * 119.99687 * 179.83113 * 26 25 24 44 44 H 1.08005 * 120.00342 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.00529 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.0689 -1.4407 5 7 4.5831 -0.0676 -1.4408 6 6 5.3145 1.2002 -1.5023 7 6 5.5654 1.5661 -2.9425 8 1 5.2154 0.9187 -3.7330 9 6 6.2418 2.7272 -3.2511 10 7 6.6676 3.5158 -2.2886 11 14 6.5522 3.1810 -5.0364 12 1 5.4210 3.9991 -5.5430 13 1 7.8116 3.9614 -5.1370 14 1 6.6705 1.9433 -5.8484 15 6 5.2579 -1.2329 -1.3843 16 8 6.4707 -1.2320 -1.3839 17 6 4.5055 -2.5372 -1.3215 18 16 5.6854 -3.9133 -1.2538 19 6 4.6084 -5.3712 -1.1830 20 6 5.4663 -6.6365 -1.1214 21 1 6.1581 -6.6478 -1.9637 22 8 6.2048 -6.6524 0.1019 23 6 4.5759 -7.8507 -1.1864 24 6 3.9199 -8.2883 -0.0511 25 6 3.0998 -9.3995 -0.1118 26 6 2.9430 -10.0784 -1.3057 27 6 3.6031 -9.6439 -2.4397 28 6 4.4198 -8.5302 -2.3801 29 1 2.9717 -0.8633 0.5563 30 1 2.9710 0.9145 0.4702 31 1 2.7544 0.7951 -1.9971 32 1 2.7552 -0.9829 -1.9110 33 1 4.7248 1.9833 -1.0259 34 1 6.2670 1.0957 -0.9828 35 1 7.1437 4.3325 -2.5057 36 1 3.8792 -2.6384 -2.2078 37 1 3.8786 -2.5524 -0.4299 38 1 3.9795 -5.4020 -2.0728 39 1 3.9789 -5.3150 -0.2949 40 1 5.6519 -6.6436 0.8952 41 1 4.0451 -7.7598 0.8824 42 1 2.5837 -9.7388 0.7742 43 1 2.3043 -10.9481 -1.3524 44 1 3.4809 -10.1746 -3.3725 45 1 4.9353 -8.1904 -3.2662 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058264263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:52 Heat of formation + Delta-G solvation = -31.097980 kcal Electronic energy + Delta-G solvation = -26588.173530 eV Core-core repulsion = 22697.179355 eV Total energy + Delta-G solvation = -3890.994175 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.00092 -39.27784 -37.26899 -36.92324 -35.31901 -32.97330 -32.43969 -31.26733 -30.92479 -30.21499 -29.56338 -26.90049 -24.43185 -24.09482 -22.98370 -22.82141 -21.39320 -18.79373 -18.11688 -17.70481 -16.72110 -16.68870 -16.45671 -16.28525 -15.92825 -15.49393 -15.24715 -15.06591 -14.77373 -14.55926 -14.48016 -14.11116 -13.86635 -13.77683 -13.40467 -13.23512 -12.89874 -12.59529 -12.53332 -12.50368 -12.32394 -12.16979 -11.98149 -11.76044 -11.63243 -11.38121 -11.29700 -11.03758 -10.91944 -10.65615 -10.45874 -10.21507 -9.82000 -9.74594 -9.32955 -9.20512 -9.15505 -8.49535 -7.94478 -7.53281 -6.11186 -4.15985 0.86693 0.99254 1.49606 2.55461 2.65976 2.74221 3.16116 3.27475 3.34554 3.35132 3.39056 3.58406 4.09965 4.11907 4.23756 4.39911 4.41622 4.54868 4.64757 4.71900 4.73003 4.84730 4.95086 4.96794 5.06059 5.11495 5.12277 5.24111 5.26946 5.28541 5.40588 5.43704 5.54079 5.64259 5.75004 5.99143 6.03642 6.10939 6.16503 6.56866 6.84206 7.29565 7.29842 7.36195 7.50398 7.84326 8.12164 8.14814 8.74877 8.90952 9.49653 10.96984 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.002301 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.297716 B =12166.442258 C =13495.092977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.117 3.883 5 N -0.593 5.593 6 C 0.246 3.754 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.524 3.476 16 O -0.509 6.509 17 C -0.135 4.135 18 S -0.151 6.151 19 C -0.146 4.146 20 C 0.169 3.831 21 H 0.117 0.883 22 O -0.540 6.540 23 C -0.112 4.112 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.107 4.107 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.048 0.952 35 H 0.264 0.736 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.373 0.627 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 -23.509 4.786 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.010 4.010 5 N -0.325 5.325 6 C 0.127 3.873 7 C -0.569 4.569 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.308 3.692 16 O -0.384 6.384 17 C -0.287 4.287 18 S 0.076 5.924 19 C -0.295 4.295 20 C 0.108 3.892 21 H 0.135 0.865 22 O -0.345 6.345 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.136 4.136 28 C -0.125 4.125 29 H 0.123 0.877 30 H 0.137 0.863 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.221 0.779 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.400 -23.239 4.408 25.100 hybrid contribution -1.560 0.352 -0.665 1.732 sum -9.960 -22.887 3.744 25.239 Atomic orbital electron populations 1.81217 1.13021 1.09317 1.08599 1.29100 0.95091 0.92847 0.93137 1.19904 0.81358 1.06514 1.01467 1.21326 0.82189 1.04229 0.93240 1.48150 1.04825 1.07981 1.71573 1.19396 0.92677 0.77440 0.97765 1.21395 1.36976 1.06404 0.92091 0.92357 1.24915 0.95228 0.96189 0.97630 1.69913 1.38207 1.13224 1.31794 0.86508 0.77720 0.78500 0.84784 1.20664 1.21056 1.19832 1.19386 0.87849 0.83883 0.78064 1.90750 1.13193 1.86167 1.48295 1.23740 1.01972 0.96814 1.06156 1.87861 1.10874 0.96103 1.97583 1.24341 1.01948 0.97561 1.05604 1.20440 0.91585 0.87838 0.89312 0.86544 1.86722 1.36450 1.96605 1.14772 1.20511 0.98815 0.97638 0.94393 1.20901 0.96891 0.97212 0.97876 1.21138 0.98651 0.95702 0.98082 1.21209 0.99657 0.99920 0.93045 1.21183 0.97027 0.96751 0.98636 1.21065 0.98655 0.95434 0.97369 0.87669 0.86289 0.88506 0.90803 0.94530 0.93383 0.92617 0.87798 0.87980 0.89218 0.89935 0.77945 0.86086 0.85893 0.86020 0.85820 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.30 18.54 42.16 0.78 -5.52 16 2 C 0.22 2.49 15.43 -20.76 -0.32 2.17 16 3 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 4 C 0.12 1.48 5.17 -4.05 -0.02 1.46 16 5 N -0.59 -10.58 2.46 -175.06 -0.43 -11.01 16 6 C 0.25 5.73 5.16 -5.19 -0.03 5.71 16 7 C -0.53 -14.02 9.39 -34.44 -0.32 -14.34 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 11 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.52 9.59 7.69 -10.98 -0.08 9.51 16 16 O -0.51 -11.96 15.44 5.56 0.09 -11.87 16 17 C -0.14 -1.74 4.98 36.01 0.18 -1.56 16 18 S -0.15 -2.08 20.66 -107.50 -2.22 -4.30 16 19 C -0.15 -1.32 5.58 37.16 0.21 -1.11 16 20 C 0.17 1.52 3.20 -27.88 -0.09 1.43 16 21 H 0.12 1.14 8.00 -51.93 -0.42 0.72 16 22 O -0.54 -5.41 12.94 -35.23 -0.46 -5.86 16 23 C -0.11 -0.90 4.97 -104.62 -0.52 -1.42 16 24 C -0.11 -0.79 9.32 -39.58 -0.37 -1.16 16 25 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 26 C -0.12 -0.80 10.05 -39.59 -0.40 -1.20 16 27 C -0.12 -0.82 10.05 -39.59 -0.40 -1.22 16 28 C -0.11 -0.83 9.67 -39.58 -0.38 -1.21 16 29 H 0.11 0.82 7.22 -51.93 -0.38 0.45 16 30 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 1.32 8.07 -51.92 -0.42 0.90 16 32 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 33 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.10 1.15 7.40 -51.92 -0.38 0.76 16 37 H 0.10 0.99 7.19 -51.92 -0.37 0.61 16 38 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 40 H 0.37 2.42 7.50 45.56 0.34 2.76 16 41 H 0.12 0.63 6.78 -52.49 -0.36 0.27 16 42 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 44 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 45 H 0.13 0.82 8.04 -52.49 -0.42 0.40 16 LS Contribution 403.22 15.07 6.08 6.08 Total: -1.00 -34.93 403.22 -9.29 -44.22 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.62 Total: -0.08 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -3.22 Total: -3.20 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 1.09 Total: -41.13 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.37 Total: -17.74 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -2.08 SS G_CDS: -2.22 Total: -4.30 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.93 -9.29 -44.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058264263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.121 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds