Wall clock time and date at job start Tue Mar 31 2020 05:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46742 * 261.41248 * 3 2 1 5 5 S 1.65610 * 119.99666 * 165.00249 * 4 3 2 6 6 O 1.42093 * 106.40098 * 311.46105 * 5 4 3 7 7 O 1.42101 * 106.39828 * 178.53951 * 5 4 3 8 8 C 1.76200 * 107.21704 * 65.00374 * 5 4 3 9 9 C 1.38373 * 119.84984 * 89.99742 * 8 5 4 10 10 C 1.37930 * 120.15538 * 179.97438 * 9 8 5 11 11 C 1.39652 * 119.84289 * 359.97438 * 10 9 8 12 12 C 1.47724 * 120.14952 * 180.02562 * 11 10 9 13 13 O 1.21598 * 120.00285 * 330.47385 * 12 11 10 14 14 N 1.34779 * 120.00046 * 150.47604 * 12 11 10 15 15 C 1.36875 * 119.99840 * 4.81574 * 14 12 11 16 16 H 1.07994 * 120.00260 * 311.09436 * 15 14 12 17 17 C 1.39050 * 119.99485 * 131.09120 * 15 14 12 18 18 N 1.31364 * 120.00460 * 343.10557 * 17 15 14 19 19 Si 1.86800 * 119.99519 * 163.10036 * 17 15 14 20 20 H 1.48501 * 109.46919 * 60.00467 * 19 17 15 21 21 H 1.48504 * 109.47159 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47410 * 300.00038 * 19 17 15 23 23 C 1.46499 * 120.00117 * 184.82526 * 14 12 11 24 24 C 1.53002 * 117.49760 * 181.72685 * 23 14 12 25 25 C 1.52993 * 117.50252 * 113.06683 * 23 14 12 26 26 C 1.39641 * 119.70294 * 0.28051 * 11 10 9 27 27 C 1.37946 * 119.83948 * 359.46699 * 26 11 10 28 28 H 4.40636 * 5.51371 * 179.97438 * 4 1 2 29 29 H 1.09005 * 109.47006 * 141.41828 * 3 2 1 30 30 H 1.08998 * 109.47296 * 21.41545 * 3 2 1 31 31 H 0.96998 * 120.00190 * 345.00242 * 4 3 2 32 32 H 1.08007 * 119.92473 * 359.97438 * 9 8 5 33 33 H 1.07999 * 120.08143 * 179.97438 * 10 9 8 34 34 H 0.96997 * 120.00094 * 185.04969 * 18 17 15 35 35 H 1.09002 * 115.54737 * 327.38927 * 23 14 12 36 36 H 1.08998 * 117.49715 * 359.97438 * 24 23 14 37 37 H 1.09005 * 117.49655 * 145.02063 * 24 23 14 38 38 H 1.09005 * 117.49607 * 214.98105 * 25 23 14 39 39 H 1.08996 * 117.49951 * 359.97241 * 25 23 14 40 40 H 1.07991 * 120.08159 * 179.72412 * 26 11 10 41 41 H 1.08008 * 119.91931 * 180.25825 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2071 1.3658 5 16 4.7164 -0.1115 1.7365 6 8 5.0015 -1.3985 1.2059 7 8 4.8809 0.2171 3.1092 8 6 5.7049 1.0308 0.8295 9 6 6.0333 2.2531 1.3889 10 6 6.8071 3.1519 0.6848 11 6 7.2598 2.8256 -0.5954 12 6 8.0895 3.7829 -1.3554 13 8 7.9578 4.9782 -1.1754 14 7 8.9925 3.3313 -2.2483 15 6 9.0727 1.9929 -2.5233 16 1 9.1220 1.2777 -1.7157 17 6 9.0906 1.5542 -3.8427 18 7 8.7035 2.3574 -4.8074 19 14 9.6653 -0.1775 -4.2433 20 1 8.7947 -1.1607 -3.5500 21 1 9.5903 -0.3970 -5.7101 22 1 11.0681 -0.3512 -3.7884 23 6 9.8882 4.2730 -2.9243 24 6 10.8633 3.7034 -3.9567 25 6 11.3807 4.1859 -2.5993 26 6 6.9202 1.5926 -1.1561 27 6 6.1500 0.7011 -0.4385 28 1 -1.0500 0.0002 -0.0001 29 1 3.0090 0.8042 -0.6409 30 1 3.0098 -0.9559 -0.3752 31 1 2.5306 0.5305 2.0528 32 1 5.6829 2.5040 2.3793 33 1 7.0624 4.1057 1.1223 34 1 8.6461 2.0290 -5.7182 35 1 9.4720 5.2618 -3.1172 36 1 10.8386 2.6280 -4.1325 37 1 11.0889 4.3177 -4.8284 38 1 11.9464 5.1174 -2.5785 39 1 11.6961 3.4282 -1.8820 40 1 7.2633 1.3358 -2.1473 41 1 5.8901 -0.2547 -0.8692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058281420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:24 Heat of formation + Delta-G solvation = 27.464742 kcal Electronic energy + Delta-G solvation = -28050.026526 eV Core-core repulsion = 24025.738727 eV Total energy + Delta-G solvation = -4024.287800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -39.63215 -37.95323 -37.28294 -36.24772 -36.17114 -35.85662 -33.48628 -32.49816 -31.84710 -30.77304 -30.44370 -26.71655 -25.48355 -24.12646 -22.38680 -21.43276 -21.00104 -19.78261 -19.50339 -18.94712 -18.05285 -17.51375 -16.99772 -16.56994 -16.24862 -15.43676 -15.12720 -14.86527 -14.77522 -14.26472 -14.10531 -14.04951 -13.83787 -13.71044 -13.29223 -12.94202 -12.56144 -12.46037 -12.24423 -12.17039 -12.10297 -12.02139 -11.68266 -11.39828 -11.07435 -10.99771 -10.85308 -10.79289 -10.67917 -10.51592 -10.48949 -9.87757 -9.69356 -9.46971 -9.04154 -8.88463 -8.66848 -8.57005 -7.48700 -6.61461 -4.39445 0.32792 0.92440 1.73645 2.31627 2.53075 2.97320 3.06687 3.08609 3.13114 3.44199 3.73014 3.85104 3.96689 4.20462 4.40029 4.41353 4.62394 4.92642 5.04814 5.16687 5.17488 5.23442 5.48444 5.60893 5.64117 5.74379 5.83921 5.88812 6.02508 6.05787 6.07857 6.26528 6.39539 6.48977 6.59881 6.69585 6.74193 6.91532 6.97720 7.13776 7.20004 7.26479 7.31266 7.78742 8.09245 8.75477 9.18163 9.64386 10.38538 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.003366 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.315005 B = 8316.928896 C = 8979.717307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.196 4.196 3 C 0.226 3.774 4 N -1.118 6.118 5 S 2.699 3.301 6 O -0.957 6.957 7 O -0.960 6.960 8 C -0.677 4.677 9 C -0.039 4.039 10 C -0.104 4.104 11 C -0.033 4.033 12 C 0.511 3.489 13 O -0.593 6.593 14 N -0.398 5.398 15 C -0.365 4.365 16 H 0.094 0.906 17 C 0.058 3.942 18 N -0.834 5.834 19 Si 0.902 3.098 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.267 1.267 23 C 0.105 3.895 24 C -0.143 4.143 25 C -0.216 4.216 26 C -0.095 4.095 27 C -0.047 4.047 28 H 0.221 0.779 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.420 0.580 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.276 0.724 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.183 0.817 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 -4.619 5.484 11.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.197 4.197 3 C 0.101 3.899 4 N -0.877 5.877 5 S 2.791 3.209 6 O -0.947 6.947 7 O -0.950 6.950 8 C -0.766 4.766 9 C -0.058 4.058 10 C -0.124 4.124 11 C -0.036 4.036 12 C 0.300 3.700 13 O -0.478 6.478 14 N -0.114 5.114 15 C -0.492 4.492 16 H 0.111 0.889 17 C -0.152 4.152 18 N -0.466 5.466 19 Si 0.726 3.274 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.192 1.192 23 C 0.000 4.000 24 C -0.181 4.181 25 C -0.255 4.255 26 C -0.114 4.114 27 C -0.067 4.067 28 H 0.238 0.762 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.254 0.746 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.200 0.800 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.052 -4.720 5.705 11.695 hybrid contribution 0.024 -0.082 -0.580 0.586 sum -9.028 -4.803 5.125 11.439 Atomic orbital electron populations 1.24982 0.95915 1.00934 0.97814 1.22791 0.94083 1.00663 1.02185 1.18180 0.84982 1.03557 0.83173 1.55626 1.29164 1.85169 1.17737 1.01631 0.71987 0.73999 0.73285 1.93581 1.83511 1.37012 1.80597 1.93582 1.84971 1.85119 1.31358 1.30608 1.21281 1.14202 1.10521 1.20641 0.95280 0.91211 0.98683 1.21325 0.97529 0.99677 0.93895 1.20443 0.94924 0.94484 0.93754 1.18297 0.80937 0.87196 0.83524 1.90646 1.70302 1.16205 1.70688 1.42662 1.27522 1.06416 1.34799 1.19353 1.55488 0.81800 0.92581 0.88905 1.25472 0.94936 0.98993 0.95797 1.69984 1.38946 1.36083 1.01623 0.86393 0.80466 0.82397 0.78120 1.18868 1.20383 1.19184 1.21191 0.85089 0.93959 0.99735 1.23134 1.01490 1.02704 0.90744 1.23385 0.98661 1.02231 1.01242 1.22880 0.93655 0.91646 1.03175 1.20990 0.94543 0.99383 0.91764 0.76229 0.88731 0.87672 0.74584 0.84683 0.84841 0.91378 0.87582 0.87052 0.90469 0.90159 0.89441 0.80040 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 19.25 29.55 0.57 -0.87 16 2 C -0.20 -1.88 13.49 -37.12 -0.50 -2.38 16 3 C 0.23 2.15 6.70 -6.83 -0.05 2.10 16 4 N -1.12 -11.07 5.98 -13.15 -0.08 -11.15 16 5 S 2.70 35.04 5.73 -107.50 -0.62 34.43 16 6 O -0.96 -14.64 16.74 -57.17 -0.96 -15.60 16 7 O -0.96 -14.47 17.27 -57.17 -0.99 -15.46 16 8 C -0.68 -10.01 5.95 -39.48 -0.24 -10.25 16 9 C -0.04 -0.59 9.50 -39.64 -0.38 -0.97 16 10 C -0.10 -1.86 9.60 -39.17 -0.38 -2.23 16 11 C -0.03 -0.67 5.61 -104.97 -0.59 -1.26 16 12 C 0.51 12.20 7.43 -12.38 -0.09 12.11 16 13 O -0.59 -15.39 16.49 5.28 0.09 -15.30 16 14 N -0.40 -9.46 2.75 -108.84 -0.30 -9.75 16 15 C -0.36 -8.32 5.37 -15.00 -0.08 -8.40 16 16 H 0.09 2.08 6.60 -52.49 -0.35 1.73 16 17 C 0.06 1.30 2.79 -17.45 -0.05 1.25 16 18 N -0.83 -19.66 11.39 55.50 0.63 -19.03 16 19 Si 0.90 17.40 29.33 -169.99 -4.99 12.41 16 20 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 23 C 0.11 2.38 5.62 -67.93 -0.38 2.00 16 24 C -0.14 -2.96 8.24 -26.69 -0.22 -3.18 16 25 C -0.22 -4.24 10.38 -26.70 -0.28 -4.52 16 26 C -0.09 -1.79 7.90 -39.16 -0.31 -2.10 16 27 C -0.05 -0.75 9.50 -39.64 -0.38 -1.13 16 28 H 0.22 0.98 7.80 -54.09 -0.42 0.56 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.11 0.93 7.75 -51.93 -0.40 0.53 16 31 H 0.42 3.41 8.63 -34.48 -0.30 3.11 16 32 H 0.14 1.72 7.60 -52.48 -0.40 1.32 16 33 H 0.13 2.29 7.92 -52.49 -0.42 1.87 16 34 H 0.28 6.17 8.31 -40.82 -0.34 5.84 16 35 H 0.11 2.49 7.78 -51.93 -0.40 2.09 16 36 H 0.11 2.46 4.80 -51.93 -0.25 2.21 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.18 3.69 4.93 -52.49 -0.26 3.43 16 41 H 0.14 1.86 7.60 -52.48 -0.40 1.46 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -30.84 366.62 -9.44 -40.28 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -4.42 Total: 13.48 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -3.34 Total: -19.83 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.25 Total: -39.93 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -1.86 Total: -46.36 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -4.99 Total: 12.41 kcal Atomic # 16 Polarization: 35.04 SS G_CDS: -0.62 Total: 34.43 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.84 -9.44 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058281420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.743 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds