Wall clock time and date at job start Tue Mar 31 2020 05:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47203 * 87.22669 * 3 2 1 5 5 N 1.46499 * 109.47487 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00316 * 270.00926 * 5 4 3 7 7 C 1.50705 * 109.46951 * 269.99259 * 6 5 4 8 8 H 1.08003 * 119.99842 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00231 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99950 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99872 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.46979 * 89.99978 * 11 9 7 13 13 H 1.48504 * 109.47014 * 209.99765 * 11 9 7 14 14 H 1.48500 * 109.47139 * 329.99971 * 11 9 7 15 15 C 1.34778 * 119.99743 * 90.00133 * 5 4 3 16 16 O 1.21280 * 120.00239 * 180.02562 * 15 5 4 17 17 C 1.50704 * 120.00230 * 0.02562 * 15 5 4 18 18 S 1.81399 * 109.47361 * 180.02562 * 17 15 5 19 19 C 1.81393 * 103.00012 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.47230 * 179.97438 * 19 18 17 21 21 H 1.09001 * 109.47289 * 304.99815 * 20 19 18 22 22 O 1.42905 * 109.47264 * 64.99982 * 20 19 18 23 23 C 1.50701 * 109.47212 * 184.99897 * 20 19 18 24 24 C 1.38230 * 119.99878 * 279.72447 * 23 20 19 25 25 C 1.38243 * 119.99631 * 179.78728 * 24 23 20 26 26 C 1.38231 * 119.99827 * 0.44496 * 25 24 23 27 27 C 1.38229 * 120.00398 * 359.81209 * 26 25 24 28 28 C 1.38234 * 119.99919 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46694 * 327.23064 * 3 2 1 30 30 H 1.08994 * 109.47399 * 207.23101 * 3 2 1 31 31 H 1.09008 * 109.47219 * 60.00211 * 4 3 2 32 32 H 1.09002 * 109.47602 * 299.99922 * 4 3 2 33 33 H 1.08995 * 109.47215 * 29.98859 * 6 5 4 34 34 H 1.08999 * 109.47471 * 149.99658 * 6 5 4 35 35 H 0.97000 * 119.99954 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.47048 * 59.99773 * 17 15 5 37 37 H 1.09009 * 109.46947 * 300.00076 * 17 15 5 38 38 H 1.09004 * 109.47504 * 59.99884 * 19 18 17 39 39 H 1.09002 * 109.47111 * 300.00039 * 19 18 17 40 40 H 0.96705 * 113.99788 * 60.00095 * 22 20 19 41 41 H 1.08002 * 120.00498 * 0.02562 * 24 23 20 42 42 H 1.08002 * 119.99997 * 180.27329 * 25 24 23 43 43 H 1.08007 * 119.99687 * 179.83113 * 26 25 24 44 44 H 1.08005 * 120.00342 * 179.97438 * 27 26 25 45 45 H 1.07997 * 120.00529 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.0689 -1.4407 5 7 4.5831 -0.0676 -1.4408 6 6 5.3145 1.2002 -1.5023 7 6 5.5654 1.5661 -2.9425 8 1 5.2154 0.9187 -3.7330 9 6 6.2418 2.7272 -3.2511 10 7 6.6676 3.5158 -2.2886 11 14 6.5522 3.1810 -5.0364 12 1 5.4210 3.9991 -5.5430 13 1 7.8116 3.9614 -5.1370 14 1 6.6705 1.9433 -5.8484 15 6 5.2579 -1.2329 -1.3843 16 8 6.4707 -1.2320 -1.3839 17 6 4.5055 -2.5372 -1.3215 18 16 5.6854 -3.9133 -1.2538 19 6 4.6084 -5.3712 -1.1830 20 6 5.4663 -6.6365 -1.1214 21 1 6.1581 -6.6478 -1.9637 22 8 6.2048 -6.6524 0.1019 23 6 4.5759 -7.8507 -1.1864 24 6 3.9199 -8.2883 -0.0511 25 6 3.0998 -9.3995 -0.1118 26 6 2.9430 -10.0784 -1.3057 27 6 3.6031 -9.6439 -2.4397 28 6 4.4198 -8.5302 -2.3801 29 1 2.9717 -0.8633 0.5563 30 1 2.9710 0.9145 0.4702 31 1 2.7544 0.7951 -1.9971 32 1 2.7552 -0.9829 -1.9110 33 1 4.7248 1.9833 -1.0259 34 1 6.2670 1.0957 -0.9828 35 1 7.1437 4.3325 -2.5057 36 1 3.8792 -2.6384 -2.2078 37 1 3.8786 -2.5524 -0.4299 38 1 3.9795 -5.4020 -2.0728 39 1 3.9789 -5.3150 -0.2949 40 1 5.6519 -6.6436 0.8952 41 1 4.0451 -7.7598 0.8824 42 1 2.5837 -9.7388 0.7742 43 1 2.3043 -10.9481 -1.3524 44 1 3.4809 -10.1746 -3.3725 45 1 4.9353 -8.1904 -3.2662 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058264263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:51 Heat of formation + Delta-G solvation = -53.034823 kcal Electronic energy + Delta-G solvation = -26589.124783 eV Core-core repulsion = 22697.179355 eV Total energy + Delta-G solvation = -3891.945428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.72434 -40.53237 -38.01589 -37.89705 -36.71169 -34.89651 -33.06545 -32.22867 -31.75296 -31.41018 -30.24264 -28.63143 -25.33884 -25.13707 -24.50102 -23.47249 -21.98634 -20.16745 -18.88324 -18.71128 -18.34545 -17.99363 -17.58087 -16.94924 -16.89111 -16.47869 -16.36507 -16.12975 -15.94525 -15.65319 -15.22096 -15.00385 -14.90247 -14.54757 -14.32464 -14.24066 -14.07835 -13.74222 -13.64204 -13.55744 -13.36498 -13.21451 -13.06747 -12.88973 -12.74079 -12.71145 -12.50384 -12.23480 -12.17628 -11.88710 -11.88102 -11.68009 -11.13341 -10.75474 -10.68139 -10.58127 -9.82490 -9.69459 -9.52512 -8.57786 -8.18167 -6.30129 0.28855 0.49742 0.60167 1.39394 1.42436 1.51471 1.64165 1.67618 1.83459 1.83767 2.28398 2.44870 2.83341 3.08232 3.14530 3.49660 3.61322 3.69932 3.87263 3.98073 4.01454 4.05593 4.12778 4.15370 4.17694 4.30397 4.32155 4.51681 4.56349 4.61728 4.66128 4.82658 4.87282 5.04214 5.04969 5.09377 5.15606 5.33568 5.55428 5.59187 5.62781 5.63526 5.85733 6.09254 6.12174 6.59408 6.67108 6.76775 6.79969 7.31624 7.46251 8.88569 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.011476 B = 0.002301 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.297716 B =12166.442258 C =13495.092977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.038 4.038 4 C 0.112 3.888 5 N -0.593 5.593 6 C 0.261 3.739 7 C -0.539 4.539 8 H 0.053 0.947 9 C 0.011 3.989 10 N -0.925 5.925 11 Si 0.957 3.043 12 H -0.266 1.266 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.516 3.484 16 O -0.572 6.572 17 C -0.113 4.113 18 S -0.231 6.231 19 C -0.118 4.118 20 C 0.173 3.827 21 H 0.101 0.899 22 O -0.560 6.560 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.128 4.128 28 C -0.122 4.122 29 H 0.137 0.863 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.038 0.962 34 H 0.004 0.996 35 H 0.265 0.735 36 H 0.130 0.870 37 H 0.144 0.856 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.387 0.613 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.516 -25.347 4.815 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.080 4.080 4 C -0.013 4.013 5 N -0.324 5.324 6 C 0.139 3.861 7 C -0.578 4.578 8 H 0.071 0.929 9 C -0.189 4.189 10 N -0.565 5.565 11 Si 0.783 3.217 12 H -0.191 1.191 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.304 3.696 16 O -0.451 6.451 17 C -0.264 4.264 18 S -0.004 6.004 19 C -0.266 4.266 20 C 0.112 3.888 21 H 0.118 0.882 22 O -0.368 6.368 23 C -0.123 4.123 24 C -0.135 4.135 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.146 4.146 28 C -0.141 4.141 29 H 0.155 0.845 30 H 0.139 0.861 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.056 0.944 34 H 0.022 0.978 35 H 0.074 0.926 36 H 0.148 0.852 37 H 0.162 0.838 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.237 0.763 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.156 0.844 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.881 -25.087 4.445 27.704 hybrid contribution -0.804 0.834 -0.647 1.327 sum -11.685 -24.253 3.798 27.188 Atomic orbital electron populations 1.81265 1.14382 1.11002 1.09976 1.29116 0.94888 0.91359 0.91763 1.19833 0.80128 1.08171 0.99819 1.21571 0.78764 1.05602 0.95351 1.47997 1.06861 1.06275 1.71230 1.18835 0.91554 0.80057 0.95611 1.21734 1.36488 1.06136 0.93467 0.92855 1.25723 0.95242 0.96435 1.01470 1.70018 1.39138 1.13702 1.33629 0.85566 0.77872 0.78115 0.80174 1.19121 1.21078 1.19952 1.20282 0.87471 0.85495 0.76397 1.90726 1.16218 1.87254 1.50910 1.23590 1.00938 0.92567 1.09283 1.88236 1.14689 0.99623 1.97888 1.24295 1.00812 0.94300 1.07215 1.20324 0.91413 0.88430 0.88591 0.88163 1.86690 1.37690 1.96688 1.15724 1.20424 0.99309 0.97521 0.95054 1.21160 0.96607 0.97537 0.98224 1.21448 0.98528 0.95474 0.98878 1.21535 0.99558 1.00416 0.92928 1.21435 0.96860 0.96638 0.99621 1.21256 0.99168 0.95996 0.97639 0.84519 0.86117 0.89558 0.87427 0.94377 0.97808 0.92573 0.85223 0.83828 0.88038 0.87634 0.76337 0.84333 0.84005 0.84184 0.84363 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.79 18.54 20.01 0.37 -12.42 16 2 C 0.25 4.93 15.43 89.44 1.38 6.31 16 3 C -0.04 -0.63 6.03 28.79 0.17 -0.46 16 4 C 0.11 2.54 5.17 86.38 0.45 2.98 16 5 N -0.59 -20.69 2.46 -826.16 -2.03 -22.72 16 6 C 0.26 12.44 5.16 85.64 0.44 12.89 16 7 C -0.54 -28.99 9.39 25.60 0.24 -28.75 16 8 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 9 C 0.01 0.58 5.46 84.66 0.46 1.04 16 10 N -0.92 -53.63 13.29 21.45 0.28 -53.35 16 11 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 13 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 15 C 0.52 18.59 7.69 87.66 0.67 19.27 16 16 O -0.57 -27.77 15.44 -3.03 -0.05 -27.82 16 17 C -0.11 -2.59 4.98 71.24 0.35 -2.23 16 18 S -0.23 -6.15 20.66 -56.49 -1.17 -7.32 16 19 C -0.12 -1.85 5.58 71.98 0.40 -1.45 16 20 C 0.17 2.93 3.20 29.85 0.10 3.02 16 21 H 0.10 1.98 8.00 -2.39 -0.02 1.96 16 22 O -0.56 -10.70 12.94 -148.98 -1.93 -12.62 16 23 C -0.12 -1.76 4.97 -19.87 -0.10 -1.86 16 24 C -0.12 -1.40 9.32 22.27 0.21 -1.19 16 25 C -0.13 -1.36 10.05 22.27 0.22 -1.13 16 26 C -0.13 -1.39 10.05 22.27 0.22 -1.16 16 27 C -0.13 -1.56 10.05 22.27 0.22 -1.34 16 28 C -0.12 -1.75 9.67 22.27 0.22 -1.53 16 29 H 0.14 1.49 7.22 -2.39 -0.02 1.47 16 30 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 2.19 8.07 -2.38 -0.02 2.17 16 32 H 0.11 1.75 6.44 -2.39 -0.02 1.74 16 33 H 0.04 1.79 8.07 -2.39 -0.02 1.77 16 34 H 0.00 0.21 7.42 -2.39 -0.02 0.20 16 35 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.13 2.33 7.40 -2.39 -0.02 2.31 16 37 H 0.14 2.07 7.19 -2.39 -0.02 2.05 16 38 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.39 4.38 7.50 -74.05 -0.56 3.83 16 41 H 0.14 1.04 6.78 -2.91 -0.02 1.02 16 42 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 44 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.13 1.62 8.04 -2.91 -0.02 1.60 16 Total: -1.00 -80.16 403.22 3.64 -76.52 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.46 Total: 9.55 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 5.67 Total: 4.40 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -1.37 Total: -88.48 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -1.97 Total: -40.44 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -1.17 Total: -7.32 kcal Total: -80.16 3.64 -76.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058264263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.490 kcal (2) G-P(sol) polarization free energy of solvation -80.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds