Wall clock time and date at job start Tue Mar 31 2020 05:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46961 * 182.20641 * 3 2 1 5 5 N 1.46499 * 109.47055 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00123 * 270.00331 * 5 4 3 7 7 C 1.50702 * 109.46904 * 269.99929 * 6 5 4 8 8 H 1.07993 * 120.00490 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99735 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00050 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99825 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47614 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47277 * 119.99668 * 11 9 7 14 14 H 1.48506 * 109.47103 * 239.99349 * 11 9 7 15 15 C 1.34779 * 119.99707 * 90.00663 * 5 4 3 16 16 O 1.21282 * 119.99922 * 180.02562 * 15 5 4 17 17 C 1.50699 * 120.00037 * 359.97438 * 15 5 4 18 18 S 1.81399 * 109.47054 * 180.02562 * 17 15 5 19 19 C 1.81398 * 103.00088 * 179.97438 * 18 17 15 20 20 C 1.53006 * 109.47199 * 179.97438 * 19 18 17 21 21 H 1.09000 * 109.46988 * 60.00250 * 20 19 18 22 22 O 1.42896 * 109.47067 * 300.00277 * 20 19 18 23 23 C 1.50701 * 109.46891 * 179.97438 * 20 19 18 24 24 C 1.38240 * 119.99862 * 84.73080 * 23 20 19 25 25 C 1.38228 * 119.99917 * 179.78694 * 24 23 20 26 26 C 1.38236 * 120.00113 * 0.43656 * 25 24 23 27 27 C 1.38234 * 119.99953 * 359.81604 * 26 25 24 28 28 C 1.38234 * 120.00123 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.47093 * 62.21584 * 3 2 1 30 30 H 1.09001 * 109.47290 * 302.21103 * 3 2 1 31 31 H 1.09002 * 109.47160 * 60.00457 * 4 3 2 32 32 H 1.09001 * 109.47495 * 300.00336 * 4 3 2 33 33 H 1.08991 * 109.47410 * 30.00046 * 6 5 4 34 34 H 1.09007 * 109.47039 * 150.00320 * 6 5 4 35 35 H 0.97004 * 119.99848 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.47247 * 60.00371 * 17 15 5 37 37 H 1.09001 * 109.47358 * 299.99798 * 17 15 5 38 38 H 1.09002 * 109.46881 * 299.99990 * 19 18 17 39 39 H 1.09000 * 109.46946 * 60.00038 * 19 18 17 40 40 H 0.96709 * 113.99910 * 299.99763 * 22 20 19 41 41 H 1.08002 * 119.99674 * 359.97438 * 24 23 20 42 42 H 1.08001 * 120.00286 * 180.27408 * 25 24 23 43 43 H 1.08001 * 120.00093 * 179.83729 * 26 25 24 44 44 H 1.07995 * 120.00217 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.00806 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.4423 0.0555 5 7 4.5822 1.4430 0.0562 6 6 5.3143 1.3946 1.3242 7 6 5.5646 2.7978 1.8136 8 1 5.2132 3.6412 1.2379 9 6 6.2423 3.0047 2.9964 10 7 6.6698 1.9777 3.6977 11 14 6.5520 4.7440 3.6033 12 1 5.9740 5.7149 2.6397 13 1 5.9143 4.9255 4.9320 14 1 8.0144 4.9744 3.7205 15 6 5.2566 1.4882 -1.1099 16 8 6.4694 1.4882 -1.1095 17 6 4.5035 1.5374 -2.4144 18 16 5.6828 1.5904 -3.7917 19 6 4.6051 1.6446 -5.2498 20 6 5.4625 1.6937 -6.5162 21 1 6.0927 0.8056 -6.5630 22 8 6.2860 2.8612 -6.4888 23 6 4.5671 1.7381 -7.7275 24 6 4.0662 2.9472 -8.1728 25 6 3.2485 2.9884 -9.2866 26 6 2.9243 1.8196 -9.9497 27 6 3.4209 0.6100 -9.5013 28 6 4.2422 0.5692 -8.3901 29 1 2.9715 -0.4782 -0.9092 30 1 2.9716 -0.5470 0.8695 31 1 2.7538 1.9213 0.9647 32 1 2.7536 1.9899 -0.8140 33 1 4.7252 0.8517 2.0633 34 1 6.2670 0.8866 1.1746 35 1 7.1462 2.1233 4.5300 36 1 3.8762 2.4285 -2.4383 37 1 3.8777 0.6498 -2.5064 38 1 3.9767 0.7542 -5.2704 39 1 3.9753 2.5329 -5.2032 40 1 5.7909 3.6909 -6.4471 41 1 4.3162 3.8598 -7.6523 42 1 2.8607 3.9335 -9.6371 43 1 2.2832 1.8515 -10.8183 44 1 3.1674 -0.3032 -10.0191 45 1 4.6299 -0.3758 -8.0395 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058264264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:55 Heat of formation + Delta-G solvation = -30.605881 kcal Electronic energy + Delta-G solvation = -26597.001816 eV Core-core repulsion = 22706.028980 eV Total energy + Delta-G solvation = -3890.972836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.00011 -39.27674 -37.25711 -36.92375 -35.31841 -32.97313 -32.44055 -31.25401 -30.92350 -30.21398 -29.56190 -26.89982 -24.42189 -24.09365 -22.97840 -22.82267 -21.38874 -18.79412 -18.12859 -17.70227 -16.71899 -16.68231 -16.45921 -16.26411 -15.92329 -15.50553 -15.23756 -15.06844 -14.77304 -14.57474 -14.46950 -14.10564 -13.87104 -13.75855 -13.41780 -13.22511 -12.87887 -12.62196 -12.51500 -12.49497 -12.34456 -12.13216 -11.98386 -11.76297 -11.61491 -11.38342 -11.30124 -11.03470 -10.90105 -10.67180 -10.46422 -10.21640 -9.80808 -9.72721 -9.32919 -9.20347 -9.14646 -8.49784 -7.94316 -7.52707 -6.11330 -4.16001 0.86728 0.99393 1.49861 2.55973 2.66168 2.74435 3.16206 3.27341 3.34804 3.35930 3.39018 3.58585 4.10212 4.12422 4.24346 4.39998 4.43548 4.54655 4.65323 4.71513 4.72920 4.84835 4.95216 4.96882 5.06261 5.11321 5.12137 5.24130 5.27073 5.28862 5.40656 5.43784 5.54162 5.64165 5.75038 5.99229 6.03984 6.11043 6.16321 6.56978 6.84194 7.29498 7.31966 7.36364 7.50526 7.84431 8.12181 8.14810 8.75015 8.91235 9.49714 10.96882 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.011551 B = 0.002323 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.444117 B =12049.141320 C =13569.363043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.117 3.883 5 N -0.593 5.593 6 C 0.245 3.755 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.282 1.282 15 C 0.524 3.476 16 O -0.509 6.509 17 C -0.136 4.136 18 S -0.148 6.148 19 C -0.147 4.147 20 C 0.169 3.831 21 H 0.116 0.884 22 O -0.540 6.540 23 C -0.111 4.111 24 C -0.110 4.110 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.118 4.118 28 C -0.108 4.108 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.048 0.952 35 H 0.264 0.736 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.374 0.626 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 -2.619 -23.812 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.102 4.102 3 C -0.093 4.093 4 C -0.010 4.010 5 N -0.325 5.325 6 C 0.127 3.873 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.208 1.208 15 C 0.308 3.692 16 O -0.384 6.384 17 C -0.288 4.288 18 S 0.078 5.922 19 C -0.296 4.296 20 C 0.108 3.892 21 H 0.134 0.866 22 O -0.345 6.345 23 C -0.113 4.113 24 C -0.129 4.129 25 C -0.135 4.135 26 C -0.139 4.139 27 C -0.136 4.136 28 C -0.127 4.127 29 H 0.123 0.877 30 H 0.137 0.863 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.222 0.778 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.438 -3.109 -23.566 25.223 hybrid contribution -1.524 1.295 0.447 2.049 sum -9.962 -1.814 -23.119 25.239 Atomic orbital electron populations 1.81211 1.13031 1.08601 1.09311 1.29094 0.95090 0.93140 0.92846 1.19908 0.81365 1.01612 1.06367 1.21325 0.82193 0.93035 1.04423 1.48152 1.04828 1.71718 1.07832 1.19402 0.92666 0.97833 0.77412 1.21432 1.36801 0.92331 1.06221 0.92294 1.24919 0.95240 0.97295 0.96540 1.69925 1.38211 1.29815 1.15197 0.86451 0.78178 0.84403 0.78454 1.19776 1.20997 1.20817 1.19385 0.87850 0.78076 0.83863 1.90751 1.13191 1.48208 1.86263 1.23743 1.02019 1.06170 0.96842 1.87888 1.10696 1.97730 0.95846 1.24355 1.02008 1.05632 0.97571 1.20426 0.90166 0.90708 0.87870 0.86587 1.86717 1.35850 1.15521 1.96436 1.20525 0.99018 0.94084 0.97716 1.20913 0.97474 0.97334 0.97139 1.21141 0.98187 0.98480 0.95705 1.21209 0.99953 0.92739 0.99974 1.21173 0.97641 0.98093 0.96707 1.21035 0.98201 0.97783 0.95632 0.87667 0.86291 0.88509 0.90808 0.94525 0.93388 0.92676 0.87777 0.88031 0.89238 0.89950 0.77810 0.86011 0.85879 0.86028 0.85851 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.31 18.54 42.15 0.78 -5.53 16 2 C 0.22 2.49 15.43 -20.76 -0.32 2.17 16 3 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 4 C 0.12 1.48 5.17 -4.04 -0.02 1.46 16 5 N -0.59 -10.58 2.46 -175.06 -0.43 -11.01 16 6 C 0.25 5.72 5.16 -5.19 -0.03 5.70 16 7 C -0.53 -14.00 9.39 -34.44 -0.32 -14.32 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.34 13.29 55.43 0.74 -24.61 16 11 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 C 0.52 9.58 7.69 -10.99 -0.08 9.50 16 16 O -0.51 -11.95 15.44 5.56 0.09 -11.86 16 17 C -0.14 -1.75 4.98 36.01 0.18 -1.57 16 18 S -0.15 -2.04 20.52 -107.50 -2.21 -4.24 16 19 C -0.15 -1.33 5.62 37.16 0.21 -1.12 16 20 C 0.17 1.52 3.26 -27.88 -0.09 1.43 16 21 H 0.12 1.09 8.05 -51.93 -0.42 0.67 16 22 O -0.54 -5.60 12.73 -35.23 -0.45 -6.05 16 23 C -0.11 -0.90 5.00 -104.62 -0.52 -1.42 16 24 C -0.11 -0.82 9.33 -39.58 -0.37 -1.19 16 25 C -0.12 -0.80 10.05 -39.59 -0.40 -1.20 16 26 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 27 C -0.12 -0.81 10.05 -39.58 -0.40 -1.20 16 28 C -0.11 -0.81 9.68 -39.58 -0.38 -1.19 16 29 H 0.11 0.83 7.22 -51.93 -0.37 0.45 16 30 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 32 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 33 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.10 1.15 7.40 -51.92 -0.38 0.76 16 37 H 0.10 0.98 7.18 -51.92 -0.37 0.61 16 38 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.37 2.68 7.40 45.56 0.34 3.02 16 41 H 0.12 0.69 6.62 -52.49 -0.35 0.34 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 402.83 15.07 6.07 6.07 Total: -1.00 -34.93 402.83 -9.28 -44.21 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.62 Total: 0.08 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.22 Total: -3.23 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 1.09 Total: -41.14 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.36 Total: -17.91 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -2.04 SS G_CDS: -2.21 Total: -4.24 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.93 -9.28 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058264264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.601 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds